© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1071.t1 |
| Gene name | |
| Location | scaffold_01:2843395..2844599 |
| Strand | + |
| Gene length (bp) | 1204 |
| Transcript length (bp) | 1047 |
| Coding sequence length (bp) | 1047 |
| Protein length (aa) | 349 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05739 | SNARE | SNARE domain | 2.2E-12 | 293 | 345 |
| PF11416 | Syntaxin-5_N | Syntaxin-5 N-terminal, Sly1p-binding domain | 5.1E-07 | 1 | 23 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 328 | 347 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 94.14 | 57.20 | 131.09 |
| 5d_25C | Five days - 25 degrees Celsius | 111.01 | 67.50 | 154.52 |
| 7d_25C | Seven days - 25 degrees Celsius | 150.17 | 92.08 | 208.27 |
| 10d_25C | Ten days - 25 degrees Celsius | 215.07 | 130.71 | 299.44 |
| 7d_15C | Seven days - 15 degrees Celsius | 89.68 | 54.19 | 125.16 |
| 7d_30C | Seven days - 30 degrees Celsius | 90.24 | 54.02 | 126.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.529326 | no |
| 3d_25C | 7d_25C | 0.018560 | yes |
| 3d_25C | 7d_15C | 0.881121 | no |
| 3d_25C | 7d_30C | 0.903195 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.172223 | no |
| 5d_25C | 7d_15C | 0.379689 | no |
| 5d_25C | 7d_30C | 0.410867 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.010083 | yes |
| 7d_25C | 7d_30C | 0.014096 | yes |
| 7d_25C | 10d_25C | 0.086230 | no |
| 7d_15C | 7d_30C | 0.986540 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 3468 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1071.t1 MTGPSIQDRTSEFSAILGHAQKRLGTSKVGSQRQALLTDAQRRQANVSPQGPVQEAKAARSEFARRARDIGRGIT GTMAKLQRLAELAKRKTLFDDRPVEISELTYVIKQDLAALNQNIASLQALTQAQHPKSNRSKTDQEGEHNDNVVV MLQGKLADVGASFKEVLEVRTKNIQASRTRTENFVSSVSSKSHSALDAQRSDSPLYNTAGRRTPQPGYQGNSSDL LTLEPSNPSPLGRPSFQSDQQLMVMEEGESSNTYVQARGEAIEAIERTISELGGIFGQLAQMVSEQSEMIQRIDA NTEDVVDNVQGAQRELMKYWTRVSGNRWLIAKMFGILMIFFLLWVLIS* |
| Coding | >Pro_DTO377G3_2|g1071.t1 ATGACCGGCCCGTCGATACAAGACAGGACCAGCGAGTTCAGCGCGATCTTGGGCCACGCCCAGAAGCGCCTGGGG ACATCGAAAGTTGGTTCGCAGCGCCAGGCATTGTTGACTGATGCGCAAAGGCGACAAGCCAATGTGTCGCCCCAA GGTCCCGTACAGGAGGCGAAGGCGGCAAGGTCGGAGTTCGCACGGCGGGCGCGAGATATCGGAAGGGGGATAACT GGAACAATGGCAAAATTGCAGCGATTGGCTGAATTGGCGAAGCGGAAAACACTCTTCGACGACCGACCTGTCGAG ATCTCCGAATTGACATACGTGATTAAGCAAGACCTTGCCGCTTTAAACCAAAACATTGCCTCGCTGCAGGCGCTC ACCCAAGCGCAACACCCCAAATCGAATCGCTCGAAGACAGACCAGGAGGGAGAACACAATGACAATGTTGTTGTT ATGCTGCAGGGAAAGCTGGCCGATGTAGGCGCTAGTTTCAAAGAGGTACTGGAAGTCCGCACGAAGAATATTCAA GCATCCCGAACTCGAACCGAGAACTTCGTTTCCTCGGTATCATCCAAATCACACAGCGCCCTCGACGCACAGCGC TCAGACTCGCCTTTGTATAACACCGCGGGACGACGGACACCTCAGCCCGGATATCAAGGCAACTCCTCCGACCTT TTGACCCTCGAGCCCTCAAACCCTTCGCCATTGGGGCGTCCGTCCTTCCAATCAGATCAACAACTGATGGTAATG GAAGAAGGAGAATCGAGTAATACATATGTTCAAGCTCGAGGCGAAGCCATCGAAGCCATTGAGCGAACTATCAGC GAATTGGGTGGCATTTTTGGTCAGCTGGCGCAGATGGTTAGCGAACAGTCAGAAATGATTCAACGCATAGATGCC AATACCGAAGATGTGGTCGACAACGTCCAGGGAGCACAGAGAGAACTAATGAAGTATTGGACGCGTGTCTCCGGC AATCGCTGGCTCATTGCCAAAATGTTTGGTATTCTGATGATTTTCTTCCTTCTCTGGGTCCTGATTTCGTGA |
