© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1102.t1 |
| Gene name | |
| Location | scaffold_01:2915694..2917102 |
| Strand | + |
| Gene length (bp) | 1408 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02434 | Fringe | Fringe-like | 8.8E-08 | 173 | 280 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 101.99 | 62.64 | 141.33 |
| 5d_25C | Five days - 25 degrees Celsius | 67.12 | 40.19 | 94.05 |
| 7d_25C | Seven days - 25 degrees Celsius | 61.01 | 36.02 | 86.01 |
| 10d_25C | Ten days - 25 degrees Celsius | 50.83 | 29.63 | 72.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 77.12 | 46.93 | 107.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 57.01 | 32.98 | 81.05 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.045756 | yes |
| 3d_25C | 7d_25C | 0.011688 | yes |
| 3d_25C | 7d_15C | 0.220714 | no |
| 3d_25C | 7d_30C | 0.005235 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.755223 | no |
| 5d_25C | 7d_15C | 0.613658 | no |
| 5d_25C | 7d_30C | 0.552786 | no |
| 5d_25C | 10d_25C | 0.242839 | no |
| 7d_25C | 7d_15C | 0.346313 | no |
| 7d_25C | 7d_30C | 0.837561 | no |
| 7d_25C | 10d_25C | 0.500986 | no |
| 7d_15C | 7d_30C | 0.205140 | no |
| 7d_15C | 10d_25C | 0.052547 | no |
| 7d_30C | 10d_25C | 0.707624 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 3498 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1102.t1 MVSRRFSRRLIVVATVVALIFLYNIGFLSSHNRQWRPHFTPTPEITPALDENGEPTTYCPPLPGVEDVLVVMKTG VTESREKVPIHFRTTLRCIPHFVIYSDFAEEIEGVQIHDVLGNMDSAAKKNPDFDFYHRIVKYGRKGLEQHDFSD EANSAIGKPNNPGWKLDKWKFLPMAQEALRYKPDAKWFIFVEADTYISWPTVLTWLARFDHTKPHYLGTETQIAD VIFAHGGSGFMLSNPALQRASDEYTAREVELNEYTDQHWAGDCVLGKVLSDAGVNLHFTWPILQNSNLGELDEFT TDFYRRPWCFIAATLHHLSPTEIESLWKFEQKRWRDKNKRILLHSDLFREYIAPQIEAQPARTNWNNMADEEQPF AHTPDDCRLICETQTTCVQFAFREDKCFTSLNPRLGHAVPGGVATSGWNTSRIRDMTAKKGVCRKPDFGD* |
