© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1113.t1 |
| Gene name | |
| Location | scaffold_01:2942724..2944228 |
| Strand | + |
| Gene length (bp) | 1504 |
| Transcript length (bp) | 1191 |
| Coding sequence length (bp) | 1191 |
| Protein length (aa) | 397 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 45 | 64 | 19 |
| 3 | 94 | 111 | 17 |
| 4 | 123 | 145 | 22 |
| 5 | 169 | 191 | 22 |
| 6 | 203 | 225 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.71 | 1.54 | 9.89 |
| 5d_25C | Five days - 25 degrees Celsius | 3.06 | 0.59 | 5.54 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.40 | 0.14 | 4.66 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.03 | 0.00 | 2.10 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.16 | 0.00 | 0.46 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.48 | 0.70 | 6.25 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.149271 | no |
| 3d_25C | 7d_25C | 0.071063 | no |
| 3d_25C | 7d_15C | 0.057924 | no |
| 3d_25C | 7d_30C | 0.275260 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.689648 | no |
| 5d_25C | 7d_15C | 0.058466 | no |
| 5d_25C | 7d_30C | 0.840051 | no |
| 5d_25C | 10d_25C | 0.031978 | yes |
| 7d_25C | 7d_15C | 0.061291 | no |
| 7d_25C | 7d_30C | 0.526898 | no |
| 7d_25C | 10d_25C | 0.132409 | no |
| 7d_15C | 7d_30C | 0.055151 | no |
| 7d_15C | 10d_25C | 0.119073 | no |
| 7d_30C | 10d_25C | 0.015268 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1113.t1 MVDDHQHKTALGIVVAFTALGGIAVLLRLWSRWLSRSALTSDDCFIVVGYIISICQSITSWYYIKTNYVGFHIWD IPKDFNPRPGMNWNFANQILYNPALTVVKLSILLFLRRLDSRSRVVKYLTWSSFAVVITLFMTVLLVDIFQCNPV AYVYDTTIPGGKCINQGAFYVSTAALNLFTDIMVLSIPVIITARLQMPLRRKIAVCIILCLGGVATAVGVWRIVM LAQAFLSNTPNPDPTYAIGFCSSAVEINVAVVSACGPSLKAISSRIFPKLLGSSRGKSTYYGAGTGSGTGVGSRR LRSNAFKSTSHAQQSVYSTRGADYEMADPLGGPRVDVVGDFEMRKYKRGGSDSGLSSEDGKGIMKTTDISVGYSM EPRVEDGRSHDGRPASVDSIV* |
| Coding | >Pro_DTO377G3_2|g1113.t1 ATGGTTGACGACCATCAACATAAAACAGCCCTAGGGATTGTCGTCGCATTCACGGCCCTCGGTGGCATTGCTGTT CTACTTCGGCTCTGGAGCCGATGGCTATCACGATCGGCACTCACCAGTGATGACTGCTTCATTGTTGTGGGATAT ATCATCTCCATCTGCCAGTCTATTACCTCGTGGTACTACATCAAAACCAATTATGTCGGCTTTCATATTTGGGAT ATCCCCAAAGACTTCAATCCCAGACCTGGGATGAATTGGAACTTCGCAAATCAGATTCTCTACAATCCAGCCTTG ACCGTGGTAAAGCTGTCAATATTGTTGTTCCTGCGCCGACTCGATTCGCGCTCACGGGTGGTCAAATACCTCACC TGGAGCTCGTTCGCCGTGGTAATCACTCTTTTTATGACCGTTCTCCTCGTCGACATTTTTCAATGCAATCCAGTA GCATACGTCTACGACACGACGATCCCGGGCGGAAAATGCATCAACCAAGGCGCATTCTACGTCTCAACCGCAGCG CTAAACCTCTTCACCGATATAATGGTCCTCTCAATCCCGGTCATAATCACTGCGCGCCTTCAAATGCCCCTCCGA CGCAAGATTGCCGTGTGTATCATCCTATGCCTAGGCGGAGTAGCAACCGCCGTCGGAGTCTGGCGAATCGTAATG CTCGCCCAAGCATTTCTCTCCAACACCCCAAACCCAGACCCAACTTACGCAATCGGCTTCTGCAGCTCCGCAGTC GAAATAAACGTCGCAGTGGTATCAGCCTGCGGTCCGTCCCTGAAAGCCATCAGCAGCAGGATATTCCCCAAACTG CTCGGCAGCTCGCGAGGGAAATCCACCTACTACGGCGCCGGCACCGGCTCCGGCACCGGCGTGGGCTCACGCAGA CTCCGCTCGAATGCGTTCAAGTCTACCTCACACGCCCAGCAATCAGTGTACTCCACCCGCGGCGCAGATTACGAG ATGGCCGATCCGCTGGGCGGGCCGCGTGTTGATGTTGTTGGGGATTTTGAAATGCGCAAGTATAAGCGTGGGGGT AGTGATAGTGGTCTGAGTAGTGAGGATGGTAAGGGCATTATGAAGACGACTGATATCTCGGTCGGATATAGTATG GAGCCCCGGGTGGAGGATGGTCGGTCGCACGATGGTAGGCCGGCCAGTGTAGATAGTATAGTTTAA |
