© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1128.t1 |
| Gene name | |
| Location | scaffold_01:2977805..2978484 |
| Strand | - |
| Gene length (bp) | 679 |
| Transcript length (bp) | 618 |
| Coding sequence length (bp) | 618 |
| Protein length (aa) | 206 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01822 | WSC | WSC domain | 7.2E-15 | 25 | 100 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 50.56 | 24.27 | 76.86 |
| 5d_25C | Five days - 25 degrees Celsius | 24.35 | 9.23 | 39.48 |
| 7d_25C | Seven days - 25 degrees Celsius | 25.74 | 9.39 | 42.08 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.55 | 3.64 | 23.46 |
| 7d_15C | Seven days - 15 degrees Celsius | 24.95 | 8.39 | 41.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.98 | 10.39 | 43.57 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.011993 | yes |
| 3d_25C | 7d_25C | 0.033043 | yes |
| 3d_25C | 7d_15C | 0.034575 | yes |
| 3d_25C | 7d_30C | 0.038966 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.920046 | no |
| 5d_25C | 7d_15C | 0.967504 | no |
| 5d_25C | 7d_30C | 0.830975 | no |
| 5d_25C | 10d_25C | 0.106747 | no |
| 7d_25C | 7d_15C | 0.959418 | no |
| 7d_25C | 7d_30C | 0.929171 | no |
| 7d_25C | 10d_25C | 0.085385 | no |
| 7d_15C | 7d_30C | 0.883840 | no |
| 7d_15C | 10d_25C | 0.118797 | no |
| 7d_30C | 10d_25C | 0.057058 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1128.t1 MHSNYILSALALALPVYSLSSTASMGCYSAIESFKNQGPYTYQSPGHCQAQCAEDNYKVAALSRGNMCYCGNEMP PDSAKIADSKCDVPCAGWPAGSCGGADTFNLIQAAENLQPSASENASTTIAPTAATAAGGIIVAASTANPPTSIV TAVSTANSKSGNVLSKSAVFASATATPTPTNNAAGTVCAGSSLLGAVFVGMGLLL* |
| Coding | >Pro_DTO377G3_2|g1128.t1 ATGCATTCCAACTACATTTTGTCCGCGCTTGCCCTAGCTCTTCCCGTATACTCGCTTAGCTCCACCGCCAGTATG GGCTGCTACTCTGCTATCGAATCATTCAAGAACCAGGGCCCCTACACCTACCAATCACCAGGACATTGCCAGGCC CAATGCGCAGAGGACAATTACAAGGTCGCTGCTCTGAGCCGTGGCAACATGTGCTACTGCGGCAACGAAATGCCC CCAGATTCGGCTAAGATCGCCGACAGTAAATGTGATGTGCCCTGCGCTGGATGGCCTGCAGGAAGCTGTGGCGGC GCGGATACCTTTAATCTCATCCAGGCGGCTGAGAATCTCCAACCGTCTGCATCTGAAAATGCCTCCACTACTATT GCACCCACTGCTGCCACCGCAGCTGGCGGAATCATTGTCGCTGCCTCAACAGCCAACCCACCAACCAGCATCGTG ACCGCGGTATCAACTGCCAACTCTAAGAGTGGCAACGTTTTATCGAAGTCCGCTGTCTTCGCCTCCGCAACTGCC ACGCCCACGCCCACAAACAACGCTGCTGGAACAGTCTGCGCGGGATCCTCACTGCTTGGCGCTGTTTTTGTGGGT ATGGGCTTGCTTCTGTGA |
| Transcript | >Pro_DTO377G3_2|g1128.t1 ATGCATTCCAACTACATTTTGTCCGCGCTTGCCCTAGCTCTTCCCGTATACTCGCTTAGCTCCACCGCCAGTATG GGCTGCTACTCTGCTATCGAATCATTCAAGAACCAGGGCCCCTACACCTACCAATCACCAGGACATTGCCAGGCC CAATGCGCAGAGGACAATTACAAGGTCGCTGCTCTGAGCCGTGGCAACATGTGCTACTGCGGCAACGAAATGCCC CCAGATTCGGCTAAGATCGCCGACAGTAAATGTGATGTGCCCTGCGCTGGATGGCCTGCAGGAAGCTGTGGCGGC GCGGATACCTTTAATCTCATCCAGGCGGCTGAGAATCTCCAACCGTCTGCATCTGAAAATGCCTCCACTACTATT GCACCCACTGCTGCCACCGCAGCTGGCGGAATCATTGTCGCTGCCTCAACAGCCAACCCACCAACCAGCATCGTG ACCGCGGTATCAACTGCCAACTCTAAGAGTGGCAACGTTTTATCGAAGTCCGCTGTCTTCGCCTCCGCAACTGCC ACGCCCACGCCCACAAACAACGCTGCTGGAACAGTCTGCGCGGGATCCTCACTGCTTGGCGCTGTTTTTGTGGGT ATGGGCTTGCTTCTGTGA |
| Gene | >Pro_DTO377G3_2|g1128.t1 ATGCATTCCAACTACATTTTGTCCGCGCTTGCCCTAGCTCTTCCCGTATACTCGCTTAGCTCCACCGCCAGTATG GGCTGCTACTCTGCTATCGAATCATTCAAGAACCAGGGCCCCTACACCTACCAATCACCAGGACATTGCCAGGCC CAATGCGCAGAGGACAATTACAAGGTCGCTGCTCTGAGCCGTGGCAACATGTGCTACTGCGGCAACGAAATGCCC CCAGATTCGGCTAAGATCGCCGACAGTAAATGTGATGTGCCCTGCGCTGGATGGCCTGCAGGAAGCTGTGAGTCA CCTATAATATTCCATATGGAAACAAGATCATGACTGACAGCATACTTATCTAGGTGGCGGCGCGGATACCTTTAA TCTCATCCAGGCGGCTGAGAATCTCCAACCGTCTGCATCTGAAAATGCCTCCACTACTATTGCACCCACTGCTGC CACCGCAGCTGGCGGAATCATTGTCGCTGCCTCAACAGCCAACCCACCAACCAGCATCGTGACCGCGGTATCAAC TGCCAACTCTAAGAGTGGCAACGTTTTATCGAAGTCCGCTGTCTTCGCCTCCGCAACTGCCACGCCCACGCCCAC AAACAACGCTGCTGGAACAGTCTGCGCGGGATCCTCACTGCTTGGCGCTGTTTTTGTGGGTATGGGCTTGCTTCT GTGA |