| Coding | >Pro_DTO377G3_2|g1102.t1 ATGGTGTCCCGCCGGTTCAGCCGTCGCCTGATTGTAGTTGCAACCGTCGTTGCGCTCATCTTCCTCTACAATATC GGCTTCCTCTCCAGTCACAATCGCCAATGGCGCCCTCACTTCACACCTACGCCGGAAATCACCCCGGCCCTCGAT GAGAATGGTGAACCAACCACATACTGCCCACCCCTACCCGGCGTCGAAGATGTGCTCGTGGTAATGAAGACCGGA GTGACCGAATCGCGCGAGAAAGTCCCCATCCACTTCCGAACAACCCTACGATGCATCCCCCACTTTGTAATCTAC TCCGACTTCGCCGAAGAAATCGAGGGCGTCCAGATCCACGATGTCCTCGGCAACATGGACAGCGCCGCAAAGAAA AACCCGGACTTTGACTTCTACCACCGCATCGTGAAATACGGCCGCAAGGGTCTGGAGCAACACGATTTCTCCGAC GAAGCCAACTCCGCCATCGGAAAACCCAACAATCCAGGCTGGAAGCTTGACAAATGGAAATTCCTCCCGATGGCC CAGGAAGCGCTCCGCTACAAGCCGGACGCGAAATGGTTCATCTTCGTCGAAGCGGACACGTACATCTCATGGCCA ACAGTCCTAACCTGGCTGGCCCGGTTCGACCACACCAAGCCACACTATCTCGGCACGGAGACTCAGATCGCGGAC GTCATCTTCGCCCACGGTGGCTCGGGCTTCATGCTCTCCAATCCCGCCCTACAGCGCGCCTCCGACGAGTACACC GCCCGCGAGGTCGAGCTGAACGAATATACAGACCAGCACTGGGCCGGCGACTGCGTGCTGGGTAAGGTCCTCAGC GACGCAGGCGTCAATCTACACTTTACATGGCCGATCCTTCAAAACTCCAACCTCGGCGAACTGGACGAGTTCACC ACGGACTTCTACCGAAGACCATGGTGTTTCATCGCCGCAACCCTGCACCACCTCTCCCCAACCGAGATCGAGAGC CTCTGGAAATTCGAACAAAAGCGCTGGCGTGATAAAAATAAACGCATCCTCCTGCACAGCGACCTCTTCCGCGAA TACATAGCCCCGCAAATAGAAGCACAACCCGCACGTACGAACTGGAACAACATGGCAGACGAAGAACAGCCCTTC GCGCACACACCCGACGACTGTCGCTTGATCTGCGAGACGCAGACCACTTGCGTGCAATTTGCCTTCCGCGAAGAT AAATGCTTCACGAGTCTCAACCCGCGTCTCGGACATGCCGTTCCGGGCGGTGTTGCGACGTCCGGCTGGAATACT AGTCGGATCCGCGATATGACGGCGAAGAAGGGAGTTTGTCGGAAGCCTGATTTCGGGGATTGA |
| Transcript | >Pro_DTO377G3_2|g1102.t1 ATGGTGTCCCGCCGGTTCAGCCGTCGCCTGATTGTAGTTGCAACCGTCGTTGCGCTCATCTTCCTCTACAATATC GGCTTCCTCTCCAGTCACAATCGCCAATGGCGCCCTCACTTCACACCTACGCCGGAAATCACCCCGGCCCTCGAT GAGAATGGTGAACCAACCACATACTGCCCACCCCTACCCGGCGTCGAAGATGTGCTCGTGGTAATGAAGACCGGA GTGACCGAATCGCGCGAGAAAGTCCCCATCCACTTCCGAACAACCCTACGATGCATCCCCCACTTTGTAATCTAC TCCGACTTCGCCGAAGAAATCGAGGGCGTCCAGATCCACGATGTCCTCGGCAACATGGACAGCGCCGCAAAGAAA AACCCGGACTTTGACTTCTACCACCGCATCGTGAAATACGGCCGCAAGGGTCTGGAGCAACACGATTTCTCCGAC GAAGCCAACTCCGCCATCGGAAAACCCAACAATCCAGGCTGGAAGCTTGACAAATGGAAATTCCTCCCGATGGCC CAGGAAGCGCTCCGCTACAAGCCGGACGCGAAATGGTTCATCTTCGTCGAAGCGGACACGTACATCTCATGGCCA ACAGTCCTAACCTGGCTGGCCCGGTTCGACCACACCAAGCCACACTATCTCGGCACGGAGACTCAGATCGCGGAC GTCATCTTCGCCCACGGTGGCTCGGGCTTCATGCTCTCCAATCCCGCCCTACAGCGCGCCTCCGACGAGTACACC