© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1085.t1 |
| Gene name | |
| Location | scaffold_01:2874239..2876040 |
| Strand | + |
| Gene length (bp) | 1801 |
| Transcript length (bp) | 1641 |
| Coding sequence length (bp) | 1641 |
| Protein length (aa) | 547 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06687 | SUR7 | SUR7/PalI family | 9.0E-25 | 9 | 162 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005886 | plasma membrane | Yes |
| GO:0016020 | membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 33 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 83 | 105 | 22 |
| 3 | 118 | 140 | 22 |
| 4 | 150 | 172 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 34.62 | 20.06 | 49.19 |
| 5d_25C | Five days - 25 degrees Celsius | 51.37 | 30.79 | 71.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 47.94 | 28.67 | 67.21 |
| 10d_25C | Ten days - 25 degrees Celsius | 60.62 | 36.82 | 84.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 47.05 | 27.82 | 66.29 |
| 7d_30C | Seven days - 30 degrees Celsius | 58.27 | 35.38 | 81.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.073459 | no |
| 3d_25C | 7d_25C | 0.161481 | no |
| 3d_25C | 7d_15C | 0.197682 | no |
| 3d_25C | 7d_30C | 0.013211 | yes |
| 3d_25C | 10d_25C | 0.006742 | yes |
| 5d_25C | 7d_25C | 0.834553 | no |
| 5d_25C | 7d_15C | 0.778160 | no |
| 5d_25C | 7d_30C | 0.654388 | no |
| 5d_25C | 10d_25C | 0.535226 | no |
| 7d_25C | 7d_15C | 0.960065 | no |
| 7d_25C | 7d_30C | 0.439022 | no |
| 7d_25C | 10d_25C | 0.335161 | no |
| 7d_15C | 7d_30C | 0.393956 | no |
| 7d_15C | 10d_25C | 0.302309 | no |
| 7d_30C | 10d_25C | 0.906592 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1085.t1 MLLKPATPLTILLLIAFALLLLSCISTPIVKGIPLATFKDVDYGVFGYCKGSTCTNIHVGYTSNDISSTGDDFNL PSGTRKSLSSILIIHPVAAFLTLICLCLAIAAHFHAPSHSPRFLLALLILLLPTLLVSLLAFLVDILLFVPHLGW GGWIVLVATIILTSCGVVTCAMRRTLVSRKARKRRIAENSEMSGENYYNRQNAAAAAPPVPAPIDPKEAFVSHSL NSDSGPTFASFHVETRDSDDDRTPLNSRTPMSDTPAQPDHHGAPYRGPQDEFGNIPPQGPGPYGAGLMSRNPSDP RVRPQYSDGSMGSRRGGAPPGFNGRGRGGYPPRGGRGGRGGRGGPYMGPPRGPPGSRGGYMGPNPGRGGRGGIMP PRGPPVGYESGPGGPNRGFDAYGRPGSPPMDDPYSYGPPGQMHQPPPGPIGMAVSPETVGQAIEMTPQSRPQYEM HESTQPMSSVPQTLSAENHGAVPESPTSIYSRPNSYDPPRSGWGANDPRTVTPQPPQQNNISTNYYEDVDPRFAR RPSPPTNSGIPPSLTPGATHF* |
