© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1038.t1 |
| Gene name | |
| Location | scaffold_01:2765849..2766935 |
| Strand | - |
| Gene length (bp) | 1086 |
| Transcript length (bp) | 1032 |
| Coding sequence length (bp) | 1032 |
| Protein length (aa) | 344 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 22 | 0.999602 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 7.98 | 2.57 | 13.40 |
| 5d_25C | Five days - 25 degrees Celsius | 5.46 | 1.42 | 9.50 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.15 | 2.19 | 12.10 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.28 | 0.63 | 7.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 5.37 | 1.33 | 9.41 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.35 | 8.56 | 32.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.392165 | no |
| 3d_25C | 7d_25C | 0.842906 | no |
| 3d_25C | 7d_15C | 0.357048 | no |
| 3d_25C | 7d_30C | 0.006000 | yes |
| 3d_25C | 10d_25C | 0.171107 | no |
| 5d_25C | 7d_25C | 0.571577 | no |
| 5d_25C | 7d_15C | 0.980207 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.671231 | no |
| 7d_25C | 7d_15C | 0.538403 | no |
| 7d_25C | 7d_30C | 0.001278 | yes |
| 7d_25C | 10d_25C | 0.268759 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.693220 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 3437 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1038.t1 MLRISLLQLLFVTLLALSAVFAAELVQGTSQRESLQDADIKAASLHDALHALSAKFRHGIFQTDLHAAEALQGEE PVIASLMRLAKRQDNATASSEATTLPASTVTSASAESTSEPATTSAAETSATETSTPSATSETSATSAPSTTSSA SATSETSETSSAIATSETSSSSAEPTTSAQPTSTTASSTSETTETSASSTTSTSTTAQPTTATTASSTTTTESTQ STTSIPSTLSTATSTSSSSSSSSSSSTSSTTNQSTTSAQTTEQTSLSTSTFKSTSTLPDGSLSTITSITVITPTA AHKTSTTTVGKPGLQTNAAAMATGMAREVVAMVGGAVVVAMAL* |
| Coding | >Pro_DTO377G3_2|g1038.t1 ATGCTGCGTATCAGCTTGCTTCAATTGCTCTTTGTGACGCTGCTCGCTCTGTCTGCAGTCTTCGCAGCAGAGTTA GTGCAGGGGACCTCGCAACGTGAGTCTCTCCAGGATGCCGACATCAAGGCAGCCTCGCTCCATGATGCCTTGCAT GCTCTCTCCGCCAAATTCCGTCATGGAATCTTCCAGACTGACCTTCATGCCGCCGAAGCTCTGCAAGGTGAGGAA CCCGTCATTGCCAGCCTGATGAGACTGGCCAAGCGCCAGGACAATGCTACTGCTAGCTCGGAGGCAACCACGCTG CCGGCGTCTACTGTGACTTCAGCCAGCGCCGAATCCACCTCTGAGCCCGCCACCACCTCGGCTGCTGAGACCAGT GCGACTGAGACAAGTACGCCCAGTGCGACCAGTGAGACCAGCGCGACCAGTGCACCCAGTACGACCAGCTCAGCC AGTGCGACCAGCGAGACTAGTGAGACCAGCTCAGCCATTGCGACCAGTGAGACCAGCTCGTCTAGCGCCGAGCCA ACAACCAGCGCTCAGCCAACCAGTACCACGGCTAGCTCCACCAGTGAGACCACTGAGACCAGCGCCAGCTCTACT ACCTCAACCTCCACCACTGCTCAGCCGACCACTGCCACTACGGCGTCCTCGACTACCACTACCGAGTCCACTCAG TCGACTACCAGTATCCCTTCGACTTTGTCCACTGCCACGAGCACCTCGTCCTCGTCCTCGTCCAGCTCATCCTCA TCCACCTCGTCCACCACCAATCAGTCAACTACCTCTGCGCAAACCACCGAGCAGACCAGCCTGAGCACGTCCACC TTCAAGAGCACAAGCACCTTGCCCGATGGCAGCCTGAGCACCATCACCTCTATCACAGTCATCACCCCGACGGCC GCCCACAAGACCTCGACTACCACCGTCGGCAAGCCCGGTCTGCAAACCAATGCCGCCGCGATGGCTACCGGCATG GCTCGTGAGGTCGTCGCCATGGTTGGTGGCGCCGTCGTGGTCGCAATGGCCCTCTAA |
