© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1133.t1 |
| Gene name | |
| Location | scaffold_01:2994060..2997000 |
| Strand | - |
| Gene length (bp) | 2940 |
| Transcript length (bp) | 1473 |
| Coding sequence length (bp) | 1473 |
| Protein length (aa) | 491 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08883 | DOPA_dioxygen | Dopa 4,5-dioxygenase family | 8.2E-24 | 60 | 128 |
| PF06101 | Vps62 | Vacuolar protein sorting-associated protein 62 | 5.1E-10 | 313 | 438 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.01 | 7.72 | 24.31 |
| 5d_25C | Five days - 25 degrees Celsius | 26.22 | 14.16 | 38.28 |
| 7d_25C | Seven days - 25 degrees Celsius | 25.78 | 13.60 | 37.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 24.26 | 12.74 | 35.78 |
| 7d_15C | Seven days - 15 degrees Celsius | 34.89 | 18.16 | 51.61 |
| 7d_30C | Seven days - 30 degrees Celsius | 55.93 | 32.34 | 79.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.064657 | no |
| 3d_25C | 7d_25C | 0.081084 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.141563 | no |
| 5d_25C | 7d_25C | 0.969454 | no |
| 5d_25C | 7d_15C | 0.321295 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.839575 | no |
| 7d_25C | 7d_15C | 0.302947 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.880779 | no |
| 7d_15C | 7d_30C | 0.058289 | no |
| 7d_15C | 10d_25C | 0.191260 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1133.t1 MTDAFAFSYPSPLAGYENLEPLSDERAEDGKSMKNPQHGILSKAYSEFPDPLSKGREGGFDVHIYHFQNSPDQAA FAKALWERIRREFPELRIYRFFDRPIGPHPVAMFEVNLFTPAQFGAFVPWLYILESHAHDEVMPINIWVKHRLLE DKPHKMRLFISLAVVGLSSTKPAWASLGDRATDVPPYVLEYAPLIWLHSQETYMPSDIQQQLDHTRPNVNWRAIE GVESPLTLNNLDTLNSMGNTSVYLTSLEGIEANPEPAWFRGIRPDAQGRTVDGTSSVLIIADRGNGTVDAFYFYF YAFNKGGKVLGLEFGDHIGDWEHNMIRFVNGTPDAIWYSQHASGQAFSYAAVEKKDKRPYVYSAVGTHANYAIPG KHDHTFPGFNLPAGFLLDYTDRGVLWDPMLNVYTYTYDGTTAAFQAVDSKDPVAWLEFNGRWGDDQPPNEPTLFG EAKNVAGPNGPRFKSLDRQLVCPSKPCFVLPFRTFSVDAA* |