| Coding | >Pro_DTO377G3_2|g1085.t1 ATGTTGCTCAAACCCGCGACACCCCTCACCATCTTGCTGCTGATCGCCTTTGCGCTTTTGCTACTCTCATGTATC TCAACTCCTATTGTGAAGGGAATTCCTCTAGCAACTTTCAAAGATGTCGATTATGGTGTCTTTGGATATTGCAAG GGTAGTACCTGTACCAATATCCATGTGGGATACACGAGCAATGATATAAGTAGCACAGGCGATGATTTCAATCTC CCTTCCGGTACTCGAAAGTCACTGTCCTCGATTCTCATTATCCATCCAGTCGCCGCCTTCCTGACCCTTATTTGC CTCTGCCTGGCCATTGCGGCCCACTTCCATGCGCCCTCCCACTCGCCGCGCTTCCTATTGGCGCTTCTCATCTTG TTGCTGCCAACACTGCTCGTGTCTCTCCTCGCATTCCTCGTCGATATCTTGCTCTTTGTACCACATCTAGGATGG GGTGGTTGGATTGTGCTGGTCGCGACCATCATCCTCACCTCCTGTGGAGTGGTCACCTGTGCCATGCGCCGAACC CTTGTGAGTCGGAAGGCAAGGAAGCGTCGGATCGCGGAAAATTCTGAGATGAGTGGAGAGAACTATTATAACCGA CAGAATGCCGCTGCGGCTGCGCCCCCTGTTCCGGCTCCCATTGACCCCAAGGAAGCCTTTGTGTCGCACTCTCTC AACTCCGACTCGGGCCCAACATTCGCATCCTTCCACGTGGAAACGCGCGACAGTGATGACGATCGAACACCCCTC AACTCGCGGACTCCCATGAGCGATACCCCAGCACAACCGGACCATCACGGTGCTCCCTATCGCGGCCCGCAAGAT GAATTTGGCAATATCCCGCCTCAGGGCCCGGGCCCGTACGGTGCAGGTCTAATGTCACGGAATCCCTCCGATCCC CGGGTTCGCCCCCAATATTCCGATGGCAGTATGGGTTCTCGAAGAGGAGGCGCGCCGCCTGGCTTCAATGGACGC GGGCGGGGTGGATATCCTCCCCGGGGTGGACGCGGTGGACGCGGTGGACGTGGAGGACCTTACATGGGACCTCCT CGCGGCCCTCCTGGCTCCCGGGGTGGCTACATGGGGCCAAATCCAGGCCGTGGAGGTCGCGGTGGAATTATGCCA CCCCGGGGACCACCAGTCGGCTATGAGTCCGGTCCAGGCGGCCCCAACCGCGGTTTCGACGCATACGGTCGACCT GGGTCGCCTCCCATGGATGACCCTTATAGTTATGGGCCACCGGGTCAGATGCACCAGCCACCTCCCGGGCCCATT GGCATGGCCGTGTCACCGGAGACGGTAGGCCAAGCCATTGAGATGACTCCGCAATCTCGCCCGCAGTACGAGATG CATGAGTCGACTCAACCAATGAGCAGCGTACCGCAAACACTGTCAGCCGAAAACCACGGTGCCGTCCCTGAAAGC CCGACAAGCATATACAGTCGACCGAATTCCTATGATCCTCCTCGCTCGGGCTGGGGTGCAAATGATCCTCGCACT GTGACCCCGCAGCCACCGCAACAAAACAACATCAGTACCAATTACTACGAGGACGTGGATCCCCGTTTTGCTCGT CGGCCATCGCCTCCTACTAACTCTGGGATCCCCCCCTCTCTGACGCCTGGAGCTACTCACTTTTGA |
| Transcript | >Pro_DTO377G3_2|g1085.t1 ATGTTGCTCAAACCCGCGACACCCCTCACCATCTTGCTGCTGATCGCCTTTGCGCTTTTGCTACTCTCATGTATC TCAACTCCTATTGTGAAGGGAATTCCTCTAGCAACTTTCAAAGATGTCGATTATGGTGTCTTTGGATATTGCAAG GGTAGTACCTGTACCAATATCCATGTGGGATACACGAGCAATGATATAAGTAGCACAGGCGATGATTTCAATCTC CCTTCCGGTACTCGAAAGTCACTGTCCTCGATTCTCATTATCCATCCAGTCGCCGCCTTCCTGACCCTTATTTGC CTCTGCCTGGCCATTGCGGCCCACTTCCATGCGCCCTCCCACTCGCCGCGCTTCCTATTGGCGCTTCTCATCTTG TTGCTGCCAACACTGCTCGTGTCTCTCCTCGCATTCCTCGTCGATATCTTGCTCTTTGTACCACATCTAGGATGG GGTGGTTGGATTGTGCTGGTCGCGACCATCATCCTCACCTCCTGTGGAGTGGTCACCTGTGCCATGCGCCGAACC CTTGTGAGTCGGAAGGCAAGGAAGCGTCGGATCGCGGAAAATTCTGAGATGAGTGGAGAGAACTATTATAACCGA CAGAATGCCGCTGCGGCTGCGCCCCCTGTTCCGGCTCCCATTGACCCCAAGGAAGCCTTTGTGTCGCACTCTCTC AACTCCGACTCGGGCCCAACATTCGCATCCTTCCACGTGGAAACGCGCGACAGTGATGACGATCGAACACCCCTC AACTCGCGGACTCCCATGAGCGATACCCCAGCACAACCGGACCATCACGGTGCTCCCTATCGCGGCCCGCAAGAT GAATTTGGCAATATCCCGCCTCAGGGCCCGGGCCCGTACGGTGCAGGTCTAATGTCACGGAATCCCTCCGATCCC CGGGTTCGCCCCCAATATTCCGATGGCAGTATGGGTTCTCGAAGAGGAGGCGCGCCGCCTGGCTTCAATGGACGC