© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1053.t1 |
| Gene name | |
| Location | scaffold_01:2800281..2801581 |
| Strand | - |
| Gene length (bp) | 1300 |
| Transcript length (bp) | 1242 |
| Coding sequence length (bp) | 1242 |
| Protein length (aa) | 414 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00848 | Ring_hydroxyl_A | Ring hydroxylating alpha subunit (catalytic domain) | 1.5E-11 | 190 | 244 |
| PF00848 | Ring_hydroxyl_A | Ring hydroxylating alpha subunit (catalytic domain) | 9.8E-06 | 265 | 365 |
| PF00355 | Rieske | Rieske [2Fe-2S] domain | 9.5E-15 | 50 | 137 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051537 | 2 iron, 2 sulfur cluster binding | Yes |
| GO:0044237 | cellular metabolic process | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0009987 | cellular process | No |
| GO:0051540 | metal cluster binding | No |
| GO:0051536 | iron-sulfur cluster binding | No |
| GO:0008152 | metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.66 | 0.17 | 3.15 |
| 5d_25C | Five days - 25 degrees Celsius | 2.01 | 0.27 | 3.76 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.37 | 0.10 | 2.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.96 | 0.00 | 2.12 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.79 | 0.00 | 1.67 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.13 | 0.26 | 4.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.774251 | no |
| 3d_25C | 7d_25C | 0.774717 | no |
| 3d_25C | 7d_15C | 0.219801 | no |
| 3d_25C | 7d_30C | 0.702290 | no |
| 3d_25C | 10d_25C | 0.426088 | no |
| 5d_25C | 7d_25C | 0.515489 | no |
| 5d_25C | 7d_15C | 0.116026 | no |
| 5d_25C | 7d_30C | 0.941536 | no |
| 5d_25C | 10d_25C | 0.269505 | no |
| 7d_25C | 7d_15C | 0.390532 | no |
| 7d_25C | 7d_30C | 0.448854 | no |
| 7d_25C | 10d_25C | 0.634303 | no |
| 7d_15C | 7d_30C | 0.086230 | no |
| 7d_15C | 10d_25C | 0.844121 | no |
