© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1083.t1 |
| Gene name | |
| Location | scaffold_01:2868194..2870721 |
| Strand | - |
| Gene length (bp) | 2527 |
| Transcript length (bp) | 2436 |
| Coding sequence length (bp) | 2436 |
| Protein length (aa) | 812 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11915 | DUF3433 | Protein of unknown function (DUF3433) | 1.7E-10 | 279 | 369 |
| PF11915 | DUF3433 | Protein of unknown function (DUF3433) | 1.3E-27 | 590 | 680 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 238 | 260 | 22 |
| 2 | 281 | 303 | 22 |
| 3 | 347 | 369 | 22 |
| 4 | 390 | 412 | 22 |
| 5 | 542 | 564 | 22 |
| 6 | 585 | 607 | 22 |
| 7 | 661 | 683 | 22 |
| 8 | 696 | 718 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.38 | 0.71 | 4.04 |
| 5d_25C | Five days - 25 degrees Celsius | 1.01 | 0.12 | 1.89 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.90 | 0.11 | 1.68 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.55 | 0.01 | 1.09 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.35 | 0.17 | 2.52 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.90 | 0.43 | 3.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.055491 | no |
| 3d_25C | 7d_25C | 0.028642 | yes |
| 3d_25C | 7d_15C | 0.184643 | no |
| 3d_25C | 7d_30C | 0.655397 | no |
| 3d_25C | 10d_25C | 0.002297 | yes |
| 5d_25C | 7d_25C | 0.876801 | no |
| 5d_25C | 7d_15C | 0.625128 | no |
| 5d_25C | 7d_30C | 0.189080 | no |
| 5d_25C | 10d_25C | 0.282615 | no |
| 7d_25C | 7d_15C | 0.463135 | no |
| 7d_25C | 7d_30C | 0.113948 | no |
| 7d_25C | 10d_25C | 0.407905 | no |
| 7d_15C | 7d_30C | 0.512096 | no |
| 7d_15C | 10d_25C | 0.077167 | no |
| 7d_30C | 10d_25C | 0.012904 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1083.t1 MMNQARNFSLRSVNTSKPQLARSESQQSVAASDDYYSFSERTSSPESLATAMRFRTPDSHAPSPAMSQIQLAQED RESQRPPTSSTVRFVDDRAAHISPTSDGSRSNGTSRRSPSDYPGPSPTPGTDDSPYVRFAIDQITQDRTRGLQRN DSISTTTTGDYPTDRLIWDEGLGYFTRTRTPIRHDTPPVRPSYTSPSPQALPQTPMSVDPESFMAVDAPEKSMLY PPLDYLPLVLRPWALALTIFCCLLMIAGIVFCNVWSRGEEGLWNYVRQGDSRYFVLQFLPQIAAAIIIIWLFVIQ AAVYRIAPFSMMSAERGQGLVMNRLPILSQNFIFPDFSHFRHGEALFGFSLFTIWLSNFFAIPLLSCLFQAKYYI IDGQGVWRWASVQSVGWTLVGLYGVLTLGLIMLFIRFLRGSSGLMWDPVSLADLVSIIQRSNILHDFEHSETVPS VRESLDPRVLRLGYWKLSSKAEIFYGIGEVDAPVRTPSLHQTGKSREDQPHGVTKVRFDLEHNGAFANDPQDHHL YSPSTRYRWTPWFLRNVPVFIWTLIVFALFVAFVAVSFINSAIEGGFPPKLPTLPSTSAFSSSNFLYSFIPALIG NVFFLAWQPVDVYFRALQPYAELSSPSGASAERSILLSYPSSYPFQVTIQAIINRHFKVAWISLMSLLSLAIPIL AGGVFIALWFSDHDQIRIAAYLPAFYALIAFCGLYAVSFIAIWPGRRRYLPHDITTLADLMSYLYQSPLLSDKIL REPRSKTDLVTRLIVAPPSERHLPLYGFGIYVGRDGKEHLGIDRFHRPGRADMLITTGDMN* |
| Coding | >Pro_DTO377G3_2|g1083.t1 ATGATGAACCAGGCGAGAAACTTCAGCCTGCGCAGCGTTAACACAAGCAAACCGCAACTTGCCCGATCAGAATCT CAACAGTCCGTGGCTGCATCAGACGACTACTATTCATTCTCAGAACGAACCTCTAGTCCGGAGAGTCTAGCAACA GCCATGCGATTCAGGACTCCAGACTCCCACGCACCATCACCCGCCATGTCGCAAATACAGCTTGCCCAAGAAGAT CGCGAGTCCCAACGCCCACCAACATCCAGCACAGTTCGGTTCGTAGACGACAGAGCGGCCCACATCAGTCCCACA TCCGATGGATCAAGATCAAACGGGACTTCTCGCCGATCCCCCAGTGATTACCCGGGACCATCTCCGACTCCAGGC ACAGATGACTCCCCATACGTCCGGTTTGCAATCGACCAGATCACCCAAGACAGAACTCGGGGGCTCCAAAGGAAT GACTCTATTTCCACCACGACGACAGGTGACTATCCAACCGATAGACTTATATGGGACGAGGGACTCGGTTATTTC ACCCGCACGCGGACCCCCATTCGACATGACACGCCACCAGTGAGACCGTCCTATACATCTCCCTCACCACAGGCT TTGCCGCAAACGCCAATGTCAGTGGACCCCGAGTCCTTCATGGCTGTTGATGCGCCGGAGAAGAGCATGTTGTAT CCTCCCTTGGACTATCTGCCTCTTGTTCTGCGGCCGTGGGCTTTGGCGCTCACGATATTTTGCTGTCTGCTCATG ATAGCGGGTATAGTGTTTTGCAATGTTTGGTCCCGTGGTGAAGAGGGATTGTGGAACTACGTGCGTCAAGGCGAC TCGAGATATTTTGTGCTACAGTTCCTGCCACAGATAGCTGCCGCAATCATCATCATATGGTTATTCGTCATTCAA GCTGCGGTATATCGCATCGCACCATTTTCTATGATGTCAGCAGAGCGAGGGCAAGGTCTGGTGATGAACCGCCTG CCTATTCTCTCGCAGAACTTCATTTTCCCCGACTTCTCCCATTTCCGCCATGGTGAAGCCTTGTTCGGATTCTCT TTGTTCACAATTTGGCTTTCGAATTTCTTCGCCATCCCTCTGCTCAGCTGTCTCTTCCAGGCAAAGTACTATATC ATTGACGGACAAGGTGTCTGGCGATGGGCTTCGGTTCAATCCGTGGGCTGGACATTGGTGGGATTATATGGTGTT TTGACACTAGGCCTGATCATGCTTTTCATCCGTTTCCTTCGTGGCTCGTCTGGCTTGATGTGGGATCCCGTCAGC CTCGCAGATTTGGTCTCGATCATACAGCGATCGAATATCCTCCACGATTTTGAGCACTCTGAAACAGTTCCTTCG GTGCGAGAATCCCTCGACCCCCGAGTACTTCGACTGGGATACTGGAAACTCTCGAGCAAGGCCGAGATCTTCTAC