Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF05496
Short nameRuvB_N
Long nameHolliday junction DNA helicase RuvB P-loop domain
Proteins with at least one of this domain12
Total domain count14
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Pro_DTO377G3_2|g2623.t1 PF04212 MIT MIT (microtubule interacting and transport) domain 2.0E-23 7 72
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.2E-05 162 236
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.8E-42 167 295
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.2E-04 167 233
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 5.0E-29 370 429
Pro_DTO377G3_2|g2868.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.1E-09 58 113
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.3E-05 170 237
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.6E-05 170 291
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-42 171 304
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.9E-05 171 263
PF17862 AAA_lid_3 AAA+ lid domain 7.0E-10 326 370
Pro_DTO377G3_2|g2929.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.4E-18 111 187
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.4E-04 245 312
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-40 246 378
PF17862 AAA_lid_3 AAA+ lid domain 3.9E-09 400 440
Pro_DTO377G3_2|g3175.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 7.2E-05 146 216
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-36 148 280
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.3E-04 148 225
PF17862 AAA_lid_3 AAA+ lid domain 1.7E-08 305 341
Pro_DTO377G3_2|g3728.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.8E-08 128 246
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.0E-12 160 267
PF16193 AAA_assoc_2 AAA C-terminal domain 8.7E-22 299 368
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 1.2E-54 369 518
Pro_DTO377G3_2|g3784.t1 PF06068 TIP49 TIP49 P-loop domain 3.1E-167 15 367
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.9E-07 38 92
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.8E-07 67 117
PF17856 TIP49_C TIP49 AAA-lid domain 1.4E-19 374 440
Pro_DTO377G3_2|g4550.t1 PF06068 TIP49 TIP49 P-loop domain 3.2E-153 20 361
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.3E-05 43 100
PF03796 DnaB_C DnaB-like helicase C terminal domain 6.6E-06 65 178
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-05 72 122
PF17856 TIP49_C TIP49 AAA-lid domain 1.1E-20 368 433
Pro_DTO377G3_2|g4665.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.9E-06 196 318
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.6E-43 197 329
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.0E-04 197 301
PF17862 AAA_lid_3 AAA+ lid domain 4.2E-10 353 389
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.5E-04 501 537
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-43 503 632
PF17862 AAA_lid_3 AAA+ lid domain 5.4E-10 658 689
Pro_DTO377G3_2|g610.t1 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 1.6E-18 44 124
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 4.1E-09 145 208
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-47 259 388
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.2E-05 259 330
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.5E-07 259 356
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.0E-05 259 377
PF17862 AAA_lid_3 AAA+ lid domain 2.1E-12 411 450
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.4E-47 533 665
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.6E-05 533 566
PF17862 AAA_lid_3 AAA+ lid domain 2.5E-09 688 730
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 8.4E-06 739 782
Pro_DTO377G3_2|g6789.t1 PF03215 Rad17 Rad17 P-loop domain 1.4E-08 34 93
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 7.0E-05 43 93
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-14 72 201
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.5E-07 148 206
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.1E-19 296 385
Pro_DTO377G3_2|g7401.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.7E-11 377 469
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.7E-04 377 402
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.4E-04 377 456
Pro_DTO377G3_2|g9023.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.8E-05 34 85
PF13173 AAA_14 AAA domain 3.0E-06 62 167
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.2E-11 63 180
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 2.3E-04 64 144
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 4.1E-09 103 183
PF08542 Rep_fac_C Replication factor C C-terminal domain 3.2E-21 249 335

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