GCCCGCGAGGTCGAGCTGAACGAATATACAGACCAGCACTGGGCCGGCGACTGCGTGCTGGGTAAGGTCCTCAGC GACGCAGGCGTCAATCTACACTTTACATGGCCGATCCTTCAAAACTCCAACCTCGGCGAACTGGACGAGTTCACC ACGGACTTCTACCGAAGACCATGGTGTTTCATCGCCGCAACCCTGCACCACCTCTCCCCAACCGAGATCGAGAGC CTCTGGAAATTCGAACAAAAGCGCTGGCGTGATAAAAATAAACGCATCCTCCTGCACAGCGACCTCTTCCGCGAA TACATAGCCCCGCAAATAGAAGCACAACCCGCACGTACGAACTGGAACAACATGGCAGACGAAGAACAGCCCTTC GCGCACACACCCGACGACTGTCGCTTGATCTGCGAGACGCAGACCACTTGCGTGCAATTTGCCTTCCGCGAAGAT AAATGCTTCACGAGTCTCAACCCGCGTCTCGGACATGCCGTTCCGGGCGGTGTTGCGACGTCCGGCTGGAATACT AGTCGGATCCGCGATATGACGGCGAAGAAGGGAGTTTGTCGGAAGCCTGATTTCGGGGATTGA |
| Gene | >Pro_DTO377G3_2|g1102.t1 ATGGTGTCCCGCCGGTTCAGCCGTCGCCTGATTGTAGTTGCAACCGTCGTTGCGCTCATCTTCCTCTACAATATC GGCTTCCTCTCCAGTCACAATCGCCAATGGCGCCCTCACTTCACACCTACGCCGGAAATCACCCCGGCCCTCGAT GAGAATGGTGAACCAACCACATACTGCCCACCCCTACCCGGCGTCGAAGATGTGCTCGTGGTAATGAAGACCGGA GTGACCGAATCGCGCGAGAAAGTCCCCATCCACTTCCGAACAACCCTACGATGCATCCCCCACTTTGTAATCTAC TCCGACTTCGCCGAAGAAATCGAGGGCGTCCAGATCCACGATGTCCTCGGCAACATGGACAGCGCCGCAAAGAAA AACCCGGACTTTGACTTCTACCACCGCATCGTGAAATACGGCCGCAAGGGTCTGGAGCAACACGATTTCTCCGAC GAAGCCAACTCCGCCATCGGAAAACCCAACAATCCAGGCTGGAAGCTTGACAAATGGAAATTCCTCCCGATGGCC CAGGAAGCGCTCCGCTACAAGCCGGACGCGAAATGGTTCATCTTCGTCGAAGCGGACACGTACATCTCATGGCCA ACAGTCCTAACCTGGCTGGCCCGGTTCGACCACACCAAGCCACACTATCTCGGCACGGAGACTCAGATCGCGGAC GTCATCTTCGCCCACGGTGGCTCGGGCTTCATGCTCTCCAATCCCGCCCTACAGCGCGCCTCCGACGAGTACACC GCCCGCGAGGTCGAGCTGAACGAATATACAGACCAGCACTGGGCCGGCGACTGCGTGCTGGGTAAGGTCCTCAGC GACGCAGGCGTCAATCTACACTTTACATGGCCGATCCTTCAAAACTCCAACCTCGGCGAACTGGACGAGTTCACC ACGGACTTCTACCGAAGACCATGGTGTTTCATCGCCGCAACCCTGCACCACCTCTCCCCAACCGAGATCGAGAGC CTCTGGAAATTCGAACAAAAGCGCTGGCGTGATGTGAGTGAACCCAATCCATTCTACCACTCCATAACATTGAAA AAAATTCCTAACCAATAACCCATTATAGAAAAATAAACGCATCCTCCTGCACAGCGACCTCTTCCGCGAATACAT AGCCCCGCAAATAGAAGCACAACCCGCACGTACGAACTGGAACAACATGGCAGACGAAGAACAGCCCTTCGCGCA CACACCCGACGACTGTCGCTTGATCTGCGAGACGCAGACCACTTGCGTGCAATTTGCCTTCCGCGAAGATAAATG CTTCACGAGTCTCAACCCGCGTCTCGGACATGCCGTTCCGGGCGGTGTTGCGACGTCCGGCTGGAATACTAGTCG GATCCGCGATATGACGGCGAAGAAGGGAGTTTGTCGGAAGCCTGATTTCGGGGATTGA |