GGAATCGGCGAAGTAGATGCCCCAGTGCGCACCCCATCTCTCCATCAGACAGGCAAAAGCCGAGAAGATCAACCA CACGGAGTTACCAAGGTTCGCTTTGATCTTGAGCACAACGGTGCATTCGCCAATGACCCACAAGATCACCACCTA TACTCGCCATCCACCCGTTATCGCTGGACACCTTGGTTTCTGCGCAACGTCCCAGTATTTATTTGGACTCTCATT GTCTTCGCCCTCTTCGTCGCTTTTGTCGCCGTTAGCTTTATCAACAGCGCCATCGAAGGCGGCTTCCCTCCCAAG CTACCAACACTCCCATCGACAAGTGCATTCTCCTCCTCCAACTTCCTATACAGCTTTATCCCCGCACTAATCGGA AACGTCTTCTTCCTGGCCTGGCAACCTGTCGACGTATACTTCCGAGCTCTCCAACCATACGCCGAACTCTCATCC CCCAGCGGCGCATCTGCCGAACGGAGCATCCTACTCTCCTACCCATCCTCCTACCCATTCCAGGTCACCATCCAG GCCATAATCAACCGCCACTTCAAAGTTGCCTGGATCTCCCTCATGAGCCTGCTATCTCTCGCCATCCCCATTCTC GCCGGAGGCGTCTTCATCGCCCTCTGGTTCTCCGACCACGACCAGATCCGCATCGCTGCCTATTTGCCAGCATTC TACGCTTTGATTGCCTTCTGTGGCCTATATGCCGTATCTTTCATAGCAATCTGGCCGGGCCGTCGTCGCTATCTC CCACACGATATCACAACCTTGGCTGATCTGATGAGCTATCTTTATCAGTCGCCTCTTCTGTCTGATAAAATCTTG CGCGAGCCCAGGAGCAAGACTGACCTCGTTACTCGTCTTATTGTTGCTCCACCCTCGGAGCGCCACCTGCCTTTG TACGGCTTTGGCATTTATGTCGGTCGTGACGGCAAGGAGCATCTTGGTATTGATCGGTTCCATCGGCCTGGTCGC GCTGATATGCTTATCACCACCGGCGATATGAATTAA |
| Transcript | >Pro_DTO377G3_2|g1083.t1 ATGATGAACCAGGCGAGAAACTTCAGCCTGCGCAGCGTTAACACAAGCAAACCGCAACTTGCCCGATCAGAATCT CAACAGTCCGTGGCTGCATCAGACGACTACTATTCATTCTCAGAACGAACCTCTAGTCCGGAGAGTCTAGCAACA GCCATGCGATTCAGGACTCCAGACTCCCACGCACCATCACCCGCCATGTCGCAAATACAGCTTGCCCAAGAAGAT CGCGAGTCCCAACGCCCACCAACATCCAGCACAGTTCGGTTCGTAGACGACAGAGCGGCCCACATCAGTCCCACA TCCGATGGATCAAGATCAAACGGGACTTCTCGCCGATCCCCCAGTGATTACCCGGGACCATCTCCGACTCCAGGC ACAGATGACTCCCCATACGTCCGGTTTGCAATCGACCAGATCACCCAAGACAGAACTCGGGGGCTCCAAAGGAAT GACTCTATTTCCACCACGACGACAGGTGACTATCCAACCGATAGACTTATATGGGACGAGGGACTCGGTTATTTC ACCCGCACGCGGACCCCCATTCGACATGACACGCCACCAGTGAGACCGTCCTATACATCTCCCTCACCACAGGCT TTGCCGCAAACGCCAATGTCAGTGGACCCCGAGTCCTTCATGGCTGTTGATGCGCCGGAGAAGAGCATGTTGTAT CCTCCCTTGGACTATCTGCCTCTTGTTCTGCGGCCGTGGGCTTTGGCGCTCACGATATTTTGCTGTCTGCTCATG ATAGCGGGTATAGTGTTTTGCAATGTTTGGTCCCGTGGTGAAGAGGGATTGTGGAACTACGTGCGTCAAGGCGAC TCGAGATATTTTGTGCTACAGTTCCTGCCACAGATAGCTGCCGCAATCATCATCATATGGTTATTCGTCATTCAA GCTGCGGTATATCGCATCGCACCATTTTCTATGATGTCAGCAGAGCGAGGGCAAGGTCTGGTGATGAACCGCCTG