| 7d_30C | 10d_25C | 0.231210 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1053.t1 MASMFNYFGFNATAPKEETKASAVRALPASWYTSPEMYELERRAIFSKRWLFITHSMRLKNTGDWLRYELAGFDF IITRDRQGNINAFHNVCRHRAYPVVEKEGSGNSQILACRYHGWSYGLNGKLAKATKYQELSNFDKEQNGLFRIHL KVDVNGFIWVNMDANEVPEVSWEDHFRDVDKQERYKAYNFDDYDLDHTYALEGDYNWKILADNFNECYHCPTTHA DIPEFLNLESFDSDLKDGHIQHHCESTPEQIEKGLYTASTYYFPMSAMVVSPHFIMIQKFLPSSPKNSKMDYEIY RNRNSSETDFKLISEMYARVMGEDKVLCNNAQKNLDRNVFTSGELHPKYEKAPLFFQSTVRDVITEHFEREKSAG REIWPAKPKVSCNADVSEKDEQICAALACGAQKEVLAW* |
| Coding | >Pro_DTO377G3_2|g1053.t1 ATGGCTTCAATGTTCAACTATTTCGGCTTCAATGCCACTGCCCCCAAGGAAGAAACAAAAGCTTCAGCCGTTCGT GCCTTGCCTGCATCATGGTACACTTCACCAGAGATGTACGAACTAGAGCGCCGAGCCATATTCTCGAAGAGATGG CTCTTCATCACCCACAGCATGCGGTTGAAGAACACCGGAGACTGGCTCCGCTACGAGCTTGCAGGCTTCGACTTC ATCATCACTCGCGACCGACAGGGTAACATCAACGCATTCCACAACGTGTGCAGACACCGTGCGTACCCGGTCGTT GAGAAAGAGGGATCTGGGAACTCGCAAATCCTCGCTTGCCGATACCACGGCTGGTCCTACGGACTGAATGGCAAA CTCGCCAAGGCTACGAAATACCAAGAGCTGAGCAACTTCGATAAGGAGCAGAACGGTCTCTTCAGAATCCATCTG AAGGTCGACGTCAACGGCTTCATCTGGGTCAACATGGATGCGAATGAAGTCCCGGAAGTGTCATGGGAAGACCAT TTCCGAGACGTCGACAAGCAAGAACGCTACAAAGCCTATAACTTCGATGACTACGATCTCGATCACACTTATGCG CTCGAGGGCGACTATAACTGGAAGATTCTGGCGGATAACTTCAACGAATGTTACCACTGCCCTACAACACACGCC GATATTCCTGAGTTCCTTAACCTGGAATCTTTCGACAGTGATCTCAAAGATGGACATATCCAACACCACTGCGAA TCTACACCAGAGCAAATCGAGAAGGGCCTTTACACGGCCAGTACTTACTACTTCCCCATGTCTGCCATGGTTGTC TCGCCGCACTTCATCATGATACAGAAATTCCTCCCCTCAAGCCCGAAAAACTCCAAGATGGACTACGAGATCTAC CGGAACCGGAACTCCTCTGAGACAGACTTCAAGCTTATCAGTGAGATGTACGCGCGCGTCATGGGAGAAGACAAA GTCCTCTGCAACAACGCACAGAAGAACCTCGACCGGAATGTCTTTACGAGCGGCGAGCTTCACCCTAAGTACGAG AAGGCCCCGCTGTTCTTCCAGAGCACAGTCCGCGATGTCATCACGGAGCACTTTGAGCGTGAGAAATCCGCGGGC CGGGAGATCTGGCCGGCGAAACCGAAAGTGTCATGCAATGCAGATGTCAGCGAGAAGGATGAGCAGATCTGTGCG GCCCTGGCCTGTGGAGCTCAGAAAGAGGTTTTAGCTTGGTGA |
| Transcript | >Pro_DTO377G3_2|g1053.t1 ATGGCTTCAATGTTCAACTATTTCGGCTTCAATGCCACTGCCCCCAAGGAAGAAACAAAAGCTTCAGCCGTTCGT GCCTTGCCTGCATCATGGTACACTTCACCAGAGATGTACGAACTAGAGCGCCGAGCCATATTCTCGAAGAGATGG CTCTTCATCACCCACAGCATGCGGTTGAAGAACACCGGAGACTGGCTCCGCTACGAGCTTGCAGGCTTCGACTTC ATCATCACTCGCGACCGACAGGGTAACATCAACGCATTCCACAACGTGTGCAGACACCGTGCGTACCCGGTCGTT GAGAAAGAGGGATCTGGGAACTCGCAAATCCTCGCTTGCCGATACCACGGCTGGTCCTACGGACTGAATGGCAAA CTCGCCAAGGCTACGAAATACCAAGAGCTGAGCAACTTCGATAAGGAGCAGAACGGTCTCTTCAGAATCCATCTG AAGGTCGACGTCAACGGCTTCATCTGGGTCAACATGGATGCGAATGAAGTCCCGGAAGTGTCATGGGAAGACCAT