Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1057.t1
Gene name
Locationscaffold_01:2807066..2809174
Strand-
Gene length (bp)2108
Transcript length (bp)1596
Coding sequence length (bp)1596
Protein length (aa) 532

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-21 275 344
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-21 381 451

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 138.55 83.64 193.46
5d_25C Five days - 25 degrees Celsius 75.70 45.63 105.77
7d_25C Seven days - 25 degrees Celsius 76.31 46.03 106.59
10d_25C Ten days - 25 degrees Celsius 53.34 30.67 76.01
7d_15C Seven days - 15 degrees Celsius 52.45 31.01 73.89
7d_30C Seven days - 30 degrees Celsius 99.68 59.81 139.54

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.002297 yes
3d_25C 7d_25C 0.003197 yes
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.141670 no
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.983056 no
5d_25C 7d_15C 0.091618 no
5d_25C 7d_30C 0.236071 no
5d_25C 10d_25C 0.115777 no
7d_25C 7d_15C 0.088611 no
7d_25C 7d_30C 0.264808 no
7d_25C 10d_25C 0.112289 no
7d_15C 7d_30C 0.001804 yes
7d_15C 10d_25C 0.964400 no
7d_30C 10d_25C 0.002297 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1057.t1
MSRGFYLVRIVGFAAHTTRISLVTKFNMSKTSTKGADKAGKAGKASKALNKVKDAGVTKASQSPAAKSKAVASKV
ISKEKSKKTNKKKEPTPSSSESESESESDEDMKDASSSSSSESESEEEKPAPKKTEKKVEKKVAAKAESSDSSDS
DSDSSESEEEKPAPKKVEKKVAAKAESSDSSDSDSDSSESEDEKPAPKKAEKKAESSDSSDSESESESEAKKASS
DSESGSDSDSSDSDSEETPVSKKRKADAEPDATAKKSKTEDVPEGAVANLFIGNLSWNVDEEWLQREFSEFGELS
GVRIVTDRETGRSRGFGYVEYTNAADAAKAMEAKKGTDLDGRTINLDYAAPRQANPQQGADRSQDRARSYGDTTS
PESDTLFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFASIDEAKAAHAALNGHELEGRAI
RLDFSTPRPAGGDRGGFGGRGGGRGGGRGGFGGRGGGGGFGGRGGGGRGGGRGGFGDRGGRGGLNKGKGSIPEFK
GTKVTF*
Coding >Pro_DTO377G3_2|g1057.t1
ATGTCGCGTGGGTTCTATCTCGTAAGGATCGTGGGCTTTGCCGCACATACTACAAGAATTTCACTTGTCACTAAA
TTCAATATGTCCAAGACATCTACCAAGGGTGCCGATAAGGCCGGCAAGGCCGGTAAGGCCAGCAAGGCCTTGAAC
AAGGTCAAGGATGCCGGTGTCACCAAGGCTTCCCAGTCCCCCGCCGCCAAGAGCAAGGCCGTTGCCAGCAAGGTC
ATCTCCAAGGAGAAGTCCAAGAAGACCAACAAGAAGAAGGAGCCTACTCCCAGCTCCTCCGAGTCTGAGTCCGAG
TCCGAGTCTGATGAGGATATGAAGGATGCTTCCTCCAGCTCCAGCTCCGAGTCCGAGTCTGAGGAGGAGAAGCCC
GCTCCCAAGAAGACTGAGAAGAAGGTTGAGAAGAAGGTCGCTGCTAAGGCTGAGTCTTCTGACTCTTCCGACTCT
GACTCTGACTCTTCCGAGTCCGAAGAGGAGAAACCTGCCCCCAAGAAGGTCGAGAAGAAGGTTGCTGCTAAGGCT
GAGTCTTCTGACTCTTCCGACTCTGACTCTGACTCTTCCGAGTCCGAGGATGAGAAGCCCGCCCCCAAGAAGGCT
