© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1048.t1 |
| Gene name | |
| Location | scaffold_01:2792809..2793727 |
| Strand | - |
| Gene length (bp) | 918 |
| Transcript length (bp) | 918 |
| Coding sequence length (bp) | 918 |
| Protein length (aa) | 306 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 1.4E-11 | 40 | 97 |
| PF12831 | FAD_oxidored | FAD dependent oxidoreductase | 2.6E-10 | 37 | 74 |
| PF01593 | Amino_oxidase | Flavin containing amine oxidoreductase | 4.2E-07 | 47 | 147 |
| PF00890 | FAD_binding_2 | FAD binding domain | 1.8E-06 | 37 | 74 |
| PF00070 | Pyr_redox | Pyridine nucleotide-disulphide oxidoreductase | 1.7E-05 | 38 | 77 |
| PF03486 | HI0933_like | HI0933-like protein | 9.1E-06 | 37 | 71 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.16 | 0.00 | 0.48 |
| 5d_25C | Five days - 25 degrees Celsius | 1.32 | 0.00 | 2.71 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.23 | 0.09 | 4.37 |
| 10d_25C | Ten days - 25 degrees Celsius | 7.55 | 2.37 | 12.73 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.32 | 0.42 | 6.21 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.40 | 0.64 | 6.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.096905 | no |
| 3d_25C | 7d_25C | 0.069424 | no |
| 3d_25C | 7d_15C | 0.068588 | no |
| 3d_25C | 7d_30C | 0.068588 | no |
| 3d_25C | 10d_25C | 0.068588 | no |
| 5d_25C | 7d_25C | 0.406173 | no |
| 5d_25C | 7d_15C | 0.077004 | no |
| 5d_25C | 7d_30C | 0.061471 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.524399 | no |
| 7d_25C | 7d_30C | 0.466073 | no |
| 7d_25C | 10d_25C | 0.013211 | yes |
| 7d_15C | 7d_30C | 0.978081 | no |
| 7d_15C | 10d_25C | 0.061799 | no |
| 7d_30C | 10d_25C | 0.047696 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1048.t1 MFLSRLPSVVTFWLAVAITGNTFDPKNYAKADVLVCDVAVVGGGSSGTYAAINLRKMGQSVVVVERKKHLGGHTN TYTDKATGLTVDYGVQSFLNSSIALDYFAHFNISLVKYTESNATISLTDFNTGNPVLFNPSRNLTGWAIQVAQYP WLDSTWEIPQPVPPDLLLPLGDFLVKYNISDAAFNIYFSSQGISNPLQQLTVNVMKMVDAAYLREIAGARLNAAD KNNSELYVKSLAELGSDALISSTVTAAARPQTGRGVSLVVKTTTGFKLVQASKLLVNIPPTLENMRPFNFNLQEL QMFSQ* |
| Coding | >Pro_DTO377G3_2|g1048.t1 ATGTTTCTGTCAAGACTTCCTTCCGTGGTCACATTTTGGCTAGCCGTGGCAATCACCGGCAATACATTCGATCCC AAAAATTATGCCAAAGCAGATGTCCTAGTCTGCGATGTTGCCGTGGTTGGAGGGGGATCCTCGGGAACATATGCC GCCATCAACCTGCGCAAGATGGGCCAGAGCGTAGTGGTTGTGGAAAGAAAGAAGCACCTGGGTGGCCACACAAAC ACCTACACTGATAAAGCTACCGGTCTCACTGTGGACTATGGGGTGCAATCGTTCCTGAACAGCTCTATCGCGCTT GACTATTTTGCCCACTTCAACATCTCCCTTGTCAAATATACCGAATCTAATGCCACTATCTCGCTGACAGATTTT