| Transcript | >Pro_DTO377G3_2|g1038.t1 ATGCTGCGTATCAGCTTGCTTCAATTGCTCTTTGTGACGCTGCTCGCTCTGTCTGCAGTCTTCGCAGCAGAGTTA GTGCAGGGGACCTCGCAACGTGAGTCTCTCCAGGATGCCGACATCAAGGCAGCCTCGCTCCATGATGCCTTGCAT GCTCTCTCCGCCAAATTCCGTCATGGAATCTTCCAGACTGACCTTCATGCCGCCGAAGCTCTGCAAGGTGAGGAA CCCGTCATTGCCAGCCTGATGAGACTGGCCAAGCGCCAGGACAATGCTACTGCTAGCTCGGAGGCAACCACGCTG CCGGCGTCTACTGTGACTTCAGCCAGCGCCGAATCCACCTCTGAGCCCGCCACCACCTCGGCTGCTGAGACCAGT GCGACTGAGACAAGTACGCCCAGTGCGACCAGTGAGACCAGCGCGACCAGTGCACCCAGTACGACCAGCTCAGCC AGTGCGACCAGCGAGACTAGTGAGACCAGCTCAGCCATTGCGACCAGTGAGACCAGCTCGTCTAGCGCCGAGCCA ACAACCAGCGCTCAGCCAACCAGTACCACGGCTAGCTCCACCAGTGAGACCACTGAGACCAGCGCCAGCTCTACT ACCTCAACCTCCACCACTGCTCAGCCGACCACTGCCACTACGGCGTCCTCGACTACCACTACCGAGTCCACTCAG TCGACTACCAGTATCCCTTCGACTTTGTCCACTGCCACGAGCACCTCGTCCTCGTCCTCGTCCAGCTCATCCTCA TCCACCTCGTCCACCACCAATCAGTCAACTACCTCTGCGCAAACCACCGAGCAGACCAGCCTGAGCACGTCCACC TTCAAGAGCACAAGCACCTTGCCCGATGGCAGCCTGAGCACCATCACCTCTATCACAGTCATCACCCCGACGGCC GCCCACAAGACCTCGACTACCACCGTCGGCAAGCCCGGTCTGCAAACCAATGCCGCCGCGATGGCTACCGGCATG GCTCGTGAGGTCGTCGCCATGGTTGGTGGCGCCGTCGTGGTCGCAATGGCCCTCTAA |
| Gene | >Pro_DTO377G3_2|g1038.t1 ATGCTGCGTATCAGCTTGCTTCAATTGCTCTTTGTGACGCTGCTCGCTCTGTCTGCAGTCTTCGCAGCAGAGTTA GTGCAGGGGACCTCGCAACGTGAGTCTCTCCAGGATGCCGACATCAAGGCAGCCTCGCTCCATGATGCCTTGCAT GCTCTCTCCGCCAAATTCCGTCATGGAATCTTCCAGACTGACCTTCATGCCGCCGAAGCTCTGCAAGGTGAGGAA CCCGTCATTGCCAGCCTGATGAGACTGGCCAAGCGCCAGGACAATGCTACTGCTAGCTCGGAGGCAACCACGCTG CCGGCGTCTACTGTGACTTCAGCCAGCGCCGAATCCACCTCTGAGCCCGCCACCACCTCGGCTGCTGAGACCAGT GCGACTGAGACAAGTACGCCCAGTGCGACCAGTGAGACCAGCGCGACCAGTGCACCCAGTACGACCAGCTCAGCC AGTGCGACCAGCGAGACTAGTGAGACCAGCTCAGCCATTGCGACCAGTGAGACCAGCTCGTCTAGCGCCGAGCCA ACAACCAGCGCTCAGCCAACCAGTACCACGGCTAGCTCCACCAGTGAGACCACTGAGACCAGCGCCAGCTCTACT AGTGAGACCAGCTCCACCAGCTCTGCATCGGTCTCCACTGAAACCTCTACCACAGCCTCAACCTCCACCACTGCT CAGCCGACCACTGCCACTACGGCGTCCTCGACTACCACTACCGAGTCCACTCAGTCGACTACCAGTATCCCTTCG ACTTTGTCCACTGCCACGAGCACCTCGTCCTCGTCCTCGTCCAGCTCATCCTCATCCACCTCGTCCACCACCAAT CAGTCAACTACCTCTGCGCAAACCACCGAGCAGACCAGCCTGAGCACGTCCACCTTCAAGAGCACAAGCACCTTG CCCGATGGCAGCCTGAGCACCATCACCTCTATCACAGTCATCACCCCGACGGCCGCCCACAAGACCTCGACTACC ACCGTCGGCAAGCCCGGTCTGCAAACCAATGCCGCCGCGATGGCTACCGGCATGGCTCGTGAGGTCGTCGCCATG GTTGGTGGCGCCGTCGTGGTCGCAATGGCCCTCTAA |