© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g1005.t1 |
| Gene name | |
| Location | scaffold_01:2671938..2673138 |
| Strand | - |
| Gene length (bp) | 1200 |
| Transcript length (bp) | 1200 |
| Coding sequence length (bp) | 1200 |
| Protein length (aa) | 400 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00144 | Beta-lactamase | Beta-lactamase | 1.6E-39 | 5 | 370 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.59 | 4.55 | 18.64 |
| 5d_25C | Five days - 25 degrees Celsius | 11.79 | 4.77 | 18.80 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.14 | 3.90 | 16.38 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.01 | 2.84 | 13.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 8.66 | 3.13 | 14.19 |
| 7d_30C | Seven days - 30 degrees Celsius | 15.19 | 6.64 | 23.74 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.976137 | no |
| 3d_25C | 7d_25C | 0.772795 | no |
| 3d_25C | 7d_15C | 0.474026 | no |
| 3d_25C | 7d_30C | 0.475727 | no |
| 3d_25C | 10d_25C | 0.338109 | no |
| 5d_25C | 7d_25C | 0.732676 | no |
| 5d_25C | 7d_15C | 0.429318 | no |
| 5d_25C | 7d_30C | 0.495358 | no |
| 5d_25C | 10d_25C | 0.294431 | no |
| 7d_25C | 7d_15C | 0.732868 | no |
| 7d_25C | 7d_30C | 0.236533 | no |
| 7d_25C | 10d_25C | 0.577703 | no |
| 7d_15C | 7d_30C | 0.089882 | no |
| 7d_15C | 10d_25C | 0.884001 | no |
| 7d_30C | 10d_25C | 0.044585 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g1005.t1 MEASIQSAIDAGKINGAVICATDAEGHFVYNKAIGERTLLSGQKQPQQLDDVLYLASATKLITTIAALQCVEDGL LSLDGDLSSIAPELAAKQVLTGFADDGSPQLDPPARPITLKMLLTHSSGTSYHFLNPPIAKWRAQFGNPENDDPL LVEEMFTYPLSFQPGAGWMYGPGLDWAGRVVERVTGGSLIDFMQKRIFDPLGIKYAQFYPATREDLRARLVDLNP SDPGAVGSAVLGGGGEMNLRGRGAFGGHGLFLPGSDFVKVLHSLLANDGKLLTPAVVDNMFQQHLGPEAAASHQA ALASPLGPFFRVGTDSELKVGYGLGGLLTLEDVDGWYGERTLTWGGGLTLTWFIDRKNNLCGVGAIQAALPVDGE LVAELKQTFRHDIYRKYTAWKSQQ* |
| Coding | >Pro_DTO377G3_2|g1005.t1 ATGGAAGCTAGTATCCAATCCGCCATCGACGCCGGCAAGATCAACGGCGCTGTTATCTGTGCCACTGATGCCGAA GGCCACTTTGTCTACAACAAGGCGATCGGAGAGCGCACTCTACTCTCAGGCCAGAAGCAGCCACAGCAGCTCGAC GATGTGCTGTACCTAGCCTCAGCCACGAAATTGATCACAACCATCGCTGCCCTACAGTGCGTCGAAGACGGCCTA CTAAGTCTAGACGGCGACCTGTCATCCATCGCCCCGGAGCTCGCTGCAAAGCAAGTTCTCACTGGCTTTGCCGAC GATGGAAGCCCTCAGCTCGACCCACCAGCCCGCCCTATCACCCTCAAGATGCTGCTTACGCACAGCTCCGGCACC TCCTACCACTTCCTGAACCCACCCATCGCCAAGTGGCGCGCGCAGTTTGGGAATCCCGAGAATGACGACCCTCTC CTCGTCGAGGAGATGTTCACTTACCCGCTCAGCTTCCAGCCCGGTGCCGGCTGGATGTACGGCCCCGGTCTTGAC TGGGCTGGCCGCGTGGTGGAGCGTGTCACGGGCGGCTCGCTGATAGACTTCATGCAGAAGCGTATCTTCGACCCG CTCGGTATCAAATATGCTCAGTTCTATCCCGCTACCCGTGAGGACCTGCGAGCCCGTCTCGTCGATCTCAATCCC AGTGACCCTGGGGCTGTTGGTAGTGCCGTGCTCGGCGGTGGCGGCGAGATGAACCTGCGGGGCCGTGGTGCCTTT GGCGGTCATGGACTGTTCTTACCTGGCTCGGATTTTGTTAAGGTTCTGCACTCGCTGCTGGCTAATGATGGCAAG TTGCTCACGCCTGCTGTCGTCGACAATATGTTTCAGCAACACCTTGGCCCCGAGGCGGCGGCAAGCCATCAAGCT GCGCTTGCTAGTCCTCTTGGGCCCTTTTTCCGCGTTGGAACAGATTCGGAGCTGAAGGTTGGCTATGGCCTTGGC GGTTTGCTGACGCTTGAGGATGTTGACGGCTGGTATGGCGAGCGAACGTTGACTTGGGGTGGTGGTTTGACTCTC ACTTGGTTCATTGATCGGAAGAATAATCTCTGTGGTGTCGGTGCCATCCAGGCAGCACTGCCGGTCGATGGAGAG TTGGTGGCCGAGCTAAAGCAAACCTTCCGCCATGATATTTACCGCAAATATACCGCGTGGAAGAGCCAGCAGTAG |
