© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g1021.t1 |
| Gene name | |
| Location | scaffold_01:2709043..2711036 |
| Strand | - |
| Gene length (bp) | 1993 |
| Transcript length (bp) | 1803 |
| Coding sequence length (bp) | 1803 |
| Protein length (aa) | 601 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02776 | TPP_enzyme_N | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 1.5E-33 | 25 | 194 |
| PF02775 | TPP_enzyme_C | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 2.7E-19 | 427 | 520 |
| PF00205 | TPP_enzyme_M | Thiamine pyrophosphate enzyme, central domain | 2.8E-18 | 229 | 333 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000287 | magnesium ion binding | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0030976 | thiamine pyrophosphate binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:1901681 | sulfur compound binding | No |
| GO:0050997 | quaternary ammonium group binding | No |
| GO:0019842 | vitamin binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 89 | 111 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 12.30 | 5.81 | 18.78 |
| 5d_25C | Five days - 25 degrees Celsius | 10.10 | 4.57 | 15.63 |
| 7d_25C | Seven days - 25 degrees Celsius | 8.81 | 3.78 | 13.85 |
| 10d_25C | Ten days - 25 degrees Celsius | 6.68 | 2.68 | 10.67 |
| 7d_15C | Seven days - 15 degrees Celsius | 25.18 | 14.16 | 36.21 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.88 | 5.55 | 18.21 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.598633 | no |
| 3d_25C | 7d_25C | 0.325988 | no |
| 3d_25C | 7d_15C | 0.004450 | yes |
| 3d_25C | 7d_30C | 0.940770 | no |
| 3d_25C | 10d_25C | 0.050137 | no |
| 5d_25C | 7d_25C | 0.757041 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.682629 | no |
| 5d_25C | 10d_25C | 0.222005 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.388385 | no |
| 7d_25C | 10d_25C | 0.470726 | no |