AATACAGGAAACCCTGTGCTATTCAACCCCAGTCGAAACCTGACCGGATGGGCCATTCAGGTCGCGCAGTACCCT TGGCTGGACTCTACCTGGGAAATCCCTCAGCCTGTTCCTCCAGACCTGCTCCTACCATTGGGGGACTTCCTTGTC AAATATAACATCTCGGATGCTGCTTTTAATATTTATTTCAGCTCCCAGGGAATTTCAAATCCACTACAGCAGTTA ACAGTCAACGTGATGAAGATGGTGGACGCTGCATACTTGAGAGAAATAGCAGGTGCTAGGCTCAACGCCGCAGAT AAAAACAACTCTGAGCTATATGTCAAGTCTCTTGCTGAGCTGGGTTCAGATGCTCTCATCTCCTCAACCGTTACA GCTGCTGCAAGACCACAAACAGGGCGAGGCGTCTCACTCGTCGTCAAGACGACCACGGGATTCAAGCTCGTCCAA GCATCTAAGCTTTTAGTCAACATTCCCCCAACTTTAGAAAATATGAGGCCATTCAATTTCAATCTACAGGAGCTT CAGATGTTCTCGCAGTGA |
| Transcript | >Pro_DTO377G3_2|g1048.t1 ATGTTTCTGTCAAGACTTCCTTCCGTGGTCACATTTTGGCTAGCCGTGGCAATCACCGGCAATACATTCGATCCC AAAAATTATGCCAAAGCAGATGTCCTAGTCTGCGATGTTGCCGTGGTTGGAGGGGGATCCTCGGGAACATATGCC GCCATCAACCTGCGCAAGATGGGCCAGAGCGTAGTGGTTGTGGAAAGAAAGAAGCACCTGGGTGGCCACACAAAC ACCTACACTGATAAAGCTACCGGTCTCACTGTGGACTATGGGGTGCAATCGTTCCTGAACAGCTCTATCGCGCTT GACTATTTTGCCCACTTCAACATCTCCCTTGTCAAATATACCGAATCTAATGCCACTATCTCGCTGACAGATTTT AATACAGGAAACCCTGTGCTATTCAACCCCAGTCGAAACCTGACCGGATGGGCCATTCAGGTCGCGCAGTACCCT TGGCTGGACTCTACCTGGGAAATCCCTCAGCCTGTTCCTCCAGACCTGCTCCTACCATTGGGGGACTTCCTTGTC AAATATAACATCTCGGATGCTGCTTTTAATATTTATTTCAGCTCCCAGGGAATTTCAAATCCACTACAGCAGTTA ACAGTCAACGTGATGAAGATGGTGGACGCTGCATACTTGAGAGAAATAGCAGGTGCTAGGCTCAACGCCGCAGAT AAAAACAACTCTGAGCTATATGTCAAGTCTCTTGCTGAGCTGGGTTCAGATGCTCTCATCTCCTCAACCGTTACA GCTGCTGCAAGACCACAAACAGGGCGAGGCGTCTCACTCGTCGTCAAGACGACCACGGGATTCAAGCTCGTCCAA GCATCTAAGCTTTTAGTCAACATTCCCCCAACTTTAGAAAATATGAGGCCATTCAATTTCAATCTACAGGAGCTT CAGATGTTCTCGCAGTGA |
| Gene | >Pro_DTO377G3_2|g1048.t1 ATGTTTCTGTCAAGACTTCCTTCCGTGGTCACATTTTGGCTAGCCGTGGCAATCACCGGCAATACATTCGATCCC AAAAATTATGCCAAAGCAGATGTCCTAGTCTGCGATGTTGCCGTGGTTGGAGGGGGATCCTCGGGAACATATGCC GCCATCAACCTGCGCAAGATGGGCCAGAGCGTAGTGGTTGTGGAAAGAAAGAAGCACCTGGGTGGCCACACAAAC ACCTACACTGATAAAGCTACCGGTCTCACTGTGGACTATGGGGTGCAATCGTTCCTGAACAGCTCTATCGCGCTT GACTATTTTGCCCACTTCAACATCTCCCTTGTCAAATATACCGAATCTAATGCCACTATCTCGCTGACAGATTTT AATACAGGAAACCCTGTGCTATTCAACCCCAGTCGAAACCTGACCGGATGGGCCATTCAGGTCGCGCAGTACCCT TGGCTGGACTCTACCTGGGAAATCCCTCAGCCTGTTCCTCCAGACCTGCTCCTACCATTGGGGGACTTCCTTGTC AAATATAACATCTCGGATGCTGCTTTTAATATTTATTTCAGCTCCCAGGGAATTTCAAATCCACTACAGCAGTTA ACAGTCAACGTGATGAAGATGGTGGACGCTGCATACTTGAGAGAAATAGCAGGTGCTAGGCTCAACGCCGCAGAT AAAAACAACTCTGAGCTATATGTCAAGTCTCTTGCTGAGCTGGGTTCAGATGCTCTCATCTCCTCAACCGTTACA GCTGCTGCAAGACCACAAACAGGGCGAGGCGTCTCACTCGTCGTCAAGACGACCACGGGATTCAAGCTCGTCCAA GCATCTAAGCTTTTAGTCAACATTCCCCCAACTTTAGAAAATATGAGGCCATTCAATTTCAATCTACAGGAGCTT CAGATGTTCTCGCAGTGA |