© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g106.t1 |
| Gene name | |
| Location | scaffold_01:262498..263727 |
| Strand | + |
| Gene length (bp) | 1229 |
| Transcript length (bp) | 1179 |
| Coding sequence length (bp) | 1179 |
| Protein length (aa) | 393 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01509 | TruB_N | TruB family pseudouridylate synthase (N terminal domain) | 4.1E-45 | 68 | 197 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006396 | RNA processing | Yes |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g106.t1 MSGEKILEGVFAVHKPQGVTSADVIRTLQKHFNPSKTFKPWLEEERARRDRESQFQRKRRRHQRLDVKIGHGGTL DPLATGVLITGIGKGTKSLQDFLACTKSYETIVTFGAETDTYDRLGKIVRRAPYEHITREAVEKALEQFRGEIMQ KPPIFSALRVNGKKLYEYAREGKMPPIEIKHRPVEVLNMEIVEWYEPGTHEYKWPEVEMTGDEKAVAEKLLDQEA SVPAPPAEGDATSQAPEASSTKRKSPPPADEVKDDGAEAAKKQKVSESEAAPIAPEPTAPEPATTEAPVVPAEEP KPQPPAVKIKMTVTSGFYVRSLAHDLGKAVGSCALMSELVRSRQGDYELSPDKVLEYKDLDAGEEVWGPKVEKFL TEWEEKRATKAKAEAAQ* |
| Coding | >Pro_DTO377G3_2|g106.t1 ATGTCTGGCGAGAAGATCCTTGAAGGCGTATTCGCCGTCCACAAGCCGCAAGGCGTCACCTCCGCCGACGTGATC CGTACTTTGCAGAAACACTTCAACCCCTCCAAGACATTCAAACCATGGTTAGAAGAAGAACGCGCCCGCCGCGAC CGTGAGAGCCAATTCCAGCGCAAACGCCGTCGCCACCAGCGCCTCGACGTCAAGATCGGCCACGGCGGCACCTTA GACCCGCTCGCGACAGGCGTGCTCATCACCGGAATCGGTAAGGGCACAAAGTCCCTCCAGGATTTCCTGGCCTGC ACCAAGAGCTATGAAACCATTGTGACCTTTGGCGCGGAGACGGATACCTACGATCGCCTCGGAAAAATCGTGCGC CGCGCGCCCTACGAACATATCACACGCGAAGCAGTCGAGAAAGCACTGGAACAGTTCCGTGGGGAAATCATGCAG AAACCGCCCATTTTCTCCGCTTTGCGAGTGAATGGAAAGAAGCTGTACGAGTATGCGCGCGAGGGCAAGATGCCG CCGATTGAGATTAAGCACCGGCCCGTTGAGGTCTTGAATATGGAGATTGTGGAGTGGTACGAGCCCGGCACACAC GAGTACAAATGGCCCGAGGTGGAGATGACTGGTGATGAGAAGGCTGTCGCTGAGAAGCTTCTTGATCAGGAAGCA TCGGTGCCTGCGCCGCCGGCCGAAGGTGACGCTACAAGCCAAGCGCCCGAAGCTTCTTCTACCAAGCGCAAGTCG CCACCCCCGGCGGATGAAGTGAAGGATGATGGTGCGGAGGCTGCTAAGAAGCAGAAGGTGTCCGAGAGCGAAGCG GCACCTATTGCACCTGAGCCTACTGCCCCCGAACCTGCAACTACAGAGGCCCCTGTTGTGCCTGCAGAGGAGCCC AAGCCCCAGCCTCCGGCGGTGAAGATTAAGATGACTGTCACGTCGGGCTTCTACGTTCGCTCGCTGGCACATGAT CTAGGCAAAGCTGTTGGTAGCTGTGCTCTGATGAGCGAGCTTGTGCGCAGCCGTCAAGGTGACTACGAACTCTCC CCTGATAAGGTTCTAGAGTACAAGGACCTTGATGCCGGCGAAGAGGTCTGGGGACCGAAGGTGGAGAAGTTCTTG ACAGAGTGGGAGGAGAAGAGAGCCACTAAGGCTAAAGCTGAAGCAGCCCAATAG |
