© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1077.t1 |
| Gene name | |
| Location | scaffold_01:2856982..2858064 |
| Strand | + |
| Gene length (bp) | 1082 |
| Transcript length (bp) | 921 |
| Coding sequence length (bp) | 921 |
| Protein length (aa) | 307 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02630 | SCO1-SenC | SCO1/SenC | 5.5E-46 | 134 | 272 |
| PF00578 | AhpC-TSA | AhpC/TSA family | 6.6E-05 | 137 | 244 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0016209 | antioxidant activity | Yes |
| GO:0055114 | oxidation-reduction process | Yes |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 89 | 111 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1077.t1 MPSPIRLANGLLTRATRNITLESASTQRILPLLRSNTAPQCRAYTQAQRPRCDQNMRAMVSTQNKFSTSAFRAGP KTMGQMRQRNSTGPFSWKAALLFVLTGAGMMLYFRVEKARLERKRMTEMSKGVGKPKVGGPFVLKDLDGKEFTAE DLKGKYSFVYFGFTHCPDICPDELDKMAEIIEKVKAATGDEKIFMPVFITCDPVRDTPEVLREYLKEFHTGIVGL TGTYDQIKHVCKQYRVYFSTPRDVKPGEDYLVDHSIYFYLMDPDNDFVECIGRQDTPESASKVILEHINDWKREG KPLKTE* |
| Coding | >Pro_DTO377G3_2|g1077.t1 ATGCCTTCTCCTATAAGATTGGCCAATGGGCTCCTAACCCGAGCCACCCGCAATATCACCCTCGAATCCGCCTCA ACACAACGCATCCTCCCTCTCCTCCGAAGCAACACCGCACCACAATGCAGAGCCTACACCCAAGCACAGCGTCCA CGATGCGACCAAAACATGCGCGCCATGGTCTCCACACAGAACAAATTCTCAACCTCCGCCTTCCGAGCAGGCCCC AAGACAATGGGCCAGATGCGCCAGCGCAACTCGACCGGCCCGTTCTCGTGGAAGGCCGCACTGCTCTTCGTCTTG ACCGGCGCCGGCATGATGCTGTACTTCCGTGTTGAGAAAGCGCGTCTGGAGCGCAAGCGCATGACGGAGATGAGC AAGGGCGTTGGCAAGCCGAAGGTTGGCGGTCCGTTCGTGTTGAAGGATCTTGATGGGAAGGAGTTTACGGCGGAG GACTTGAAGGGCAAATACAGCTTTGTCTACTTCGGCTTCACTCACTGCCCTGATATCTGCCCCGACGAGCTGGAC AAGATGGCCGAGATTATCGAGAAGGTCAAGGCTGCTACCGGGGATGAGAAGATCTTCATGCCCGTTTTCATCACC TGCGATCCCGTCCGTGATACGCCTGAGGTGCTGCGCGAGTATCTGAAGGAGTTCCACACTGGCATCGTTGGCTTG ACTGGCACCTACGATCAGATCAAGCACGTGTGCAAGCAGTACCGTGTGTACTTTAGTACTCCCCGGGATGTGAAG CCCGGCGAGGATTACCTCGTGGACCACAGTATCTACTTTTATCTGATGGACCCCGACAATGACTTCGTCGAGTGT ATCGGCCGACAGGATACCCCCGAGTCTGCATCCAAGGTGATCCTGGAGCACATCAATGACTGGAAGAGAGAGGGG AAGCCACTCAAGACGGAGTAA |