| Coding | >Pro_DTO377G3_2|g1133.t1 ATGACAGACGCATTCGCTTTCTCATACCCATCTCCATTGGCGGGGTACGAAAACCTCGAGCCGCTATCCGACGAG CGCGCCGAAGACGGCAAGTCAATGAAAAATCCCCAACATGGCATATTAAGCAAAGCCTACTCGGAATTCCCCGAC CCTCTCTCCAAAGGCCGGGAAGGTGGCTTCGACGTCCACATCTATCATTTCCAAAACAGCCCCGACCAAGCCGCA TTCGCCAAAGCGCTCTGGGAACGAATTAGACGAGAATTCCCCGAACTTCGCATTTATAGATTCTTCGACCGGCCG ATTGGCCCGCATCCGGTGGCAATGTTCGAAGTGAATCTGTTCACACCTGCGCAGTTTGGAGCCTTCGTTCCTTGG CTGTATATCCTCGAATCCCATGCCCATGACGAGGTCATGCCGATAAACATTTGGGTTAAACATCGCTTACTCGAG GACAAGCCACACAAGATGCGTCTTTTCATATCGTTGGCGGTAGTCGGTCTATCTTCAACCAAACCGGCCTGGGCA TCCCTCGGCGACAGGGCTACTGATGTCCCGCCATATGTCTTAGAATATGCACCCTTGATCTGGCTCCATAGCCAG GAAACATACATGCCGAGCGATATCCAACAGCAGCTCGATCACACCAGACCCAATGTCAACTGGAGGGCCATCGAG GGAGTGGAATCACCCTTGACCCTTAACAACCTCGACACGCTCAATTCGATGGGTAATACGAGCGTCTACCTAACA TCTCTAGAGGGCATCGAAGCCAACCCAGAGCCAGCCTGGTTCCGAGGGATCAGACCGGACGCCCAGGGACGAACA GTTGATGGTACATCGAGTGTCCTTATCATCGCAGACCGTGGCAACGGAACCGTTGATGCGTTCTACTTCTACTTC TATGCATTCAACAAAGGCGGCAAAGTCCTAGGCCTGGAATTTGGCGACCACATCGGAGACTGGGAACATAACATG ATCCGCTTCGTCAACGGCACACCCGACGCAATATGGTACAGTCAGCATGCTAGCGGCCAGGCGTTCAGCTACGCC GCCGTTGAAAAGAAGGACAAGCGGCCGTATGTGTACTCTGCAGTCGGTACGCATGCAAACTATGCAATTCCAGGA AAACACGACCACACCTTCCCGGGCTTCAACCTGCCTGCAGGGTTTCTGTTGGACTATACGGACCGCGGCGTGCTG TGGGATCCCATGCTCAATGTATACACTTATACCTATGATGGAACAACAGCTGCGTTCCAGGCGGTGGACTCTAAA GATCCCGTGGCGTGGTTGGAGTTCAATGGGAGATGGGGTGACGACCAGCCGCCTAATGAGCCTACGCTCTTCGGT GAGGCCAAGAATGTGGCTGGTCCTAATGGTCCTAGGTTCAAGAGCTTGGATAGACAGCTGGTGTGTCCTTCCAAG CCGTGCTTTGTGCTTCCGTTCAGGACTTTCTCCGTGGATGCGGCTTAA |
| Transcript | >Pro_DTO377G3_2|g1133.t1 ATGACAGACGCATTCGCTTTCTCATACCCATCTCCATTGGCGGGGTACGAAAACCTCGAGCCGCTATCCGACGAG CGCGCCGAAGACGGCAAGTCAATGAAAAATCCCCAACATGGCATATTAAGCAAAGCCTACTCGGAATTCCCCGAC CCTCTCTCCAAAGGCCGGGAAGGTGGCTTCGACGTCCACATCTATCATTTCCAAAACAGCCCCGACCAAGCCGCA TTCGCCAAAGCGCTCTGGGAACGAATTAGACGAGAATTCCCCGAACTTCGCATTTATAGATTCTTCGACCGGCCG ATTGGCCCGCATCCGGTGGCAATGTTCGAAGTGAATCTGTTCACACCTGCGCAGTTTGGAGCCTTCGTTCCTTGG CTGTATATCCTCGAATCCCATGCCCATGACGAGGTCATGCCGATAAACATTTGGGTTAAACATCGCTTACTCGAG GACAAGCCACACAAGATGCGTCTTTTCATATCGTTGGCGGTAGTCGGTCTATCTTCAACCAAACCGGCCTGGGCA