© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g109.t1 |
| Gene name | |
| Location | scaffold_01:266264..267428 |
| Strand | - |
| Gene length (bp) | 1164 |
| Transcript length (bp) | 1098 |
| Coding sequence length (bp) | 1098 |
| Protein length (aa) | 366 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00085 | Thioredoxin | Thioredoxin | 1.8E-28 | 27 | 129 |
| PF00085 | Thioredoxin | Thioredoxin | 5.0E-27 | 146 | 250 |
| PF07749 | ERp29 | Endoplasmic reticulum protein ERp29, C-terminal domain | 7.3E-23 | 268 | 356 |
| PF13098 | Thioredoxin_2 | Thioredoxin-like domain | 8.0E-07 | 40 | 125 |
| PF13098 | Thioredoxin_2 | Thioredoxin-like domain | 4.1E-08 | 160 | 247 |
| PF04756 | OST3_OST6 | OST3 / OST6 family, transporter family | 4.6E-07 | 53 | 137 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005783 | endoplasmic reticulum | Yes |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0043226 | organelle | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043229 | intracellular organelle | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 137.50 | 84.48 | 190.51 |
| 5d_25C | Five days - 25 degrees Celsius | 144.39 | 88.66 | 200.12 |
| 7d_25C | Seven days - 25 degrees Celsius | 162.91 | 100.04 | 225.77 |
| 10d_25C | Ten days - 25 degrees Celsius | 218.35 | 133.16 | 303.53 |
| 7d_15C | Seven days - 15 degrees Celsius | 105.79 | 64.17 | 147.42 |
| 7d_30C | Seven days - 30 degrees Celsius | 189.06 | 115.20 | 262.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.875545 | no |
| 3d_25C | 7d_25C | 0.488690 | no |
| 3d_25C | 7d_15C | 0.248300 | no |
| 3d_25C | 7d_30C | 0.140072 | no |
| 3d_25C | 10d_25C | 0.023188 | yes |
| 5d_25C | 7d_25C | 0.647761 | no |
| 5d_25C | 7d_15C | 0.150824 | no |
| 5d_25C | 7d_30C | 0.228085 | no |
| 5d_25C | 10d_25C | 0.048448 | yes |
| 7d_25C | 7d_15C | 0.034353 | yes |
| 7d_25C | 7d_30C | 0.565595 | no |
| 7d_25C | 10d_25C | 0.187321 | no |
| 7d_15C | 7d_30C | 0.004045 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.590605 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g109.t1 MARLSFLLLGALSALSGVATASNSAVKDLIPTNFDEVVLAGKPALVEFFAPWCGHCKTLAPIYEELAQTFAFAED KVTIAKVDADENRSLGKRFGIQGFPTVKWFDGKSDKPEEYKGGRDLESLSAFITEKTGIKPRSAQKEASKVEMLN DASFKTAVGGDKDVLVAFTAPWCGHCKTLAPVWETLANDFALESDVVIAKVDAEAENSRALSKEQGITGFPTIKF FPKGSTEPEAYSGARSEEAFVKFINEKAGTHRTVGGGLDSLAGTIAVLDKIVSESVAAQKFDNLVADVKKAAEGL SDKYAEYYVKAAEKLSKNEEYAVKELARLQKVLAKGGSAPEKLDDILSRSNILRSFVGAEKHDEL* |
| Coding | >Pro_DTO377G3_2|g109.t1 ATGGCACGCTTAAGCTTCCTGCTCCTCGGAGCCCTCTCAGCCCTCAGCGGCGTCGCCACTGCAAGCAACTCCGCA GTGAAAGACCTAATCCCCACCAACTTCGACGAAGTTGTCCTGGCTGGCAAGCCCGCACTGGTCGAATTCTTCGCT CCCTGGTGCGGTCACTGCAAAACCCTTGCCCCGATTTACGAGGAGCTCGCGCAGACCTTCGCCTTCGCCGAAGAC AAGGTCACCATCGCCAAGGTCGATGCTGACGAGAACCGTTCGCTGGGCAAGCGCTTTGGTATCCAGGGCTTCCCT ACTGTCAAGTGGTTCGATGGAAAGAGTGACAAGCCCGAGGAATACAAGGGTGGTCGTGATCTCGAGAGCCTGTCT GCCTTCATCACCGAGAAGACTGGCATCAAGCCTCGTAGCGCACAGAAGGAGGCTAGCAAGGTCGAGATGCTGAAC GATGCTTCTTTCAAGACCGCTGTTGGTGGCGATAAGGATGTGCTGGTCGCTTTCACCGCGCCGTGGTGTGGACAC