| Transcript | >Pro_DTO377G3_2|g106.t1 ATGTCTGGCGAGAAGATCCTTGAAGGCGTATTCGCCGTCCACAAGCCGCAAGGCGTCACCTCCGCCGACGTGATC CGTACTTTGCAGAAACACTTCAACCCCTCCAAGACATTCAAACCATGGTTAGAAGAAGAACGCGCCCGCCGCGAC CGTGAGAGCCAATTCCAGCGCAAACGCCGTCGCCACCAGCGCCTCGACGTCAAGATCGGCCACGGCGGCACCTTA GACCCGCTCGCGACAGGCGTGCTCATCACCGGAATCGGTAAGGGCACAAAGTCCCTCCAGGATTTCCTGGCCTGC ACCAAGAGCTATGAAACCATTGTGACCTTTGGCGCGGAGACGGATACCTACGATCGCCTCGGAAAAATCGTGCGC CGCGCGCCCTACGAACATATCACACGCGAAGCAGTCGAGAAAGCACTGGAACAGTTCCGTGGGGAAATCATGCAG AAACCGCCCATTTTCTCCGCTTTGCGAGTGAATGGAAAGAAGCTGTACGAGTATGCGCGCGAGGGCAAGATGCCG CCGATTGAGATTAAGCACCGGCCCGTTGAGGTCTTGAATATGGAGATTGTGGAGTGGTACGAGCCCGGCACACAC GAGTACAAATGGCCCGAGGTGGAGATGACTGGTGATGAGAAGGCTGTCGCTGAGAAGCTTCTTGATCAGGAAGCA TCGGTGCCTGCGCCGCCGGCCGAAGGTGACGCTACAAGCCAAGCGCCCGAAGCTTCTTCTACCAAGCGCAAGTCG CCACCCCCGGCGGATGAAGTGAAGGATGATGGTGCGGAGGCTGCTAAGAAGCAGAAGGTGTCCGAGAGCGAAGCG GCACCTATTGCACCTGAGCCTACTGCCCCCGAACCTGCAACTACAGAGGCCCCTGTTGTGCCTGCAGAGGAGCCC AAGCCCCAGCCTCCGGCGGTGAAGATTAAGATGACTGTCACGTCGGGCTTCTACGTTCGCTCGCTGGCACATGAT CTAGGCAAAGCTGTTGGTAGCTGTGCTCTGATGAGCGAGCTTGTGCGCAGCCGTCAAGGTGACTACGAACTCTCC CCTGATAAGGTTCTAGAGTACAAGGACCTTGATGCCGGCGAAGAGGTCTGGGGACCGAAGGTGGAGAAGTTCTTG ACAGAGTGGGAGGAGAAGAGAGCCACTAAGGCTAAAGCTGAAGCAGCCCAATAG |
| Gene | >Pro_DTO377G3_2|g106.t1 ATGTCTGGCGAGAAGATCCTTGAAGGCGTATTCGGTGAGCTTGAATCCCACTAAAGCAAGACTTCGATCTAACAT CTCCGCTAGCCGTCCACAAGCCGCAAGGCGTCACCTCCGCCGACGTGATCCGTACTTTGCAGAAACACTTCAACC CCTCCAAGACATTCAAACCATGGTTAGAAGAAGAACGCGCCCGCCGCGACCGTGAGAGCCAATTCCAGCGCAAAC GCCGTCGCCACCAGCGCCTCGACGTCAAGATCGGCCACGGCGGCACCTTAGACCCGCTCGCGACAGGCGTGCTCA TCACCGGAATCGGTAAGGGCACAAAGTCCCTCCAGGATTTCCTGGCCTGCACCAAGAGCTATGAAACCATTGTGA CCTTTGGCGCGGAGACGGATACCTACGATCGCCTCGGAAAAATCGTGCGCCGCGCGCCCTACGAACATATCACAC GCGAAGCAGTCGAGAAAGCACTGGAACAGTTCCGTGGGGAAATCATGCAGAAACCGCCCATTTTCTCCGCTTTGC GAGTGAATGGAAAGAAGCTGTACGAGTATGCGCGCGAGGGCAAGATGCCGCCGATTGAGATTAAGCACCGGCCCG TTGAGGTCTTGAATATGGAGATTGTGGAGTGGTACGAGCCCGGCACACACGAGTACAAATGGCCCGAGGTGGAGA TGACTGGTGATGAGAAGGCTGTCGCTGAGAAGCTTCTTGATCAGGAAGCATCGGTGCCTGCGCCGCCGGCCGAAG GTGACGCTACAAGCCAAGCGCCCGAAGCTTCTTCTACCAAGCGCAAGTCGCCACCCCCGGCGGATGAAGTGAAGG ATGATGGTGCGGAGGCTGCTAAGAAGCAGAAGGTGTCCGAGAGCGAAGCGGCACCTATTGCACCTGAGCCTACTG CCCCCGAACCTGCAACTACAGAGGCCCCTGTTGTGCCTGCAGAGGAGCCCAAGCCCCAGCCTCCGGCGGTGAAGA TTAAGATGACTGTCACGTCGGGCTTCTACGTTCGCTCGCTGGCACATGATCTAGGCAAAGCTGTTGGTAGCTGTG CTCTGATGAGCGAGCTTGTGCGCAGCCGTCAAGGTGACTACGAACTCTCCCCTGATAAGGTTCTAGAGTACAAGG ACCTTGATGCCGGCGAAGAGGTCTGGGGACCGAAGGTGGAGAAGTTCTTGACAGAGTGGGAGGAGAAGAGAGCCA CTAAGGCTAAAGCTGAAGCAGCCCAATAG |