TCCCTCGGCGACAGGGCTACTGATGTCCCGCCATATGTCTTAGAATATGCACCCTTGATCTGGCTCCATAGCCAG GAAACATACATGCCGAGCGATATCCAACAGCAGCTCGATCACACCAGACCCAATGTCAACTGGAGGGCCATCGAG GGAGTGGAATCACCCTTGACCCTTAACAACCTCGACACGCTCAATTCGATGGGTAATACGAGCGTCTACCTAACA TCTCTAGAGGGCATCGAAGCCAACCCAGAGCCAGCCTGGTTCCGAGGGATCAGACCGGACGCCCAGGGACGAACA GTTGATGGTACATCGAGTGTCCTTATCATCGCAGACCGTGGCAACGGAACCGTTGATGCGTTCTACTTCTACTTC TATGCATTCAACAAAGGCGGCAAAGTCCTAGGCCTGGAATTTGGCGACCACATCGGAGACTGGGAACATAACATG ATCCGCTTCGTCAACGGCACACCCGACGCAATATGGTACAGTCAGCATGCTAGCGGCCAGGCGTTCAGCTACGCC GCCGTTGAAAAGAAGGACAAGCGGCCGTATGTGTACTCTGCAGTCGGTACGCATGCAAACTATGCAATTCCAGGA AAACACGACCACACCTTCCCGGGCTTCAACCTGCCTGCAGGGTTTCTGTTGGACTATACGGACCGCGGCGTGCTG TGGGATCCCATGCTCAATGTATACACTTATACCTATGATGGAACAACAGCTGCGTTCCAGGCGGTGGACTCTAAA GATCCCGTGGCGTGGTTGGAGTTCAATGGGAGATGGGGTGACGACCAGCCGCCTAATGAGCCTACGCTCTTCGGT GAGGCCAAGAATGTGGCTGGTCCTAATGGTCCTAGGTTCAAGAGCTTGGATAGACAGCTGGTGTGTCCTTCCAAG CCGTGCTTTGTGCTTCCGTTCAGGACTTTCTCCGTGGATGCGGCTTAA |
| Gene | >Pro_DTO377G3_2|g1133.t1 ATGACAGACGCATTCGCTTTCTCATACCCATCTCCATTGGCGGGGTACGAAAACCTCGAGCCGCTATCCGAGTAA GTGTCCCGCAACCACATCTAATCCAAGACACTTATCATCTACCGCAGCGAGCGCGCCGAAGACGGCAAGTCAATG AAAAATCCCCAACATGGCATATTAAGCAAAGCCTACTCGGAATTCCCCGACCCTCTCTCCAAAGGCCGGGAAGGT GGCTTCGACGTCCACATCTATCATTTCCAAGTAAGTGCAGGTGCCGCCGCCGGGCCCCAAAGCCAAGCGACAATG AAACTGACGCATCGACCAGAACAGCCCCGACCAAGCCGCATTCGCCAAAGCGCTCTGGGAACGAATTAGACGAGA ATGTAAGCAGCGCACTCTTCCAGCCCAGGAACGGAACTGCAGGTCTGGCCGTCTACCGCGGGGTCGGGGTCGGGT TGCTCATCTCAATTGATCTCTTGCTTATGCTTCGTAAACAGTCCCCGAACTTCGCATTTATAGATTCTTCGACCG GCCGATTGGCCCGCATCCGGTGGCAATGTTCGAAGTGAATCTGTTCACACCTGCGCAGTTTGGAGCCTTCGTTCC TTGGCTGGTTATTAACCGGGGTCCGCTTAGTGCTCTCGTTCACCCTAATACTGTGGCGTCGGAAGATGAGCGAAA TCACACCCAACGTGCCACTTGGCTTGGGGATCGGATTCCGTTGGATTTGAGGGTTTTTAGGCTGAGGAAGGACTA GTTGAAGCAGGAGAGGCTGGATTCATGAATTCGGTTAAGAAAGTACAAATGCACAAATGAAAATTATATATAGAG GAAAGTCCAGCTCAATATATAGTATGTACTATTAATTTTGGTCATGGGATCAACATGTGATAATGAAGAGCGACT AGATCTCATCGTGGCCGACATGTTGGTACTATACATGGTTTCGATGGAGAATGCTGAATACGGTAACTGATATTA