| Transcript | >Pro_DTO377G3_2|g1071.t1 ATGACCGGCCCGTCGATACAAGACAGGACCAGCGAGTTCAGCGCGATCTTGGGCCACGCCCAGAAGCGCCTGGGG ACATCGAAAGTTGGTTCGCAGCGCCAGGCATTGTTGACTGATGCGCAAAGGCGACAAGCCAATGTGTCGCCCCAA GGTCCCGTACAGGAGGCGAAGGCGGCAAGGTCGGAGTTCGCACGGCGGGCGCGAGATATCGGAAGGGGGATAACT GGAACAATGGCAAAATTGCAGCGATTGGCTGAATTGGCGAAGCGGAAAACACTCTTCGACGACCGACCTGTCGAG ATCTCCGAATTGACATACGTGATTAAGCAAGACCTTGCCGCTTTAAACCAAAACATTGCCTCGCTGCAGGCGCTC ACCCAAGCGCAACACCCCAAATCGAATCGCTCGAAGACAGACCAGGAGGGAGAACACAATGACAATGTTGTTGTT ATGCTGCAGGGAAAGCTGGCCGATGTAGGCGCTAGTTTCAAAGAGGTACTGGAAGTCCGCACGAAGAATATTCAA GCATCCCGAACTCGAACCGAGAACTTCGTTTCCTCGGTATCATCCAAATCACACAGCGCCCTCGACGCACAGCGC TCAGACTCGCCTTTGTATAACACCGCGGGACGACGGACACCTCAGCCCGGATATCAAGGCAACTCCTCCGACCTT TTGACCCTCGAGCCCTCAAACCCTTCGCCATTGGGGCGTCCGTCCTTCCAATCAGATCAACAACTGATGGTAATG GAAGAAGGAGAATCGAGTAATACATATGTTCAAGCTCGAGGCGAAGCCATCGAAGCCATTGAGCGAACTATCAGC GAATTGGGTGGCATTTTTGGTCAGCTGGCGCAGATGGTTAGCGAACAGTCAGAAATGATTCAACGCATAGATGCC AATACCGAAGATGTGGTCGACAACGTCCAGGGAGCACAGAGAGAACTAATGAAGTATTGGACGCGTGTCTCCGGC AATCGCTGGCTCATTGCCAAAATGTTTGGTATTCTGATGATTTTCTTCCTTCTCTGGGTCCTGATTTCGTGA |
| Gene | >Pro_DTO377G3_2|g1071.t1 ATGACCGGCCCGTCGATACAAGACAGGACCAGCGAGTTCAGCGCGATCTTGGGCCACGCCCAGAAGCGCCTGGGG ACATCGAAAGTTGGTTCGCAGCGCCAGGCATTGTTGACTGATGCGCAAAGGCGACAAGCCAATGTGTCGCCCCAA GGTCCCGTACAGGAGGCGAAGGCGGCAAGGTCGGAGTTCGCACGGCGGGCGCGAGATATCGGAAGGGGGATAACT GGAACAATGGCAAAATTGCAGCGATTGGCTGAATGTAAGTCTGGTCACGTCGCTCAAAATGCCAGCAATCTAACG AGGAAACAGTGGCGAAGCGGAAAACACTCTTCGACGACCGACCTGTCGAGATCTCCGAATTGACATACGTGATTA AGCAAGACCTTGCCGCTTTAAACCAAAACATTGCCTCGCTGCAGGCGCTCACCCAAGCGCAACACCCCAAATCGA ATCGCTCGAAGACAGACCAGGAGGGAGAACACAATGACAATGTGAGTGAGGCATGGGAAAGGCCGCGCACGGACA ATTCGCTGATTACCCATTTCAGGTTGTTGTTATGCTGCAGGGAAAGCTGGCCGATGTAGGCGCTAGTTTCAAAGA GGTACTGGAAGTCCGCACGAAGAATATTCAAGCATCCCGAACTCGAACCGAGAACTTCGTTTCCTCGGTATCATC CAAATCACACAGCGCCCTCGACGCACAGCGCTCAGACTCGCCTTTGTATAACACCGCGGGACGACGGACACCTCA GCCCGGATATCAAGGCAACTCCTCCGACCTTTTGACCCTCGAGCCCTCAAACCCTTCGCCATTGGGGCGTCCGTC CTTCCAATCAGATCAACAACTGATGGTAATGGAAGAAGGAGAATCGAGTAATACATATGTTCAAGCTCGAGGCGA AGCCATCGAAGCCATTGAGCGAACTATCAGCGAATTGGGTGGCATTTTTGGTCAGCTGGCGCAGATGGTTAGCGA ACAGTCAGAAATGATTCAACGCATAGATGCCAATACCGAAGATGTGGTCGACAACGTCCAGGGAGCACAGAGAGA ACTAATGAAGTATTGGACGCGTGTCTCCGGCAATCGCTGGCTCATTGCCAAAATGTTTGGTATTCTGATGGTATG TTCACTCATTAAATTTCTTGTCTGCTCATACTAATGACCGTTATAGATTTTCTTCCTTCTCTGGGTCCTGATTTC GTGA |