Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00076
Short nameRRM_1
Long nameRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Proteins with at least one of this domain65
Total domain count95
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Pro_DTO377G3_2|g1057.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-21 275 344
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-21 381 451
Pro_DTO377G3_2|g1140.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-05 110 174
Pro_DTO377G3_2|g1196.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-19 4 74
Pro_DTO377G3_2|g1344.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.2E-12 821 883
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-09 899 963
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-19 990 1058
PF16842 RRM_occluded Occluded RNA-recognition motif 8.4E-27 1098 1175
Pro_DTO377G3_2|g144.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.8E-12 15 84
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.3E-12 176 236
Pro_DTO377G3_2|g1515.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-12 275 343
Pro_DTO377G3_2|g1526.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-19 38 108
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-13 151 219
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-14 308 367
Pro_DTO377G3_2|g1672.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.3E-13 83 154
Pro_DTO377G3_2|g1916.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-06 98 169
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-05 267 320
Pro_DTO377G3_2|g1949.t1 PF05383 La La domain 1.6E-21 105 161
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-08 217 265
Pro_DTO377G3_2|g2168.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-07 7 54
Pro_DTO377G3_2|g2169.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-11 9 59
Pro_DTO377G3_2|g2510.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-08 242 306
Pro_DTO377G3_2|g2539.t1 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-04 82 176
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-18 93 166
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.8E-21 187 257
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-16 314 377
Pro_DTO377G3_2|g2595.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.7E-08 370 433
Pro_DTO377G3_2|g2608.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.7E-11 494 563
Pro_DTO377G3_2|g3131.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-13 98 165
Pro_DTO377G3_2|g3326.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-14 392 455
Pro_DTO377G3_2|g3332.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.6E-16 103 172
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 4.1E-06 243 297
Pro_DTO377G3_2|g3854.t1 PF03467 Smg4_UPF3 Smg-4/UPF3 family 3.8E-43 37 205
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-06 415 460
Pro_DTO377G3_2|g3938.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-23 4 74
Pro_DTO377G3_2|g4018.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-14 168 233
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.5E-20 268 337
PF15519 RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein 1.7E-21 399 474
Pro_DTO377G3_2|g407.t1 PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 1.0E-24 3 93
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-15 104 177
Pro_DTO377G3_2|g4104.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-11 9 74
Pro_DTO377G3_2|g4220.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-15 52 121
Pro_DTO377G3_2|g430.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-09 67 132
Pro_DTO377G3_2|g4341.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.9E-05 253 324
Pro_DTO377G3_2|g4513.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-06 77 118
PF08662 eIF2A Eukaryotic translation initiation factor eIF2A 8.7E-34 404 626
Pro_DTO377G3_2|g4703.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-15 73 142
Pro_DTO377G3_2|g5046.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-15 43 112
Pro_DTO377G3_2|g5512.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-14 45 113
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-12 220 301
Pro_DTO377G3_2|g5541.t1 PF16131 Torus Torus domain 4.9E-39 56 161
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-07 200 248
Pro_DTO377G3_2|g559.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-15 86 152
Pro_DTO377G3_2|g5670.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.0E-15 222 291
Pro_DTO377G3_2|g5804.t1 PF01480 PWI PWI domain 3.4E-11 11 74
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-05 370 412
Pro_DTO377G3_2|g6107.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-08 27 97
Pro_DTO377G3_2|g6133.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.2E-10 6 66
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.7E-18 314 384
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.7E-10 497 558
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.4E-11 610 684
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.5E-15 715 783
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.9E-02 726 803
Pro_DTO377G3_2|g6179.t1 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-03 20 123
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-17 47 116
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.2E-02 134 214
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.3E-17 135 202
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.8E-19 228 296
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-08 331 368
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.5E-06 424 460
PF00658 PABP Poly-adenylate binding protein, unique domain 7.5E-28 644 709
Pro_DTO377G3_2|g6524.t1 PF00929 RNase_T Exonuclease 1.0E-06 21 135
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-07 257 324
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 7.8E-11 352 379
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 4.1E-09 429 459
Pro_DTO377G3_2|g6550.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.8E-06 113 183
PF01424 R3H R3H domain 1.6E-10 262 318
Pro_DTO377G3_2|g6811.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-07 119 191
Pro_DTO377G3_2|g6820.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.1E-12 182 246
Pro_DTO377G3_2|g6876.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-08 76 152
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.8E-14 187 244
Pro_DTO377G3_2|g7266.t1 PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 5.2E-36 5 170
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.3E-14 250 320
Pro_DTO377G3_2|g7272.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-09 62 128
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-14 156 226
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.2E-17 285 348
Pro_DTO377G3_2|g7373.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-19 35 104
Pro_DTO377G3_2|g7437.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-19 70 139
Pro_DTO377G3_2|g7442.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.4E-12 389 458
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.0E-07 519 573
Pro_DTO377G3_2|g7454.t1 PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 6.6E-26 62 177
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-07 395 455
Pro_DTO377G3_2|g7473.t1 PF04818 CTD_bind RNA polymerase II-binding domain. 1.9E-07 61 138
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-05 493 551
Pro_DTO377G3_2|g7544.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-14 105 173
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.3E-17 221 292
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.5E-17 393 461
Pro_DTO377G3_2|g764.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-09 277 334
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-08 365 425
Pro_DTO377G3_2|g7879.t1 PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 1.6E-06 31 68
PF04082 Fungal_trans Fungal specific transcription factor domain 3.5E-10 236 427
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-18 829 897
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.5E-15 918 987
Pro_DTO377G3_2|g7980.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.7E-19 10 80
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 2.4E-31 122 201
PF14304 CSTF_C Transcription termination and cleavage factor C-terminal 2.6E-17 250 289
Pro_DTO377G3_2|g8200.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-15 108 160
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-15 191 248
Pro_DTO377G3_2|g8230.t1 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-06 9 89
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-19 13 79
Pro_DTO377G3_2|g8258.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.0E-10 447 505
PF00806 PUF Pumilio-family RNA binding repeat 8.4E-05 649 682
PF00806 PUF Pumilio-family RNA binding repeat 3.9E-05 722 750
Pro_DTO377G3_2|g8469.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-06 324 386
PF04146 YTH YT521-B-like domain 3.4E-57 467 656
Pro_DTO377G3_2|g8555.t1 PF14605 Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 6.3E-07 5 62
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-07 8 73
Pro_DTO377G3_2|g8567.t1 PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 2.9E-44 25 152
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-14 209 273
Pro_DTO377G3_2|g8991.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-15 15 85
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-15 103 172
Pro_DTO377G3_2|g9199.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.0E-16 11 84
Pro_DTO377G3_2|g9352.t1 PF10378 RRM Putative RRM domain 2.6E-08 73 100
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-09 279 332
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-11 504 561
Pro_DTO377G3_2|g9405.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.9E-06 166 221
PF10443 RNA12 RNA12 protein 2.3E-166 330 749
Pro_DTO377G3_2|g9483.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-23 4 74

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