CCTATTCTCTCGCAGAACTTCATTTTCCCCGACTTCTCCCATTTCCGCCATGGTGAAGCCTTGTTCGGATTCTCT TTGTTCACAATTTGGCTTTCGAATTTCTTCGCCATCCCTCTGCTCAGCTGTCTCTTCCAGGCAAAGTACTATATC ATTGACGGACAAGGTGTCTGGCGATGGGCTTCGGTTCAATCCGTGGGCTGGACATTGGTGGGATTATATGGTGTT TTGACACTAGGCCTGATCATGCTTTTCATCCGTTTCCTTCGTGGCTCGTCTGGCTTGATGTGGGATCCCGTCAGC CTCGCAGATTTGGTCTCGATCATACAGCGATCGAATATCCTCCACGATTTTGAGCACTCTGAAACAGTTCCTTCG GTGCGAGAATCCCTCGACCCCCGAGTACTTCGACTGGGATACTGGAAACTCTCGAGCAAGGCCGAGATCTTCTAC GGAATCGGCGAAGTAGATGCCCCAGTGCGCACCCCATCTCTCCATCAGACAGGCAAAAGCCGAGAAGATCAACCA CACGGAGTTACCAAGGTTCGCTTTGATCTTGAGCACAACGGTGCATTCGCCAATGACCCACAAGATCACCACCTA TACTCGCCATCCACCCGTTATCGCTGGACACCTTGGTTTCTGCGCAACGTCCCAGTATTTATTTGGACTCTCATT GTCTTCGCCCTCTTCGTCGCTTTTGTCGCCGTTAGCTTTATCAACAGCGCCATCGAAGGCGGCTTCCCTCCCAAG CTACCAACACTCCCATCGACAAGTGCATTCTCCTCCTCCAACTTCCTATACAGCTTTATCCCCGCACTAATCGGA AACGTCTTCTTCCTGGCCTGGCAACCTGTCGACGTATACTTCCGAGCTCTCCAACCATACGCCGAACTCTCATCC CCCAGCGGCGCATCTGCCGAACGGAGCATCCTACTCTCCTACCCATCCTCCTACCCATTCCAGGTCACCATCCAG GCCATAATCAACCGCCACTTCAAAGTTGCCTGGATCTCCCTCATGAGCCTGCTATCTCTCGCCATCCCCATTCTC GCCGGAGGCGTCTTCATCGCCCTCTGGTTCTCCGACCACGACCAGATCCGCATCGCTGCCTATTTGCCAGCATTC TACGCTTTGATTGCCTTCTGTGGCCTATATGCCGTATCTTTCATAGCAATCTGGCCGGGCCGTCGTCGCTATCTC CCACACGATATCACAACCTTGGCTGATCTGATGAGCTATCTTTATCAGTCGCCTCTTCTGTCTGATAAAATCTTG CGCGAGCCCAGGAGCAAGACTGACCTCGTTACTCGTCTTATTGTTGCTCCACCCTCGGAGCGCCACCTGCCTTTG TACGGCTTTGGCATTTATGTCGGTCGTGACGGCAAGGAGCATCTTGGTATTGATCGGTTCCATCGGCCTGGTCGC GCTGATATGCTTATCACCACCGGCGATATGAATTAA |
| Gene | >Pro_DTO377G3_2|g1083.t1 ATGATGAACCAGGCGAGAAACTTCAGCCTGCGCAGCGTTAACAGTACGTGCATATAAGAACCCCTGCCCCGTTGT CTTTTTAACTACAGACATTACACAACTTCCAGAAGTCAAGTCAACTGATCCTTATATAGCAAGCAAACCGCAACT TGCCCGATCAGAATCTCAACAGTCCGTGGCTGCATCAGACGACTACTATTCATTCTCAGAACGAACCTCTAGTCC GGAGAGTCTAGCAACAGCCATGCGATTCAGGACTCCAGACTCCCACGCACCATCACCCGCCATGTCGCAAATACA GCTTGCCCAAGAAGATCGCGAGTCCCAACGCCCACCAACATCCAGCACAGTTCGGTTCGTAGACGACAGAGCGGC CCACATCAGTCCCACATCCGATGGATCAAGATCAAACGGGACTTCTCGCCGATCCCCCAGTGATTACCCGGGACC ATCTCCGACTCCAGGCACAGATGACTCCCCATACGTCCGGTTTGCAATCGACCAGATCACCCAAGACAGAACTCG