| Transcript | >Pro_DTO377G3_2|g1005.t1 ATGGAAGCTAGTATCCAATCCGCCATCGACGCCGGCAAGATCAACGGCGCTGTTATCTGTGCCACTGATGCCGAA GGCCACTTTGTCTACAACAAGGCGATCGGAGAGCGCACTCTACTCTCAGGCCAGAAGCAGCCACAGCAGCTCGAC GATGTGCTGTACCTAGCCTCAGCCACGAAATTGATCACAACCATCGCTGCCCTACAGTGCGTCGAAGACGGCCTA CTAAGTCTAGACGGCGACCTGTCATCCATCGCCCCGGAGCTCGCTGCAAAGCAAGTTCTCACTGGCTTTGCCGAC GATGGAAGCCCTCAGCTCGACCCACCAGCCCGCCCTATCACCCTCAAGATGCTGCTTACGCACAGCTCCGGCACC TCCTACCACTTCCTGAACCCACCCATCGCCAAGTGGCGCGCGCAGTTTGGGAATCCCGAGAATGACGACCCTCTC CTCGTCGAGGAGATGTTCACTTACCCGCTCAGCTTCCAGCCCGGTGCCGGCTGGATGTACGGCCCCGGTCTTGAC TGGGCTGGCCGCGTGGTGGAGCGTGTCACGGGCGGCTCGCTGATAGACTTCATGCAGAAGCGTATCTTCGACCCG CTCGGTATCAAATATGCTCAGTTCTATCCCGCTACCCGTGAGGACCTGCGAGCCCGTCTCGTCGATCTCAATCCC AGTGACCCTGGGGCTGTTGGTAGTGCCGTGCTCGGCGGTGGCGGCGAGATGAACCTGCGGGGCCGTGGTGCCTTT GGCGGTCATGGACTGTTCTTACCTGGCTCGGATTTTGTTAAGGTTCTGCACTCGCTGCTGGCTAATGATGGCAAG TTGCTCACGCCTGCTGTCGTCGACAATATGTTTCAGCAACACCTTGGCCCCGAGGCGGCGGCAAGCCATCAAGCT GCGCTTGCTAGTCCTCTTGGGCCCTTTTTCCGCGTTGGAACAGATTCGGAGCTGAAGGTTGGCTATGGCCTTGGC GGTTTGCTGACGCTTGAGGATGTTGACGGCTGGTATGGCGAGCGAACGTTGACTTGGGGTGGTGGTTTGACTCTC ACTTGGTTCATTGATCGGAAGAATAATCTCTGTGGTGTCGGTGCCATCCAGGCAGCACTGCCGGTCGATGGAGAG TTGGTGGCCGAGCTAAAGCAAACCTTCCGCCATGATATTTACCGCAAATATACCGCGTGGAAGAGCCAGCAGTAG |
| Gene | >Pro_DTO377G3_2|g1005.t1 ATGGAAGCTAGTATCCAATCCGCCATCGACGCCGGCAAGATCAACGGCGCTGTTATCTGTGCCACTGATGCCGAA GGCCACTTTGTCTACAACAAGGCGATCGGAGAGCGCACTCTACTCTCAGGCCAGAAGCAGCCACAGCAGCTCGAC GATGTGCTGTACCTAGCCTCAGCCACGAAATTGATCACAACCATCGCTGCCCTACAGTGCGTCGAAGACGGCCTA CTAAGTCTAGACGGCGACCTGTCATCCATCGCCCCGGAGCTCGCTGCAAAGCAAGTTCTCACTGGCTTTGCCGAC GATGGAAGCCCTCAGCTCGACCCACCAGCCCGCCCTATCACCCTCAAGATGCTGCTTACGCACAGCTCCGGCACC TCCTACCACTTCCTGAACCCACCCATCGCCAAGTGGCGCGCGCAGTTTGGGAATCCCGAGAATGACGACCCTCTC CTCGTCGAGGAGATGTTCACTTACCCGCTCAGCTTCCAGCCCGGTGCCGGCTGGATGTACGGCCCCGGTCTTGAC TGGGCTGGCCGCGTGGTGGAGCGTGTCACGGGCGGCTCGCTGATAGACTTCATGCAGAAGCGTATCTTCGACCCG CTCGGTATCAAATATGCTCAGTTCTATCCCGCTACCCGTGAGGACCTGCGAGCCCGTCTCGTCGATCTCAATCCC AGTGACCCTGGGGCTGTTGGTAGTGCCGTGCTCGGCGGTGGCGGCGAGATGAACCTGCGGGGCCGTGGTGCCTTT GGCGGTCATGGACTGTTCTTACCTGGCTCGGATTTTGTTAAGGTTCTGCACTCGCTGCTGGCTAATGATGGCAAG TTGCTCACGCCTGCTGTCGTCGACAATATGTTTCAGCAACACCTTGGCCCCGAGGCGGCGGCAAGCCATCAAGCT GCGCTTGCTAGTCCTCTTGGGCCCTTTTTCCGCGTTGGAACAGATTCGGAGCTGAAGGTTGGCTATGGCCTTGGC GGTTTGCTGACGCTTGAGGATGTTGACGGCTGGTATGGCGAGCGAACGTTGACTTGGGGTGGTGGTTTGACTCTC ACTTGGTTCATTGATCGGAAGAATAATCTCTGTGGTGTCGGTGCCATCCAGGCAGCACTGCCGGTCGATGGAGAG TTGGTGGCCGAGCTAAAGCAAACCTTCCGCCATGATATTTACCGCAAATATACCGCGTGGAAGAGCCAGCAGTAG |