| Transcript | >Pro_DTO377G3_2|g1077.t1 ATGCCTTCTCCTATAAGATTGGCCAATGGGCTCCTAACCCGAGCCACCCGCAATATCACCCTCGAATCCGCCTCA ACACAACGCATCCTCCCTCTCCTCCGAAGCAACACCGCACCACAATGCAGAGCCTACACCCAAGCACAGCGTCCA CGATGCGACCAAAACATGCGCGCCATGGTCTCCACACAGAACAAATTCTCAACCTCCGCCTTCCGAGCAGGCCCC AAGACAATGGGCCAGATGCGCCAGCGCAACTCGACCGGCCCGTTCTCGTGGAAGGCCGCACTGCTCTTCGTCTTG ACCGGCGCCGGCATGATGCTGTACTTCCGTGTTGAGAAAGCGCGTCTGGAGCGCAAGCGCATGACGGAGATGAGC AAGGGCGTTGGCAAGCCGAAGGTTGGCGGTCCGTTCGTGTTGAAGGATCTTGATGGGAAGGAGTTTACGGCGGAG GACTTGAAGGGCAAATACAGCTTTGTCTACTTCGGCTTCACTCACTGCCCTGATATCTGCCCCGACGAGCTGGAC AAGATGGCCGAGATTATCGAGAAGGTCAAGGCTGCTACCGGGGATGAGAAGATCTTCATGCCCGTTTTCATCACC TGCGATCCCGTCCGTGATACGCCTGAGGTGCTGCGCGAGTATCTGAAGGAGTTCCACACTGGCATCGTTGGCTTG ACTGGCACCTACGATCAGATCAAGCACGTGTGCAAGCAGTACCGTGTGTACTTTAGTACTCCCCGGGATGTGAAG CCCGGCGAGGATTACCTCGTGGACCACAGTATCTACTTTTATCTGATGGACCCCGACAATGACTTCGTCGAGTGT ATCGGCCGACAGGATACCCCCGAGTCTGCATCCAAGGTGATCCTGGAGCACATCAATGACTGGAAGAGAGAGGGG AAGCCACTCAAGACGGAGTAA |
| Gene | >Pro_DTO377G3_2|g1077.t1 ATGCCTTCTCCTATAAGATTGGCCAATGGGCTCCTAACCCGAGCCACCCGCAATATCACCCTCGAATCCGCCTCA ACACAACGCATCCTCCCTCTCCTCCGAAGCAACACCGCACCACAATGCAGAGCCTACACCCAAGCACAGCGTCCA CGATGCGACCAAAACATGCGCGCCATGGTCTCCACACAGAACAAATTCTCAACCTCCGCCTTCCGAGCAGGCCCC AAGACAATGGGCCAGATGCGCCAGCGCAACTCGACCGGCCCGTTCTCGTGGAAGGCCGCACTGCTCTTCGTCTTG ACCGGCGCCGGCATGATGCTGTACTTCCGTGTTGAGAAAGCGCGTCTGGAGCGCAAGCGCATGACGGAGATGAGC AAGGGCGTTGGCAAGCCGAAGGTTGGCGGTCCGTTCGTGTTGAAGGATCTTGATGGGAAGGAGTTTACGGCGGAG GACTTGAAGGGCAAATACAGCTTTGTGAGTTGATCCGGAGGATGGAATAGAGAGCATCAATGGATTCAATGGATT CAATGGATTTGACATGTTGGAACGGTACTCGCTAACACGATCTCGCTTTATTTCTTCAGGTCTACTTCGGCTTCA CTCACTGCCCTGATATCTGCCCCGACGAGCTGGACAAGATGGCCGAGATTATCGAGAAGGTCAAGGCTGCTACCG GGGATGAGAAGATCTTCATGCCCGTTTTCATCACCTGCGATCCCGTCCGTGATACGCCTGAGGTGCTGCGCGAGT ATCTGAAGGAGTTCCACACTGGCATCGTTGGCTTGACTGGCACCTACGATCAGATCAAGCACGTGTGCAAGCAGT ACCGTGTGTACTTTAGTACTCCCCGGGATGTGAAGCCCGGCGAGGATTACCTCGTGGACCACAGTATCTACTTTT ATCTGATGGGTGAGTGCTGATAAGACCTTATACATAAACGTATGCTAACCTTTATCATAGACCCCGACAATGACT TCGTCGAGTGTATCGGCCGACAGGATACCCCCGAGTCTGCATCCAAGGTGATCCTGGAGCACATCAATGACTGGA AGAGAGAGGGGAAGCCACTCAAGACGGAGTAA |