GGGGCTCCAAAGGAATGACTCTATTTCCACCACGACGACAGGTGACTATCCAACCGATAGACTTATATGGGACGA GGGACTCGGTTATTTCACCCGCACGCGGACCCCCATTCGACATGACACGCCACCAGTGAGACCGTCCTATACATC TCCCTCACCACAGGCTTTGCCGCAAACGCCAATGTCAGTGGACCCCGAGTCCTTCATGGCTGTTGATGCGCCGGA GAAGAGCATGTTGTATCCTCCCTTGGACTATCTGCCTCTTGTTCTGCGGCCGTGGGCTTTGGCGCTCACGATATT TTGCTGTCTGCTCATGATAGCGGGTATAGTGTTTTGCAATGTTTGGTCCCGTGGTGAAGAGGGATTGTGGAACTA CGTGCGTCAAGGCGACTCGAGATATTTTGTGCTACAGTTCCTGCCACAGATAGCTGCCGCAATCATCATCATATG GTTATTCGTCATTCAAGCTGCGGTATATCGCATCGCACCATTTTCTATGATGTCAGCAGAGCGAGGGCAAGGTCT GGTGATGAACCGCCTGCCTATTCTCTCGCAGAACTTCATTTTCCCCGACTTCTCCCATTTCCGCCATGGTGAAGC CTTGTTCGGATTCTCTTTGTTCACAATTTGGCTTTCGAATTTCTTCGCCATCCCTCTGCTCAGCTGTCTCTTCCA GGCAAAGTACTATATCATTGACGGACAAGGTGTCTGGCGATGGGCTTCGGTTCAATCCGTGGGCTGGACATTGGT GGGATTATATGGTGTTTTGACACTAGGCCTGATCATGCTTTTCATCCGTTTCCTTCGTGGCTCGTCTGGCTTGAT GTGGGATCCCGTCAGCCTCGCAGATTTGGTCTCGATCATACAGCGATCGAATATCCTCCACGATTTTGAGCACTC TGAAACAGTTCCTTCGGTGCGAGAATCCCTCGACCCCCGAGTACTTCGACTGGGATACTGGAAACTCTCGAGCAA GGCCGAGATCTTCTACGGAATCGGCGAAGTAGATGCCCCAGTGCGCACCCCATCTCTCCATCAGACAGGCAAAAG CCGAGAAGATCAACCACACGGAGTTACCAAGGTTCGCTTTGATCTTGAGCACAACGGTGCATTCGCCAATGACCC ACAAGATCACCACCTATACTCGCCATCCACCCGTTATCGCTGGACACCTTGGTTTCTGCGCAACGTCCCAGTATT TATTTGGACTCTCATTGTCTTCGCCCTCTTCGTCGCTTTTGTCGCCGTTAGCTTTATCAACAGCGCCATCGAAGG CGGCTTCCCTCCCAAGCTACCAACACTCCCATCGACAAGTGCATTCTCCTCCTCCAACTTCCTATACAGCTTTAT CCCCGCACTAATCGGAAACGTCTTCTTCCTGGCCTGGCAACCTGTCGACGTATACTTCCGAGCTCTCCAACCATA CGCCGAACTCTCATCCCCCAGCGGCGCATCTGCCGAACGGAGCATCCTACTCTCCTACCCATCCTCCTACCCATT CCAGGTCACCATCCAGGCCATAATCAACCGCCACTTCAAAGTTGCCTGGATCTCCCTCATGAGCCTGCTATCTCT CGCCATCCCCATTCTCGCCGGAGGCGTCTTCATCGCCCTCTGGTTCTCCGACCACGACCAGATCCGCATCGCTGC CTATTTGCCAGCATTCTACGCTTTGATTGCCTTCTGTGGCCTATATGCCGTATCTTTCATAGCAATCTGGCCGGG CCGTCGTCGCTATCTCCCACACGATATCACAACCTTGGCTGATCTGATGAGCTATCTTTATCAGTCGCCTCTTCT GTCTGATAAAATCTTGCGCGAGCCCAGGAGCAAGACTGACCTCGTTACTCGTCTTATTGTTGCTCCACCCTCGGA GCGCCACCTGCCTTTGTACGGCTTTGGCATTTATGTCGGTCGTGACGGCAAGGAGCATCTTGGTATTGATCGGTT CCATCGGCCTGGTCGCGCTGATATGCTTATCACCACCGGCGATATGAATTAA |