TTCCGAGACGTCGACAAGCAAGAACGCTACAAAGCCTATAACTTCGATGACTACGATCTCGATCACACTTATGCG CTCGAGGGCGACTATAACTGGAAGATTCTGGCGGATAACTTCAACGAATGTTACCACTGCCCTACAACACACGCC GATATTCCTGAGTTCCTTAACCTGGAATCTTTCGACAGTGATCTCAAAGATGGACATATCCAACACCACTGCGAA TCTACACCAGAGCAAATCGAGAAGGGCCTTTACACGGCCAGTACTTACTACTTCCCCATGTCTGCCATGGTTGTC TCGCCGCACTTCATCATGATACAGAAATTCCTCCCCTCAAGCCCGAAAAACTCCAAGATGGACTACGAGATCTAC CGGAACCGGAACTCCTCTGAGACAGACTTCAAGCTTATCAGTGAGATGTACGCGCGCGTCATGGGAGAAGACAAA GTCCTCTGCAACAACGCACAGAAGAACCTCGACCGGAATGTCTTTACGAGCGGCGAGCTTCACCCTAAGTACGAG AAGGCCCCGCTGTTCTTCCAGAGCACAGTCCGCGATGTCATCACGGAGCACTTTGAGCGTGAGAAATCCGCGGGC CGGGAGATCTGGCCGGCGAAACCGAAAGTGTCATGCAATGCAGATGTCAGCGAGAAGGATGAGCAGATCTGTGCG GCCCTGGCCTGTGGAGCTCAGAAAGAGGTTTTAGCTTGGTGA |
| Gene | >Pro_DTO377G3_2|g1053.t1 ATGGCTTCAATGTTCAACTATTTCGGCTTCAATGCCACTGCCCCCAAGGAAGAAACAAAAGCTTCAGCCGTTCGT GCCTTGCCTGCATCATGGTACACTTCACCAGAGATGTACGAACTAGAGCGCCGAGCCATATTCTCGAAGAGATGG CTCTTCATCACCCACAGCATGCGGTTGAAGAACACCGGAGACTGGCTCCGCTACGAGCTTGCAGGCTTCGACTTC ATCATCACTCGCGACCGACAGGGTAACATCAACGCATTCCACAACGTGTGCAGACACCGTGCGTACCCGGTCGTT GAGAAAGAGGGATCTGGGAACTCGCAAATCCTCGCTTGCCGATACCACGGCTGGTCCTACGGACTGAATGGCAAA CTCGCCAAGGCTACGAAATACCAAGAGCTGAGCAACTTCGATAAGGAGCAGAACGGTCTCTTCAGAATCCATCTG AAGGTCGACGTCAACGGCTTCATCTGGGTCAACATGGATGCGAATGAAGTCCCGGAAGTGTCATGGGAAGACCAT TTCCGAGACGTCGACAAGCAAGAACGCTACAAAGCCTATAACTTCGATGACTACGATCTCGATCACACTTATGCG CTCGAGGGCGACTATAACTGGAAGATTCTGGCGGATAACTTCAACGAATGTTACCACTGCCCTACAACACACGCC GATATTCCTGAGTTCCTTAACCTGGAATCTTTCGACAGTGATCTCAAAGATGGACATATCCAACACCACTGCGAA TCTACACCAGAGCAAATCGAGAAGGGCCTTTACACGGCCAGTACTTACTACTTCCCCATGTCTGCCATGGTTGTC TCGTAAGTGTTTCCAGTTTGTGCTTTCTCCAATAGTACATCGTCTAACATGTACATACAGGCCGCACTTCATCAT GATACAGAAATTCCTCCCCTCAAGCCCGAAAAACTCCAAGATGGACTACGAGATCTACCGGAACCGGAACTCCTC TGAGACAGACTTCAAGCTTATCAGTGAGATGTACGCGCGCGTCATGGGAGAAGACAAAGTCCTCTGCAACAACGC ACAGAAGAACCTCGACCGGAATGTCTTTACGAGCGGCGAGCTTCACCCTAAGTACGAGAAGGCCCCGCTGTTCTT CCAGAGCACAGTCCGCGATGTCATCACGGAGCACTTTGAGCGTGAGAAATCCGCGGGCCGGGAGATCTGGCCGGC GAAACCGAAAGTGTCATGCAATGCAGATGTCAGCGAGAAGGATGAGCAGATCTGTGCGGCCCTGGCCTGTGGAGC TCAGAAAGAGGTTTTAGCTTGGTGA |