© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1026.t1 |
| Gene name | |
| Location | scaffold_01:2736728..2737861 |
| Strand | - |
| Gene length (bp) | 1133 |
| Transcript length (bp) | 1083 |
| Coding sequence length (bp) | 1083 |
| Protein length (aa) | 361 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.01 | 0.24 | 3.78 |
| 5d_25C | Five days - 25 degrees Celsius | 0.69 | 0.00 | 1.48 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.38 | 0.00 | 2.85 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.17 | 0.00 | 0.51 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.22 | 0.00 | 2.44 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.48 | 0.42 | 4.55 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.084097 | no |
| 3d_25C | 7d_25C | 0.576776 | no |
| 3d_25C | 7d_15C | 0.403859 | no |
| 3d_25C | 7d_30C | 0.741518 | no |
| 3d_25C | 10d_25C | 0.044784 | yes |
| 5d_25C | 7d_25C | 0.341306 | no |
| 5d_25C | 7d_15C | 0.424160 | no |
| 5d_25C | 7d_30C | 0.040199 | yes |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.895169 | no |
| 7d_25C | 7d_30C | 0.339398 | no |
| 7d_25C | 10d_25C | 0.060029 | no |
| 7d_15C | 7d_30C | 0.201950 | no |
| 7d_15C | 10d_25C | 0.069111 | no |
| 7d_30C | 10d_25C | 0.036077 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1026.t1 MAFKLFLLLSLAASRIVLAEKVGYFDDSSVCADPKGLKTCYEDADTSYASCINNNCAGGDPACYKACNGDSSCMA SQCPNLGIDCINVCECIKNANEIDCMAESCWNQVYSCEYQKTGENLVNFCPKVDLEQIPFWPFPGNATGGCSCNF AKIDLKATQINNHLTTCGNDEKALEQLTADELSDYGRACICCSYSAIVSTIWDECPNTDPAVLGADYWLGQLKDG EDGEACSTYMEKFPCKKLGFGDEVAGGTDTFYTPDNLPKNGTEKLYNTGGVVSSPVSGATFTWTLGTIARAITVS STDNVVTATATTTTGSDSSGSSQSAATETGASATSTGLAAGCEIPALAIVGPVLAIVYGL* |
| Coding | >Pro_DTO377G3_2|g1026.t1 ATGGCATTTAAATTGTTTCTTTTGCTGTCTTTGGCGGCCTCCAGAATTGTGCTAGCCGAGAAAGTCGGGTATTTT GACGATTCGTCGGTCTGCGCTGATCCAAAGGGTCTAAAGACATGCTACGAAGACGCGGATACCAGCTACGCCAGC TGCATCAATAACAACTGCGCTGGCGGAGACCCTGCATGCTACAAAGCATGCAATGGCGATAGTTCATGCATGGCT TCTCAATGCCCAAACCTAGGTATTGACTGTATCAATGTTTGCGAATGCATCAAGAATGCCAATGAGATCGATTGC ATGGCTGAGAGCTGCTGGAACCAGGTCTATTCCTGCGAATATCAAAAAACCGGCGAAAACTTAGTCAACTTCTGC CCGAAAGTCGACCTTGAACAAATCCCCTTCTGGCCCTTTCCCGGAAACGCGACGGGCGGCTGTTCCTGCAATTTC GCGAAAATCGACCTCAAAGCCACCCAGATAAACAACCACTTGACGACGTGCGGGAATGACGAGAAGGCATTGGAG CAGCTTACAGCCGACGAATTGTCCGACTATGGCCGGGCCTGCATTTGCTGTTCCTACAGCGCGATTGTATCCACC ATCTGGGACGAATGCCCTAATACAGATCCGGCTGTTCTGGGAGCAGACTACTGGCTTGGACAGTTGAAGGATGGA GAAGATGGGGAAGCATGTAGTACTTACATGGAAAAATTCCCTTGTAAGAAACTTGGTTTTGGAGATGAGGTTGCG GGCGGTACGGATACTTTCTACACGCCGGACAATCTTCCTAAAAATGGGACGGAGAAGTTGTACAATACCGGTGGT GTTGTCTCGTCTCCTGTTAGTGGGGCTACTTTTACTTGGACTCTGGGTACTATCGCGCGTGCAATTACGGTGTCG TCAACGGATAATGTTGTGACAGCTACAGCTACAACTACGACCGGGTCAGATAGCTCTGGAAGTTCTCAAAGCGCT GCTACAGAGACAGGAGCGAGTGCGACTTCGACTGGCTTAGCTGCTGGCTGTGAAATACCTGCGTTGGCGATTGTT GGGCCTGTGCTTGCTATTGTCTACGGTCTGTAA |