| 7d_15C | 7d_30C | 0.005235 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.066129 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1021.t1 MTELFDRPSLMPPLITPSFSPKDHNIGTLLAHRMEELGVKDFFAVPGDSNLTLLDQLLKNPSLHLIGCCNELNAG YAADRYARSSPTKVAVVIVTFTVGSLSLLNTIAGAYSERLKIIIISGCPSSKLLTEGSLLHHTTGRASKDQALRV FQEFTATSIRLDSSEYAALRLDEALSQCIHKSLPVYIEIPTDIVGVVGNAATPLQISPPTLIQSEAVDEIISPLI ATWNAAHRPILIIGALARFFLSTEALIAFAEKLGCAVFCQPDAKSTLPESHPQFVGTFWAIASKPECRDIVMDAD LWVVVGGRWSDLHTVGGLNIKEERRRMINIQETSIRMPYGRLFQDLCLANVLGAFLRSSILPKRETLLSSQWKSR EQTRVNSPVLGEALTVRGIVDVIQQLITSKDTLIADTGDAWFNAADISLPMGANFQIQLVYASLGWSLPAALGCQ LARPDGRTILMIGDGAFQMTAQELSTAIRSRANMIVFIFNNLGYQIESAIHDGPYNYIANWNYAKFASAMCTPKH TRTCNDPFASQLDKDRGLNPAFFSMQIKTQADLLSALDRINLEPWKLALLECCIQPGDVSVGLRQLAGALSETVQ * |
| Coding | >Pro_DTO377G3_2|g1021.t1 ATGACTGAGCTATTTGACCGACCGAGCTTGATGCCACCATTGATCACCCCGAGCTTTTCACCCAAAGACCATAAT ATCGGCACCCTCTTGGCCCATAGAATGGAAGAGCTGGGAGTTAAGGACTTCTTTGCCGTCCCAGGTGACTCAAAT CTGACCCTGCTTGATCAGCTTTTGAAAAACCCAAGCCTACACCTTATTGGGTGCTGTAATGAGTTGAATGCTGGC TACGCTGCAGATAGGTACGCGCGAAGTTCCCCTACCAAAGTTGCGGTTGTGATAGTCACCTTCACGGTTGGGAGC CTATCACTGCTTAATACAATTGCAGGAGCCTATTCTGAGCGACTTAAGATCATAATTATCTCAGGCTGTCCAAGC TCAAAATTGCTGACAGAGGGGAGTCTCCTCCATCATACGACAGGTAGAGCGAGCAAGGACCAAGCACTGCGTGTA TTCCAAGAGTTCACGGCTACCTCAATCCGTCTGGATTCCAGTGAATATGCTGCACTCCGCCTAGATGAAGCTCTC TCTCAGTGCATTCATAAATCACTGCCAGTCTACATTGAGATTCCCACCGATATAGTGGGGGTTGTGGGCAATGCA GCAACTCCTTTGCAGATTTCACCGCCAACATTAATTCAATCAGAGGCCGTCGATGAAATTATATCCCCACTGATT GCCACCTGGAATGCAGCGCACCGGCCGATTTTGATCATTGGTGCTCTGGCACGCTTCTTCCTCTCGACAGAAGCT CTGATAGCATTTGCTGAAAAGCTGGGTTGCGCCGTCTTCTGCCAGCCGGATGCCAAATCAACGCTACCAGAGTCA CACCCTCAGTTTGTGGGCACATTTTGGGCCATTGCTTCCAAGCCCGAATGTAGAGATATTGTGATGGACGCTGAC CTCTGGGTGGTAGTTGGAGGCCGTTGGTCTGATTTGCACACGGTGGGAGGTCTCAATATCAAAGAGGAGCGCCGA CGTATGATTAATATCCAGGAAACATCTATACGAATGCCGTATGGTCGATTGTTTCAAGATTTATGCCTAGCCAAT GTTCTTGGCGCTTTTCTGCGGTCCTCAATTCTCCCCAAAAGAGAAACACTTCTTTCATCCCAATGGAAGTCGCGT GAACAGACCAGAGTCAACAGTCCTGTACTTGGCGAAGCTCTCACAGTGCGTGGGATCGTGGATGTTATCCAACAG CTAATTACAAGCAAAGACACCTTGATAGCTGATACGGGGGATGCTTGGTTCAATGCCGCCGATATTTCGCTCCCC ATGGGGGCGAACTTTCAAATTCAGCTAGTTTATGCGTCTCTGGGATGGAGCCTACCTGCTGCGCTTGGCTGCCAA CTAGCTCGCCCCGATGGGCGAACAATCCTCATGATTGGTGATGGCGCTTTTCAAATGACTGCTCAAGAGCTAAGT ACTGCCATCCGAAGTAGAGCCAACATGATAGTCTTCATCTTCAACAATCTGGGTTATCAGATCGAGTCTGCAATT CATGATGGACCGTATAATTACATCGCCAATTGGAACTATGCCAAATTCGCTTCCGCCATGTGTACACCCAAGCAT ACAAGAACATGCAACGACCCGTTCGCATCTCAATTGGACAAAGACCGGGGTCTTAATCCGGCATTTTTCTCGATG CAAATCAAAACACAAGCCGATCTGCTATCAGCCTTAGATCGGATCAATTTGGAGCCATGGAAACTAGCCCTCTTG GAGTGCTGCATTCAGCCCGGCGATGTCAGTGTTGGTCTACGGCAGCTTGCAGGTGCACTCTCTGAAACAGTCCAG TGA |
