Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g1038.t1
Gene name
Locationscaffold_01:2765849..2766935
Strand-
Gene length (bp)1086
Transcript length (bp)1032
Coding sequence length (bp)1032
Protein length (aa) 344

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 7.98 2.57 13.40
5d_25C Five days - 25 degrees Celsius 5.46 1.42 9.50
7d_25C Seven days - 25 degrees Celsius 7.15 2.19 12.10
10d_25C Ten days - 25 degrees Celsius 4.28 0.63 7.94
7d_15C Seven days - 15 degrees Celsius 5.37 1.33 9.41
7d_30C Seven days - 30 degrees Celsius 20.35 8.56 32.14

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.392165 no
3d_25C 7d_25C 0.842906 no
3d_25C 7d_15C 0.357048 no
3d_25C 7d_30C 0.006000 yes
3d_25C 10d_25C 0.171107 no
5d_25C 7d_25C 0.571577 no
5d_25C 7d_15C 0.980207 no
5d_25C 7d_30C 0.000700 yes
5d_25C 10d_25C 0.671231 no
7d_25C 7d_15C 0.538403 no
7d_25C 7d_30C 0.001278 yes
7d_25C 10d_25C 0.268759 no
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.693220 no
7d_30C 10d_25C 0.000700 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g1038.t1
MLRISLLQLLFVTLLALSAVFAAELVQGTSQRESLQDADIKAASLHDALHALSAKFRHGIFQTDLHAAEALQGEE
PVIASLMRLAKRQDNATASSEATTLPASTVTSASAESTSEPATTSAAETSATETSTPSATSETSATSAPSTTSSA
SATSETSETSSAIATSETSSSSAEPTTSAQPTSTTASSTSETTETSASSTTSTSTTAQPTTATTASSTTTTESTQ
STTSIPSTLSTATSTSSSSSSSSSSSTSSTTNQSTTSAQTTEQTSLSTSTFKSTSTLPDGSLSTITSITVITPTA
AHKTSTTTVGKPGLQTNAAAMATGMAREVVAMVGGAVVVAMAL*
Coding >Pro_DTO377G3_2|g1038.t1
ATGCTGCGTATCAGCTTGCTTCAATTGCTCTTTGTGACGCTGCTCGCTCTGTCTGCAGTCTTCGCAGCAGAGTTA
GTGCAGGGGACCTCGCAACGTGAGTCTCTCCAGGATGCCGACATCAAGGCAGCCTCGCTCCATGATGCCTTGCAT
GCTCTCTCCGCCAAATTCCGTCATGGAATCTTCCAGACTGACCTTCATGCCGCCGAAGCTCTGCAAGGTGAGGAA
CCCGTCATTGCCAGCCTGATGAGACTGGCCAAGCGCCAGGACAATGCTACTGCTAGCTCGGAGGCAACCACGCTG
CCGGCGTCTACTGTGACTTCAGCCAGCGCCGAATCCACCTCTGAGCCCGCCACCACCTCGGCTGCTGAGACCAGT
GCGACTGAGACAAGTACGCCCAGTGCGACCAGTGAGACCAGCGCGACCAGTGCACCCAGTACGACCAGCTCAGCC
AGTGCGACCAGCGAGACTAGTGAGACCAGCTCAGCCATTGCGACCAGTGAGACCAGCTCGTCTAGCGCCGAGCCA
ACAACCAGCGCTCAGCCAACCAGTACCACGGCTAGCTCCACCAGTGAGACCACTGAGACCAGCGCCAGCTCTACT
ACCTCAACCTCCACCACTGCTCAGCCGACCACTGCCACTACGGCGTCCTCGACTACCACTACCGAGTCCACTCAG
TCGACTACCAGTATCCCTTCGACTTTGTCCACTGCCACGAGCACCTCGTCCTCGTCCTCGTCCAGCTCATCCTCA
TCCACCTCGTCCACCACCAATCAGTCAACTACCTCTGCGCAAACCACCGAGCAGACCAGCCTGAGCACGTCCACC
TTCAAGAGCACAAGCACCTTGCCCGATGGCAGCCTGAGCACCATCACCTCTATCACAGTCATCACCCCGACGGCC
GCCCACAAGACCTCGACTACCACCGTCGGCAAGCCCGGTCTGCAAACCAATGCCGCCGCGATGGCTACCGGCATG