TGCAAGACCCTCGCTCCTGTCTGGGAAACCCTCGCCAACGACTTCGCCCTCGAGTCCGACGTTGTTATCGCCAAG GTCGACGCCGAAGCCGAGAATTCCCGTGCTTTGAGCAAGGAACAGGGTATTACCGGATTCCCTACCATCAAGTTC TTCCCCAAGGGCTCCACCGAACCCGAGGCCTACTCCGGCGCACGCTCCGAGGAGGCCTTTGTCAAGTTCATCAAC GAGAAGGCTGGTACTCACCGTACCGTCGGTGGCGGTCTTGACAGCCTGGCAGGCACCATCGCCGTTCTGGACAAG ATTGTTAGCGAGAGCGTCGCGGCGCAGAAGTTCGACAATCTGGTGGCTGATGTTAAGAAGGCCGCCGAGGGTCTG TCCGACAAGTACGCCGAGTACTATGTCAAGGCCGCGGAGAAGCTGAGCAAGAACGAGGAATATGCTGTCAAGGAG CTGGCCCGCCTCCAGAAGGTCCTGGCTAAGGGTGGCTCGGCCCCCGAGAAGCTGGATGACATTCTCTCCCGCAGC AACATTCTCCGTAGCTTTGTTGGCGCGGAGAAGCACGATGAGCTTTAA |
| Transcript | >Pro_DTO377G3_2|g109.t1 ATGGCACGCTTAAGCTTCCTGCTCCTCGGAGCCCTCTCAGCCCTCAGCGGCGTCGCCACTGCAAGCAACTCCGCA GTGAAAGACCTAATCCCCACCAACTTCGACGAAGTTGTCCTGGCTGGCAAGCCCGCACTGGTCGAATTCTTCGCT CCCTGGTGCGGTCACTGCAAAACCCTTGCCCCGATTTACGAGGAGCTCGCGCAGACCTTCGCCTTCGCCGAAGAC AAGGTCACCATCGCCAAGGTCGATGCTGACGAGAACCGTTCGCTGGGCAAGCGCTTTGGTATCCAGGGCTTCCCT ACTGTCAAGTGGTTCGATGGAAAGAGTGACAAGCCCGAGGAATACAAGGGTGGTCGTGATCTCGAGAGCCTGTCT GCCTTCATCACCGAGAAGACTGGCATCAAGCCTCGTAGCGCACAGAAGGAGGCTAGCAAGGTCGAGATGCTGAAC GATGCTTCTTTCAAGACCGCTGTTGGTGGCGATAAGGATGTGCTGGTCGCTTTCACCGCGCCGTGGTGTGGACAC TGCAAGACCCTCGCTCCTGTCTGGGAAACCCTCGCCAACGACTTCGCCCTCGAGTCCGACGTTGTTATCGCCAAG GTCGACGCCGAAGCCGAGAATTCCCGTGCTTTGAGCAAGGAACAGGGTATTACCGGATTCCCTACCATCAAGTTC TTCCCCAAGGGCTCCACCGAACCCGAGGCCTACTCCGGCGCACGCTCCGAGGAGGCCTTTGTCAAGTTCATCAAC GAGAAGGCTGGTACTCACCGTACCGTCGGTGGCGGTCTTGACAGCCTGGCAGGCACCATCGCCGTTCTGGACAAG ATTGTTAGCGAGAGCGTCGCGGCGCAGAAGTTCGACAATCTGGTGGCTGATGTTAAGAAGGCCGCCGAGGGTCTG TCCGACAAGTACGCCGAGTACTATGTCAAGGCCGCGGAGAAGCTGAGCAAGAACGAGGAATATGCTGTCAAGGAG CTGGCCCGCCTCCAGAAGGTCCTGGCTAAGGGTGGCTCGGCCCCCGAGAAGCTGGATGACATTCTCTCCCGCAGC AACATTCTCCGTAGCTTTGTTGGCGCGGAGAAGCACGATGAGCTTTAA |
| Gene | >Pro_DTO377G3_2|g109.t1 ATGGCACGCTTAAGCTTCCTGCTCCTCGGAGCCCTCTCAGCCCTCAGCGGCGTCGCCACTGCAAGCAACTCCGCA GTGAAAGACCTAATCCCCACCAACTTCGACGAAGTTGTCCTGGCTGGCAAGCCCGCACTGGTCGAATTCTTCGCT CCCTGGTGCGGTCACTGCAAAACCCTTGCCCCGATTTACGAGGAGCTCGCGCAGACCTTCGCCTTCGCCGAAGAC AAGGTCACCATCGCCAAGGTCGATGCTGACGAGAACCGTTCGCTGGGCAAGCGCTTTGGTATCCAGGGCTTCCCT ACTGTCAAGTGGTTCGATGGAAAGAGTGACAAGCCCGAGGAATACAAGGGTGGTCGTGATCTCGAGAGCCTGTCT GCCTTCATCACCGAGAAGACTGGCATCAAGCCTCGTAGCGCACAGAAGGAGGCTAGCAAGGTCGAGATGCTGAAC GATGCTTCTTTCAAGACCGCTGTTGGTGGCGATAAGGATGTGCTGGTCGCTTTCACCGCGCCGTGGTGTGGACGT GAGTTGACTCCCTAATTGTACCTCTAGTCTTGTGGTTTGTTTTGCTAATACGTCTTTTGTTCAGACTGCAAGACC CTCGCTCCTGTCTGGGAAACCCTCGCCAACGACTTCGCCCTCGAGTCCGACGTTGTTATCGCCAAGGTCGACGCC GAAGCCGAGAATTCCCGTGCTTTGAGCAAGGAACAGGGTATTACCGGATTCCCTACCATCAAGTTCTTCCCCAAG GGCTCCACCGAACCCGAGGCCTACTCCGGCGCACGCTCCGAGGAGGCCTTTGTCAAGTTCATCAACGAGAAGGCT GGTACTCACCGTACCGTCGGTGGCGGTCTTGACAGCCTGGCAGGCACCATCGCCGTTCTGGACAAGATTGTTAGC GAGAGCGTCGCGGCGCAGAAGTTCGACAATCTGGTGGCTGATGTTAAGAAGGCCGCCGAGGGTCTGTCCGACAAG TACGCCGAGTACTATGTCAAGGCCGCGGAGAAGCTGAGCAAGAACGAGGAATATGCTGTCAAGGAGCTGGCCCGC CTCCAGAAGGTCCTGGCTAAGGGTGGCTCGGCCCCCGAGAAGCTGGATGACATTCTCTCCCGCAGCAACATTCTC CGTAGCTTTGTTGGCGCGGAGAAGCACGATGAGCTTTAA |