| Transcript | >Pro_DTO377G3_2|g1021.t1 ATGACTGAGCTATTTGACCGACCGAGCTTGATGCCACCATTGATCACCCCGAGCTTTTCACCCAAAGACCATAAT ATCGGCACCCTCTTGGCCCATAGAATGGAAGAGCTGGGAGTTAAGGACTTCTTTGCCGTCCCAGGTGACTCAAAT CTGACCCTGCTTGATCAGCTTTTGAAAAACCCAAGCCTACACCTTATTGGGTGCTGTAATGAGTTGAATGCTGGC TACGCTGCAGATAGGTACGCGCGAAGTTCCCCTACCAAAGTTGCGGTTGTGATAGTCACCTTCACGGTTGGGAGC CTATCACTGCTTAATACAATTGCAGGAGCCTATTCTGAGCGACTTAAGATCATAATTATCTCAGGCTGTCCAAGC TCAAAATTGCTGACAGAGGGGAGTCTCCTCCATCATACGACAGGTAGAGCGAGCAAGGACCAAGCACTGCGTGTA TTCCAAGAGTTCACGGCTACCTCAATCCGTCTGGATTCCAGTGAATATGCTGCACTCCGCCTAGATGAAGCTCTC TCTCAGTGCATTCATAAATCACTGCCAGTCTACATTGAGATTCCCACCGATATAGTGGGGGTTGTGGGCAATGCA GCAACTCCTTTGCAGATTTCACCGCCAACATTAATTCAATCAGAGGCCGTCGATGAAATTATATCCCCACTGATT GCCACCTGGAATGCAGCGCACCGGCCGATTTTGATCATTGGTGCTCTGGCACGCTTCTTCCTCTCGACAGAAGCT CTGATAGCATTTGCTGAAAAGCTGGGTTGCGCCGTCTTCTGCCAGCCGGATGCCAAATCAACGCTACCAGAGTCA CACCCTCAGTTTGTGGGCACATTTTGGGCCATTGCTTCCAAGCCCGAATGTAGAGATATTGTGATGGACGCTGAC CTCTGGGTGGTAGTTGGAGGCCGTTGGTCTGATTTGCACACGGTGGGAGGTCTCAATATCAAAGAGGAGCGCCGA CGTATGATTAATATCCAGGAAACATCTATACGAATGCCGTATGGTCGATTGTTTCAAGATTTATGCCTAGCCAAT GTTCTTGGCGCTTTTCTGCGGTCCTCAATTCTCCCCAAAAGAGAAACACTTCTTTCATCCCAATGGAAGTCGCGT GAACAGACCAGAGTCAACAGTCCTGTACTTGGCGAAGCTCTCACAGTGCGTGGGATCGTGGATGTTATCCAACAG CTAATTACAAGCAAAGACACCTTGATAGCTGATACGGGGGATGCTTGGTTCAATGCCGCCGATATTTCGCTCCCC ATGGGGGCGAACTTTCAAATTCAGCTAGTTTATGCGTCTCTGGGATGGAGCCTACCTGCTGCGCTTGGCTGCCAA CTAGCTCGCCCCGATGGGCGAACAATCCTCATGATTGGTGATGGCGCTTTTCAAATGACTGCTCAAGAGCTAAGT ACTGCCATCCGAAGTAGAGCCAACATGATAGTCTTCATCTTCAACAATCTGGGTTATCAGATCGAGTCTGCAATT CATGATGGACCGTATAATTACATCGCCAATTGGAACTATGCCAAATTCGCTTCCGCCATGTGTACACCCAAGCAT ACAAGAACATGCAACGACCCGTTCGCATCTCAATTGGACAAAGACCGGGGTCTTAATCCGGCATTTTTCTCGATG CAAATCAAAACACAAGCCGATCTGCTATCAGCCTTAGATCGGATCAATTTGGAGCCATGGAAACTAGCCCTCTTG GAGTGCTGCATTCAGCCCGGCGATGTCAGTGTTGGTCTACGGCAGCTTGCAGGTGCACTCTCTGAAACAGTCCAG TGA |