GGGCGGGGTGGATATCCTCCCCGGGGTGGACGCGGTGGACGCGGTGGACGTGGAGGACCTTACATGGGACCTCCT CGCGGCCCTCCTGGCTCCCGGGGTGGCTACATGGGGCCAAATCCAGGCCGTGGAGGTCGCGGTGGAATTATGCCA CCCCGGGGACCACCAGTCGGCTATGAGTCCGGTCCAGGCGGCCCCAACCGCGGTTTCGACGCATACGGTCGACCT GGGTCGCCTCCCATGGATGACCCTTATAGTTATGGGCCACCGGGTCAGATGCACCAGCCACCTCCCGGGCCCATT GGCATGGCCGTGTCACCGGAGACGGTAGGCCAAGCCATTGAGATGACTCCGCAATCTCGCCCGCAGTACGAGATG CATGAGTCGACTCAACCAATGAGCAGCGTACCGCAAACACTGTCAGCCGAAAACCACGGTGCCGTCCCTGAAAGC CCGACAAGCATATACAGTCGACCGAATTCCTATGATCCTCCTCGCTCGGGCTGGGGTGCAAATGATCCTCGCACT GTGACCCCGCAGCCACCGCAACAAAACAACATCAGTACCAATTACTACGAGGACGTGGATCCCCGTTTTGCTCGT CGGCCATCGCCTCCTACTAACTCTGGGATCCCCCCCTCTCTGACGCCTGGAGCTACTCACTTTTGA |
| Gene | >Pro_DTO377G3_2|g1085.t1 ATGTTGCTCAAACCCGCGACACCCCTCACCATCTTGCTGCTGATCGCCTTTGCGCTTTTGCTACTCTCATGTATC TCAACTCCTATTGTGAAGGGAATTCCTCTAGCAACTTTCAAAGATGTCGATTATGGTGTCTTTGGATATTGCAAG GGTAGTACCTGTACCAATATCCATGTGGGATACACGAGCAGTAAGTCTCCCCCCTGCGTGTCTGCCTATTCTCCG CTAAGTTTCATGCAGATGATATAAGTAGCACAGGCGATGATTTCAATCTCCCTTCCGGTACTCGAAAGTCACTGT CCTCGATTCTCATTATCCATCCAGTCGCCGCCTTCCTGACCCTTATTTGCCTCTGCCTGGCCATTGCGGCCCACT TCCATGCGCCCTCCCACTCGCCGCGCTTCCTATTGGCGCTTCTCATCTTGTTGCTGCCAACACTGCTCGTGTCTC TCCTCGCATTCCTCGTCGATATCTTGCTCTTTGTACCACATCTAGGATGGGGTGGTTGGATTGTGCTGGTCGCGA CCATCATCCTCACCTCCTGTGGAGTGGTCACCTGTGCCATGCGCCGAACCCTTGTGAGTCGGAAGGCAAGGAAGC GTCGGATCGCGGAAAATTCTGAGATGAGTGGAGAGAACTATTATAACCGACAGAATGCCGCTGCGGCTGCGCCCC CTGTTCCGGCTCCCATTGACCCCAAGGAAGCCTTTGTGTCGCACTCTCTCAACTCCGACTCGGGCCCAACATTCG CATCCTTCCACGTGGAAACGCGCGACAGTGATGACGATCGAACACCCCTCAACTCGCGGACTCCCATGAGCGATA CCCCAGCACAACCGGACCATCACGGTGCTCCCTATCGCGGCCCGCAAGATGAATTTGGCAATATCCCGCCTCAGG GCCCGGGCCCGTACGGTGCAGGTCTAATGTCACGGAATCCCTCCGATCCCCGGGTTCGCCCCCAATATTCCGATG GCAGTATGGGTTCTCGAAGAGGAGGCGCGCCGCCTGGCTTCAATGGACGCGGGCGGGGTGGATATCCTCCCCGGG GTGGACGCGGTGGACGCGGTGGACGTGGAGGACCTTACATGGGACCTCCTCGCGGCCCTCCTGGCTCCCGGGGTG GCTACATGGGGCCAAATCCAGGCCGTGGAGGTCGCGGTGGAATTATGCCACCCCGGGGACCACCAGTCGGCTATG AGTCCGGTCCAGGCGGCCCCAACCGCGGTTTCGACGCATACGGTCGACCTGGGTCGCCTCCCATGGATGACCCTT ATAGTTATGGGCCACCGGGTCAGATGCACCAGCCACCTCCCGGGCCCATTGGCATGGCCGTGTCACCGGAGACGG TAGGCCAAGCCATTGAGATGACTCCGCAATCTCGCCCGCAGTACGAGATGCATGAGTCGACTCAACCAATGAGCA GCGTACCGCAAACACTGTCAGCCGAAAACCACGGTGCCGTCCCTGAAAGCCCGACAAGCATATACAGTCGACCGA AGTAAGTCGGAATGCTACGAATACCGTTCCTAAGTTGACCACTAACCTTTGTTCAGTTCCTATGATCCTCCTCGC TCGGGCTGGGGTGCAAATGATCCTCGCACTGTGACCCCGCAGCCACCGCAACAAAACAACATCAGTACCAATTAC TACGAGGACGTGGATCCCCGTTTTGCTCGTCGGCCATCGCCTCCTACTAACTCTGGGATCCCCCCCTCTCTGACG CCTGGAGCTACTCACTGTACGTACACTCACAGATCACACGTGTTGAAGGATTCTTGCTAACTTTCTCCTAGTTTG A |