| Transcript | >Pro_DTO377G3_2|g1026.t1 ATGGCATTTAAATTGTTTCTTTTGCTGTCTTTGGCGGCCTCCAGAATTGTGCTAGCCGAGAAAGTCGGGTATTTT GACGATTCGTCGGTCTGCGCTGATCCAAAGGGTCTAAAGACATGCTACGAAGACGCGGATACCAGCTACGCCAGC TGCATCAATAACAACTGCGCTGGCGGAGACCCTGCATGCTACAAAGCATGCAATGGCGATAGTTCATGCATGGCT TCTCAATGCCCAAACCTAGGTATTGACTGTATCAATGTTTGCGAATGCATCAAGAATGCCAATGAGATCGATTGC ATGGCTGAGAGCTGCTGGAACCAGGTCTATTCCTGCGAATATCAAAAAACCGGCGAAAACTTAGTCAACTTCTGC CCGAAAGTCGACCTTGAACAAATCCCCTTCTGGCCCTTTCCCGGAAACGCGACGGGCGGCTGTTCCTGCAATTTC GCGAAAATCGACCTCAAAGCCACCCAGATAAACAACCACTTGACGACGTGCGGGAATGACGAGAAGGCATTGGAG CAGCTTACAGCCGACGAATTGTCCGACTATGGCCGGGCCTGCATTTGCTGTTCCTACAGCGCGATTGTATCCACC ATCTGGGACGAATGCCCTAATACAGATCCGGCTGTTCTGGGAGCAGACTACTGGCTTGGACAGTTGAAGGATGGA GAAGATGGGGAAGCATGTAGTACTTACATGGAAAAATTCCCTTGTAAGAAACTTGGTTTTGGAGATGAGGTTGCG GGCGGTACGGATACTTTCTACACGCCGGACAATCTTCCTAAAAATGGGACGGAGAAGTTGTACAATACCGGTGGT GTTGTCTCGTCTCCTGTTAGTGGGGCTACTTTTACTTGGACTCTGGGTACTATCGCGCGTGCAATTACGGTGTCG TCAACGGATAATGTTGTGACAGCTACAGCTACAACTACGACCGGGTCAGATAGCTCTGGAAGTTCTCAAAGCGCT GCTACAGAGACAGGAGCGAGTGCGACTTCGACTGGCTTAGCTGCTGGCTGTGAAATACCTGCGTTGGCGATTGTT GGGCCTGTGCTTGCTATTGTCTACGGTCTGTAA |
| Gene | >Pro_DTO377G3_2|g1026.t1 ATGGCATTTAAATTGTTTCTTTTGCTGTCTTTGGCGGCCTCCAGAATTGTGCTAGCCGAGAAAGTCGGGTATTTT GACGATTCGTCGGTCTGCGCTGATCCAAAGGGTCTAAAGACATGCTACGAAGACGCGGATACCAGCTACGCCAGC TGCATCAATAACAACTGCGCTGGCGGAGACCCTGCATGCTACAAAGCATGCAATGGCGATAGTTCATGCATGGCT TCTCAATGCCCAAACCTAGGTATTGACTGTATCAATGTTTGCGAATGCATCAAGAATGCCAATGAGATCGATTGC ATGGCTGAGAGCTGCTGGAACCAGGTAATTCTTACAAACTAGAATACCCTGCCATAAATTGACACTCCAGCTAGG TCTATTCCTGCGAATATCAAAAAACCGGCGAAAACTTAGTCAACTTCTGCCCGAAAGTCGACCTTGAACAAATCC CCTTCTGGCCCTTTCCCGGAAACGCGACGGGCGGCTGTTCCTGCAATTTCGCGAAAATCGACCTCAAAGCCACCC AGATAAACAACCACTTGACGACGTGCGGGAATGACGAGAAGGCATTGGAGCAGCTTACAGCCGACGAATTGTCCG ACTATGGCCGGGCCTGCATTTGCTGTTCCTACAGCGCGATTGTATCCACCATCTGGGACGAATGCCCTAATACAG ATCCGGCTGTTCTGGGAGCAGACTACTGGCTTGGACAGTTGAAGGATGGAGAAGATGGGGAAGCATGTAGTACTT ACATGGAAAAATTCCCTTGTAAGAAACTTGGTTTTGGAGATGAGGTTGCGGGCGGTACGGATACTTTCTACACGC CGGACAATCTTCCTAAAAATGGGACGGAGAAGTTGTACAATACCGGTGGTGTTGTCTCGTCTCCTGTTAGTGGGG CTACTTTTACTTGGACTCTGGGTACTATCGCGCGTGCAATTACGGTGTCGTCAACGGATAATGTTGTGACAGCTA CAGCTACAACTACGACCGGGTCAGATAGCTCTGGAAGTTCTCAAAGCGCTGCTACAGAGACAGGAGCGAGTGCGA CTTCGACTGGCTTAGCTGCTGGCTGTGAAATACCTGCGTTGGCGATTGTTGGGCCTGTGCTTGCTATTGTCTACG GTCTGTAA |