| Gene | >Pro_DTO377G3_2|g1021.t1 ATGACTGAGCTATTTGACCGACCGAGCTTGATGCCACCATTGATCACCCCGAGCTTTTCACCCAAAGACCATAAT ATCGGCACCCTCTTGGCCCATAGAATGGAAGAGCTGGGAGTTAAGGACTTCTTTGCCGTCCCAGGTACTTGCGCC AAGATTCCATATGTTTCACACCATTCAAGCTTACTAACTACTATCATTGAAAGGTGACTCAAATCTGACCCTGCT TGATCAGCTTTTGAAAAACCCAAGCCTACACCTTATTGGGTGCTGTAATGAGTTGAATGCTGGCTACGCTGCAGA TAGGTACGCGCGAAGTTCCCCTACCAAAGTTGCGGTTGTGATAGTCACCTTCACGGTTGGGAGCCTATCACTGCT TAATACAATTGCAGGAGCCTATTCTGAGCGACTTAAGATCATAATTATCTCAGGCTGTCCAAGCTCAAAATTGCT GACAGAGGGGAGTCTCCTCCATCATACGACAGGTAGAGCGAGCAAGGACCAAGCACTGCGTGTATTCCAAGAGTT CACGGCTACCTCAATCCGTCTGGATTCCAGTGAATATGCTGCACTCCGCCTAGATGAAGCTCTCTCTCAGTGCAT TCATAAATCACTGCCAGTCTACATTGAGATTCCCACCGATATAGTGGGGGTTGTGGGCAATGCAGCAACTCCTTT GCAGATTTCACCGCCAACATTAATTCAATCAGAGGCCGTCGATGAAATTATATCCCCACTGATTGCCACCTGGAA TGCAGCGCACCGGCCGATTTTGATCATTGGTGCTCTGGCACGCTTCTTCCTCTCGACAGAAGCTCTGATAGCATT TGCTGAAAAGCTGGGTTGCGCCGTCTTCTGCCAGCCGGATGCCAAATCAACGCTACCAGAGTCACACCCTCAGTT TGTGGGCACATTTTGGGCCATTGCTTCCAAGCCCGAATGTAGAGATATTGTGATGGACGCTGACCTCTGGGTGGT AGTTGGAGGCCGTTGGTCTGATTTGCACACGGTGGGAGGTCTCAATATCAAAGAGGAGCGCCGACGTATGATTAA TATCCAGGAAACATCTATACGAATGCCGTATGGTCGATTGTTTCAAGATTTATGCCTAGCCAATGTTCTTGGCGC TTTTCTGCGGTCCTCAATTCTCCCCAAAAGAGAAACACTTCTTTCATCCCAATGGAAGTCGCGTGAACAGACCAG AGTCAACAGTCCTGTACTTGGCGAAGCTCTCACAGTGCGTGGGATCGTGGATGTTATCCAACAGCTAATTACAAG CAAAGACACCTTGATAGCTGATACGGGGGATGCTTGGTTCAATGCCGCCGATATTTCGCTCCCCATGGGGGCGAA CTTTCAAATTCAGCTAGTTTATGCGTCTCTGGGATGGAGCCTACCTGCTGCGCTTGGCTGCCAACTAGCTCGCCC CGATGGGCGAACAATCCTCATGATTGGTGATGGCGCTTTTCAAATGACTGCTCAAGAGCTAAGTACTGCCATCCG AAGTAGAGCCAACATGATAGTCTTCATCTTCAACAATCTGGGTTATCAGATCGAGGTAAGTTCTTACTGTTCATT CTAAGGCCACATATCCTGCTTCAAGGTCCCTCTTTTTTCCTCTCCATCTTTGAATTAAGCAAGACTCCTTTGCTA ATATTTTTCCATCCTCCTTGCCATATTCTAGTCTGCAATTCATGATGGACCGTATAATTACATCGCCAATTGGAA CTATGCCAAATTCGCTTCCGCCATGTGTACACCCAAGCATACAAGAACATGCAACGACCCGTTCGCATCTCAATT GGACAAAGACCGGGGTCTTAATCCGGCATTTTTCTCGATGCAAATCAAAACACAAGCCGATCTGCTATCAGCCTT AGATCGGATCAATTTGGAGCCATGGAAACTAGCCCTCTTGGAGTGCTGCATTCAGCCCGGCGATGTCAGTGTTGG TCTACGGCAGCTTGCAGGTGCACTCTCTGAAACAGTCCAGTGA |