TGAAGAGTAAAACAAAAGATAGGTACAACGGCTGGTACAGGTAGGCGATTTTATTGGTGGGACTCACCATTTTAT ACAGATGCATATAATTACAAGTAACTCAACCTGATTCGATACAAGCCCGAACATTCGTCGTGATAGCTTCATGGG CAGGTGACATCATTAATTTAGAGCAATGATATTCAGCCATGGGATCTGATGCAGATCGCACTATTATTATGACCA CCTGGGCACTAAAAGACATATTGTGACTCTTGTACTGCACCCACGAGGCACCTGATATAAGGCTCACATTCCTGA GGGTTGCATATTGCATACTTTATGCCGGAGGATAAAGGAGGTAAACAAAGAACTTTTCAACAATCACACTCTATT GCAGGAGAGATACCACCTGAGTACACCTTGGGATTGTCCACGGCCTCACTTTCTTGTGTCTGAGATTGAAACTCC GATCCGCTGCTCGGAACACTGGCATGATCCCCGTCAAGGAGACGCATACACTTCGAGGAATCAATAGCATCGCTG GAATAGCAGAAGACCTTGTGATTATGAAATTCTATTACTTCGAATTTCGTATCTGCTTCTCGCCCCGTAGTATAT CCTCGAATCCCATGCCCATGACGAGGTCATGCCGATAAACATTTGGGTTAAACATCGCTGTAAGTGCAAGGTATG ATTGTCCTCATAGAGATTAAAAGGGCGCTTGTCGCTCTCCAGTACTCGAGGACAAGCCACACAAGATGCGTCTTT TCATATCGTTGGCGGTAGTCGGTCTATCTTCAACCAAACCGGCCTGGGCATCCCTCGGCGACAGGGCTACTGATG TCCCGCCATATGTCTTAGAATATGGTAAACAAACCATGCGATACATGGTATTGATGATGATCTGAGTTTACTTAT TCTGCCCTACAGCACCCTTGATCTGGCTCCATAGCCAGGAAACATACATGCCGAGCGATATCCAACAGCAGCTCG ATCACACCAGACCCAATGTCAACTGGAGGGCCATCGAGGGAGTGGAATCACCCTTGACCCTTAACAACCTCGACA CGCTCAATTCGATGGGTAATACGAGCGTCTACCTAACATCTCTAGAGGGCATCGAAGCCAACCCAGAGCCAGCCT GGTTCCGAGGGATCAGACCGGACGCCCAGGGACGAACAGTTGATGGTACATCGAGTGTCCTTATCATCGCAGACC GTGGCAACGGAACCGTTGATGCGTTCTACTTCTACTTCTATGCGTAAGCTCGACTGTACCTAAGTTAAGTCTACA TTTATACTGATCGATCCAGATTCAACAAAGGCGGCAAAGTCCTAGGCCTGGAATTTGGCGACCACATCGGAGACT GGTTAGTGTGAAGAATTGCCTGGGTAGAGTCGTTCTAGCTGACAATAAAGGGAACATAACATGATCCGCTTCGTC AACGGCACACCCGACGCAATATGGTACAGTCAGCATGCTAGCGGCCAGGCGTTCAGCTACGCCGCCGTTGAAAAG AAGGACAAGCGGCCGTATGTGTACTCTGCAGTCGGTACGCATGCAAACTATGCAATTCCAGGGTAAGTCTAGATA AGTTTCTGTAGTCTGGCGGATGGCAAGACTGATACACACAGAAAACACGACCACACCTTCCCGGGCTTCAACCTG CCTGCAGGGTTTCTGTTGGACTATACGGACCGCGGCGTGCTGTGGGATCCCATGCTCAATGTATACACTTATACC TATGATGGAACAACAGCTGCGTTCCAGGCGGTGGACTCTAAAGATCCCGTGGCGTGGTTGGAGTTCAATGGGAGA TGGGGTGACGACCAGCCGCCTAATGAGCCTACGCTCTTCGGTGAGGCCAAGAATGTGGCTGGTCCTAATGGTCCT AGGTTCAAGAGCTTGGATAGACAGCTGGTGTGTCCTTCCAAGCCGTGCTTTGTGCTTCCGTTCAGGACTTTCTCC GTGGATGCGGCTTAA |