GAGAAGAAGGCTGAGTCTTCTGACTCTTCCGACTCTGAATCTGAGTCTGAGTCTGAGGCCAAGAAGGCCTCTTCT
GACTCCGAGTCTGGTTCCGACTCTGACAGCTCTGATTCTGACTCCGAGGAGACCCCTGTCTCCAAGAAGCGCAAG
GCTGATGCCGAGCCTGACGCCACTGCCAAGAAGTCCAAGACCGAGGATGTCCCCGAGGGTGCCGTCGCCAACCTG
TTCATTGGTAACCTGTCCTGGAACGTCGACGAGGAGTGGCTCCAGCGTGAGTTCTCCGAGTTCGGTGAGCTTTCC
GGTGTCCGCATTGTTACCGACCGTGAGACTGGCCGCTCGCGTGGCTTCGGCTACGTTGAGTACACCAACGCCGCC
GATGCTGCTAAGGCCATGGAGGCCAAGAAGGGTACCGATCTTGATGGTCGTACCATCAACCTCGACTACGCCGCT
CCCCGCCAGGCCAACCCCCAGCAGGGTGCCGACCGTTCCCAGGATCGTGCTCGCTCATACGGTGACACCACCAGC
CCCGAGAGCGACACTCTTTTCGTTGGTAACCTTCCTTTCAGCGCTACTGAGGATGCTCTCCACGAGGTCTTCGGC
GCCCAGGGCTCCGTTCTCGGAATCCGTCTCCCCACTGAGCAGGAGACTGGACGCCCCAAGGGCTTCGGTTACGTT
CAGTTCGCTTCCATTGATGAGGCCAAGGCTGCCCACGCTGCTCTCAACGGCCACGAGCTCGAGGGCCGTGCTATC
CGTCTTGACTTCTCTACTCCCCGTCCTGCCGGTGGTGACCGTGGTGGCTTCGGCGGCCGTGGTGGTGGTCGTGGT
GGTGGCCGTGGTGGCTTCGGTGGCCGCGGCGGCGGCGGTGGTTTCGGTGGACGTGGTGGTGGTGGTCGCGGCGGT
GGCCGTGGTGGCTTCGGCGACCGTGGCGGCCGTGGTGGCCTCAACAAGGGCAAGGGCAGCATCCCTGAGTTCAAG
GGTACCAAGGTCACTTTCTGA
Transcript >Pro_DTO377G3_2|g1057.t1
ATGTCGCGTGGGTTCTATCTCGTAAGGATCGTGGGCTTTGCCGCACATACTACAAGAATTTCACTTGTCACTAAA
TTCAATATGTCCAAGACATCTACCAAGGGTGCCGATAAGGCCGGCAAGGCCGGTAAGGCCAGCAAGGCCTTGAAC
AAGGTCAAGGATGCCGGTGTCACCAAGGCTTCCCAGTCCCCCGCCGCCAAGAGCAAGGCCGTTGCCAGCAAGGTC
ATCTCCAAGGAGAAGTCCAAGAAGACCAACAAGAAGAAGGAGCCTACTCCCAGCTCCTCCGAGTCTGAGTCCGAG
TCCGAGTCTGATGAGGATATGAAGGATGCTTCCTCCAGCTCCAGCTCCGAGTCCGAGTCTGAGGAGGAGAAGCCC
GCTCCCAAGAAGACTGAGAAGAAGGTTGAGAAGAAGGTCGCTGCTAAGGCTGAGTCTTCTGACTCTTCCGACTCT
GACTCTGACTCTTCCGAGTCCGAAGAGGAGAAACCTGCCCCCAAGAAGGTCGAGAAGAAGGTTGCTGCTAAGGCT
GAGTCTTCTGACTCTTCCGACTCTGACTCTGACTCTTCCGAGTCCGAGGATGAGAAGCCCGCCCCCAAGAAGGCT
GAGAAGAAGGCTGAGTCTTCTGACTCTTCCGACTCTGAATCTGAGTCTGAGTCTGAGGCCAAGAAGGCCTCTTCT
GACTCCGAGTCTGGTTCCGACTCTGACAGCTCTGATTCTGACTCCGAGGAGACCCCTGTCTCCAAGAAGCGCAAG
GCTGATGCCGAGCCTGACGCCACTGCCAAGAAGTCCAAGACCGAGGATGTCCCCGAGGGTGCCGTCGCCAACCTG
TTCATTGGTAACCTGTCCTGGAACGTCGACGAGGAGTGGCTCCAGCGTGAGTTCTCCGAGTTCGGTGAGCTTTCC
GGTGTCCGCATTGTTACCGACCGTGAGACTGGCCGCTCGCGTGGCTTCGGCTACGTTGAGTACACCAACGCCGCC
GATGCTGCTAAGGCCATGGAGGCCAAGAAGGGTACCGATCTTGATGGTCGTACCATCAACCTCGACTACGCCGCT
CCCCGCCAGGCCAACCCCCAGCAGGGTGCCGACCGTTCCCAGGATCGTGCTCGCTCATACGGTGACACCACCAGC
CCCGAGAGCGACACTCTTTTCGTTGGTAACCTTCCTTTCAGCGCTACTGAGGATGCTCTCCACGAGGTCTTCGGC
GCCCAGGGCTCCGTTCTCGGAATCCGTCTCCCCACTGAGCAGGAGACTGGACGCCCCAAGGGCTTCGGTTACGTT
CAGTTCGCTTCCATTGATGAGGCCAAGGCTGCCCACGCTGCTCTCAACGGCCACGAGCTCGAGGGCCGTGCTATC
CGTCTTGACTTCTCTACTCCCCGTCCTGCCGGTGGTGACCGTGGTGGCTTCGGCGGCCGTGGTGGTGGTCGTGGT