| Transcript | >Pro_DTO377G3_2|g1113.t1 ATGGTTGACGACCATCAACATAAAACAGCCCTAGGGATTGTCGTCGCATTCACGGCCCTCGGTGGCATTGCTGTT CTACTTCGGCTCTGGAGCCGATGGCTATCACGATCGGCACTCACCAGTGATGACTGCTTCATTGTTGTGGGATAT ATCATCTCCATCTGCCAGTCTATTACCTCGTGGTACTACATCAAAACCAATTATGTCGGCTTTCATATTTGGGAT ATCCCCAAAGACTTCAATCCCAGACCTGGGATGAATTGGAACTTCGCAAATCAGATTCTCTACAATCCAGCCTTG ACCGTGGTAAAGCTGTCAATATTGTTGTTCCTGCGCCGACTCGATTCGCGCTCACGGGTGGTCAAATACCTCACC TGGAGCTCGTTCGCCGTGGTAATCACTCTTTTTATGACCGTTCTCCTCGTCGACATTTTTCAATGCAATCCAGTA GCATACGTCTACGACACGACGATCCCGGGCGGAAAATGCATCAACCAAGGCGCATTCTACGTCTCAACCGCAGCG CTAAACCTCTTCACCGATATAATGGTCCTCTCAATCCCGGTCATAATCACTGCGCGCCTTCAAATGCCCCTCCGA CGCAAGATTGCCGTGTGTATCATCCTATGCCTAGGCGGAGTAGCAACCGCCGTCGGAGTCTGGCGAATCGTAATG CTCGCCCAAGCATTTCTCTCCAACACCCCAAACCCAGACCCAACTTACGCAATCGGCTTCTGCAGCTCCGCAGTC GAAATAAACGTCGCAGTGGTATCAGCCTGCGGTCCGTCCCTGAAAGCCATCAGCAGCAGGATATTCCCCAAACTG CTCGGCAGCTCGCGAGGGAAATCCACCTACTACGGCGCCGGCACCGGCTCCGGCACCGGCGTGGGCTCACGCAGA CTCCGCTCGAATGCGTTCAAGTCTACCTCACACGCCCAGCAATCAGTGTACTCCACCCGCGGCGCAGATTACGAG ATGGCCGATCCGCTGGGCGGGCCGCGTGTTGATGTTGTTGGGGATTTTGAAATGCGCAAGTATAAGCGTGGGGGT AGTGATAGTGGTCTGAGTAGTGAGGATGGTAAGGGCATTATGAAGACGACTGATATCTCGGTCGGATATAGTATG GAGCCCCGGGTGGAGGATGGTCGGTCGCACGATGGTAGGCCGGCCAGTGTAGATAGTATAGTTTAA |
| Gene | >Pro_DTO377G3_2|g1113.t1 ATGGTTGACGACCATCAACATAAAACAGCCCTAGGGATTGTCGTCGCATTCACGGCCCTCGGTGGCATTGCTGTT CTACTTCGGCTCTGGAGCCGATGGCTATCACGATCGGCACTCACCAGTGGTATGGAACGAACGCTCAGATCGGCA CTGGAATTGAACCATTAGAAGTGGTTGCTAACGAGACTCCCGACAGATGACTGCTTCATTGTTGTGGGATATGTA AGATCGTCAAATTCCAGATCCTTGAAGAGTGTATGCTAAATGGGTATTCTCTAGATCATCTCCATCTGCCAGTCT ATTACCTCGTGGTACTGTAAGTGATGTGATTCATCTAAGAAACAGAAGTGAGCAACTGCTAATTAAATCAGACAT CAAAACCAATTATGTCGGCTTTCATATTTGGGATATCCCCAAAGACTTCAATCCCAGACCTGGGATGAATGTAAG TCTACTACCCAGCGCCCGTAATAGCCAGAGGCTCACGGACAAAACAGTGGAACTTCGCAAATCAGATTCTCTACA ATCCAGCCTTGACCGTGGTAAAGCTGTCAATATTGTTGTTCCTGCGCCGACTCGATTCGCGCTCACGGGTGGTCA AATACCTCACCTGGAGCTCGTTCGCCGTGGTAATCACTCTTTTTATGACCGTTCTCCTCGTCGACATTTTTCAAT GCAATCCAGTAGCATACGTCTACGACACGACGATCCCGGGCGGAAAATGCATCAACCAAGGCGCATTCTACGTCT CAACCGCAGCGCTAAACCTCTTCACCGATATAATGGTCCTCTCAATCCCGGTCATAATCACTGCGCGCCTTCAAA TGCCCCTCCGACGCAAGATTGCCGTGTGTATCATCCTATGCCTAGGCGGAGTGTAAGTAAACCCCCGAAATCCAA CCCCAACCACCCATCATACACCGCACACAGCAATCTGACACATCCAACCAACAGAGCAACCGCCGTCGGAGTCTG GCGAATCGTAATGCTCGCCCAAGCATTTCTCTCCAACACCCCAAACCCAGACCCAACTTACGCAATCGGCTTCTG CAGCTCCGCAGTCGAAATAAACGTCGCAGTGGTATCAGCCTGCGGTCCGTCCCTGAAAGCCATCAGCAGCAGGAT ATTCCCCAAACTGCTCGGCAGCTCGCGAGGGAAATCCACCTACTACGGCGCCGGCACCGGCTCCGGCACCGGCGT GGGCTCACGCAGACTCCGCTCGAATGCGTTCAAGTCTACCTCACACGCCCAGCAATCAGTGTACTCCACCCGCGG CGCAGATTACGAGATGGCCGATCCGCTGGGCGGGCCGCGTGTTGATGTTGTTGGGGATTTTGAAATGCGCAAGTA TAAGCGTGGGGGTAGTGATAGTGGTCTGAGTAGTGAGGATGGTAAGGGCATTATGAAGACGACTGATATCTCGGT CGGATATAGTATGGAGCCCCGGGTGGAGGATGGTCGGTCGCACGATGGTAGGCCGGCCAGTGTAGATAGTATAGT TTAA |