GCTCGTGAGGTCGTCGCCATGGTTGGTGGCGCCGTCGTGGTCGCAATGGCCCTCTAA
Transcript >Pro_DTO377G3_2|g1038.t1
ATGCTGCGTATCAGCTTGCTTCAATTGCTCTTTGTGACGCTGCTCGCTCTGTCTGCAGTCTTCGCAGCAGAGTTA
GTGCAGGGGACCTCGCAACGTGAGTCTCTCCAGGATGCCGACATCAAGGCAGCCTCGCTCCATGATGCCTTGCAT
GCTCTCTCCGCCAAATTCCGTCATGGAATCTTCCAGACTGACCTTCATGCCGCCGAAGCTCTGCAAGGTGAGGAA
CCCGTCATTGCCAGCCTGATGAGACTGGCCAAGCGCCAGGACAATGCTACTGCTAGCTCGGAGGCAACCACGCTG
CCGGCGTCTACTGTGACTTCAGCCAGCGCCGAATCCACCTCTGAGCCCGCCACCACCTCGGCTGCTGAGACCAGT
GCGACTGAGACAAGTACGCCCAGTGCGACCAGTGAGACCAGCGCGACCAGTGCACCCAGTACGACCAGCTCAGCC
AGTGCGACCAGCGAGACTAGTGAGACCAGCTCAGCCATTGCGACCAGTGAGACCAGCTCGTCTAGCGCCGAGCCA
ACAACCAGCGCTCAGCCAACCAGTACCACGGCTAGCTCCACCAGTGAGACCACTGAGACCAGCGCCAGCTCTACT
ACCTCAACCTCCACCACTGCTCAGCCGACCACTGCCACTACGGCGTCCTCGACTACCACTACCGAGTCCACTCAG
TCGACTACCAGTATCCCTTCGACTTTGTCCACTGCCACGAGCACCTCGTCCTCGTCCTCGTCCAGCTCATCCTCA
TCCACCTCGTCCACCACCAATCAGTCAACTACCTCTGCGCAAACCACCGAGCAGACCAGCCTGAGCACGTCCACC
TTCAAGAGCACAAGCACCTTGCCCGATGGCAGCCTGAGCACCATCACCTCTATCACAGTCATCACCCCGACGGCC
GCCCACAAGACCTCGACTACCACCGTCGGCAAGCCCGGTCTGCAAACCAATGCCGCCGCGATGGCTACCGGCATG
GCTCGTGAGGTCGTCGCCATGGTTGGTGGCGCCGTCGTGGTCGCAATGGCCCTCTAA
Gene >Pro_DTO377G3_2|g1038.t1
ATGCTGCGTATCAGCTTGCTTCAATTGCTCTTTGTGACGCTGCTCGCTCTGTCTGCAGTCTTCGCAGCAGAGTTA
GTGCAGGGGACCTCGCAACGTGAGTCTCTCCAGGATGCCGACATCAAGGCAGCCTCGCTCCATGATGCCTTGCAT
GCTCTCTCCGCCAAATTCCGTCATGGAATCTTCCAGACTGACCTTCATGCCGCCGAAGCTCTGCAAGGTGAGGAA
CCCGTCATTGCCAGCCTGATGAGACTGGCCAAGCGCCAGGACAATGCTACTGCTAGCTCGGAGGCAACCACGCTG
CCGGCGTCTACTGTGACTTCAGCCAGCGCCGAATCCACCTCTGAGCCCGCCACCACCTCGGCTGCTGAGACCAGT
GCGACTGAGACAAGTACGCCCAGTGCGACCAGTGAGACCAGCGCGACCAGTGCACCCAGTACGACCAGCTCAGCC
AGTGCGACCAGCGAGACTAGTGAGACCAGCTCAGCCATTGCGACCAGTGAGACCAGCTCGTCTAGCGCCGAGCCA
ACAACCAGCGCTCAGCCAACCAGTACCACGGCTAGCTCCACCAGTGAGACCACTGAGACCAGCGCCAGCTCTACT
AGTGAGACCAGCTCCACCAGCTCTGCATCGGTCTCCACTGAAACCTCTACCACAGCCTCAACCTCCACCACTGCT
CAGCCGACCACTGCCACTACGGCGTCCTCGACTACCACTACCGAGTCCACTCAGTCGACTACCAGTATCCCTTCG
ACTTTGTCCACTGCCACGAGCACCTCGTCCTCGTCCTCGTCCAGCTCATCCTCATCCACCTCGTCCACCACCAAT
CAGTCAACTACCTCTGCGCAAACCACCGAGCAGACCAGCCTGAGCACGTCCACCTTCAAGAGCACAAGCACCTTG
CCCGATGGCAGCCTGAGCACCATCACCTCTATCACAGTCATCACCCCGACGGCCGCCCACAAGACCTCGACTACC
ACCGTCGGCAAGCCCGGTCTGCAAACCAATGCCGCCGCGATGGCTACCGGCATGGCTCGTGAGGTCGTCGCCATG
GTTGGTGGCGCCGTCGTGGTCGCAATGGCCCTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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