GGTGGCCGTGGTGGCTTCGGTGGCCGCGGCGGCGGCGGTGGTTTCGGTGGACGTGGTGGTGGTGGTCGCGGCGGT
GGCCGTGGTGGCTTCGGCGACCGTGGCGGCCGTGGTGGCCTCAACAAGGGCAAGGGCAGCATCCCTGAGTTCAAG
GGTACCAAGGTCACTTTCTGA
Gene >Pro_DTO377G3_2|g1057.t1
ATGGTCCCCAGCTCTTCACACTTTTTTCTCTTCCTCTTTCCATCCTCCCTACTTCTTTTCTCATCCCCCGTTCAA
TAAGCAGTCCGTCTCAGGTCGCTTTACTTATCCCATCTCTTGACTACCCAAGAGACCTCTACACACTAACTAACG
CAGTCGCGTGGGTTCTATCTCGTAAGTTCGTTTGGATACTCTGAGGGCTTCTTATCACTCTGAGGGCTGTGGGCT
TGACATACATCTATTCTGTGGGCTCTGTGGGACATCTTCCTCGTGGGTTACATATTCTAGACAGTATCAGCTGTC
GGTTGCTTGTGGGCTTGAAAACTTGTCCGTCCGTGGGTAGTGGGTTAACGTCCAGCTGTGATTTAGTTCACTTCT
GGCAGTTCTTCTGAGGGCTGTTGTTCCATTTTACACATCCAAAACACGGGTGCTTTGAGGGATCGTGGGCTTTGC
CGCACATACTACAAGAATTTCACTTGTCACTAAAGTATGTGCCACCCTACCCAAGCTACAAGCCAGCCTCCAAGC
CCTCTTCCTGAGTCCCCTCCATTTGATCGAAGAGCATTGGCTAACATTGATTTTTCCTCTAGTTCAATATGTCCA
AGACATCTACCAAGGGTGCCGATAAGGCCGGCAAGGCCGGTAAGGCCAGCAAGGCCTTGAACAAGGTCAAGGATG
CCGGTGTCACCAAGGCTTCCCAGTCCCCCGCCGCCAAGAGCAAGGCCGTTGCCAGCAAGGTCATCTCCAAGGAGA
AGTCCAAGAAGACCAACAAGAAGAAGGAGCCTACTCCCAGCTCCTCCGAGTCTGAGTCCGAGTCCGAGTCTGATG
AGGATATGAAGGATGCTTCCTCCAGCTCCAGCTCCGAGTCCGAGTCTGAGGAGGAGAAGCCCGCTCCCAAGAAGA
CTGAGAAGAAGGTTGAGAAGAAGGTCGCTGCTAAGGCTGAGTCTTCTGACTCTTCCGACTCTGACTCTGACTCTT
CCGAGTCCGAAGAGGAGAAACCTGCCCCCAAGAAGGTCGAGAAGAAGGTTGCTGCTAAGGCTGAGTCTTCTGACT
CTTCCGACTCTGACTCTGACTCTTCCGAGTCCGAGGATGAGAAGCCCGCCCCCAAGAAGGCTGAGAAGAAGGCTG
AGTCTTCTGACTCTTCCGACTCTGAATCTGAGTCTGAGTCTGAGGCCAAGAAGGCCTCTTCTGACTCCGAGTCTG
GTTCCGACTCTGACAGCTCTGATTCTGACTCCGAGGAGACCCCTGTCTCCAAGAAGCGCAAGGCTGATGCCGAGC
CTGACGCCACTGCCAAGAAGTCCAAGACCGAGGATGTCCCCGAGGGTGCCGTCGCCAACCTGTTCATTGGTAACC
TGTCCTGGAACGTCGACGAGGAGTGGCTCCAGCGTGAGTTCTCCGAGTTCGGTGAGCTTTCCGGTGTCCGCATTG
TTACCGACCGTGAGACTGGCCGCTCGCGTGGCTTCGGCTACGTTGAGTACACCAACGCCGCCGATGCTGCTAAGG
CCATGGAGGCCAAGAAGGGTACCGATCTTGATGGTCGTACCATCAACCTCGACTACGCCGCTCCCCGCCAGGCCA
ACCCCCAGCAGGGTGCCGACCGTTCCCAGGATCGTGCTCGCTCATACGGTGACACCACCAGCCCCGAGAGCGACA
CTCTTTTCGTTGGTAACCTTCCTTTCAGCGCTACTGAGGATGCTCTCCACGAGGTCTTCGGCGCCCAGGGCTCCG
TTCTCGGAATCCGTCTCCCCACTGAGCAGGAGACTGGACGCCCCAAGGGCTTCGGTTACGTTCAGTTCGCTTCCA
TTGATGAGGCCAAGGCTGCCCACGCTGCTCTCAACGGCCACGAGCTCGAGGGCCGTGCTATCCGTCTTGACTTCT
CTACTCCCCGTCCTGCCGGTGGTGACCGTGGTGGCTTCGGCGGCCGTGGTGGTGGTCGTGGTGGTGGCCGTGGTG
GCTTCGGTGGCCGCGGCGGCGGCGGTGGTTTCGGTGGACGTGGTGGTGGTGGTCGCGGCGGTGGCCGTGGTGGCT
TCGGCGACCGTGGCGGCCGTGGTGGCCTCAACAAGGGCAAGGGCAGCATCCCTGAGTTCAAGGGTACCAAGGTCA
CTTTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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