Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain47
Total domain count56
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Pro_DTO377G3_2|g1399.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-40 219 350
Pro_DTO377G3_2|g1419.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.4E-43 1062 1196
Pro_DTO377G3_2|g158.t1 PF08385 DHC_N1 Dynein heavy chain, N-terminal region 1 4.5E-124 267 846
PF08393 DHC_N2 Dynein heavy chain, N-terminal region 2 1.5E-113 1356 1754
PF12774 AAA_6 Hydrolytic ATP binding site of dynein motor region 3.3E-122 1897 2238
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.5E-10 2226 2360
PF17852 Dynein_AAA_lid Dynein heavy chain AAA lid domain 7.2E-16 2431 2549
PF12775 AAA_7 P-loop containing dynein motor region 3.1E-36 2562 2737
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.3E-04 2590 2727
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-04 2591 2716
PF12780 AAA_8 P-loop containing dynein motor region D4 7.4E-65 2908 3186
PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.0E-06 2932 3088
PF12777 MT Microtubule-binding stalk of dynein motor 2.9E-41 3201 3531
PF12781 AAA_9 ATP-binding dynein motor region 4.7E-75 3562 3781
PF03028 Dynein_heavy Dynein heavy chain region D6 P-loop domain 8.9E-25 4020 4136
PF18198 AAA_lid_11 Dynein heavy chain AAA lid domain 7.7E-30 4137 4309
Pro_DTO377G3_2|g162.t1 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 7.4E-29 9 254
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.4E-23 475 613
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 1.8E-04 475 600
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.2E-07 475 609
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 1.9E-69 700 905
PF13541 ChlI Subunit ChlI of Mg-chelatase 2.8E-06 795 876
Pro_DTO377G3_2|g1688.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.5E-15 691 806
Pro_DTO377G3_2|g1875.t1 PF08740 BCS1_N BCS1 N terminal 1.1E-47 54 245
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.8E-18 281 405
Pro_DTO377G3_2|g20.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.1E-09 87 142
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.6E-08 199 321
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-45 200 332
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.6E-08 200 293
PF03169 OPT OPT oligopeptide transporter protein 1.2E-17 431 547
Pro_DTO377G3_2|g2231.t1 PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 8.6E-11 172 245
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-39 318 459
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.2E-04 318 423
PF17862 AAA_lid_3 AAA+ lid domain 1.5E-10 486 529
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.1E-11 600 715
Pro_DTO377G3_2|g2623.t1 PF04212 MIT MIT (microtubule interacting and transport) domain 2.0E-23 7 72
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.2E-05 162 236
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.8E-42 167 295
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.2E-04 167 233
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 5.0E-29 370 429
Pro_DTO377G3_2|g2868.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.1E-09 58 113
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.3E-05 170 237
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.6E-05 170 291
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-42 171 304
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.9E-05 171 263
PF17862 AAA_lid_3 AAA+ lid domain 7.0E-10 326 370
Pro_DTO377G3_2|g2929.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.4E-18 111 187
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.4E-04 245 312
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-40 246 378
PF17862 AAA_lid_3 AAA+ lid domain 3.9E-09 400 440
Pro_DTO377G3_2|g3111.t1 PF06480 FtsH_ext FtsH Extracellular 4.7E-12 268 367
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.0E-42 472 604
PF17862 AAA_lid_3 AAA+ lid domain 3.8E-12 634 672
PF01434 Peptidase_M41 Peptidase family M41 3.3E-65 688 870
Pro_DTO377G3_2|g3130.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-21 244 368
PF00308 Bac_DnaA Bacterial dnaA protein 4.7E-06 244 402
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-41 527 654
PF17862 AAA_lid_3 AAA+ lid domain 7.2E-14 677 718
Pro_DTO377G3_2|g3145.t1 PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.0E-06 168 289
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-42 169 301
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 8.1E-07 169 279
PF17862 AAA_lid_3 AAA+ lid domain 2.0E-14 325 367
Pro_DTO377G3_2|g3175.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 7.2E-05 146 216
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-36 148 280
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.3E-04 148 225
PF17862 AAA_lid_3 AAA+ lid domain 1.7E-08 305 341
Pro_DTO377G3_2|g3223.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-17 542 664
Pro_DTO377G3_2|g3452.t1 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.4E-09 132 186
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.6E-04 244 363
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.2E-40 245 377
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 4.7E-05 246 338
PF17862 AAA_lid_3 AAA+ lid domain 3.1E-10 400 443
Pro_DTO377G3_2|g362.t1 PF13191 AAA_16 AAA ATPase domain 1.8E-08 182 262
PF13401 AAA_22 AAA domain 8.4E-09 205 327
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-10 210 337
PF09079 Cdc6_C CDC6, C terminal winged helix domain 3.5E-07 526 579
Pro_DTO377G3_2|g3694.t1 PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.5E-05 365 433
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-42 366 495
PF17862 AAA_lid_3 AAA+ lid domain 6.1E-09 518 550
PF01434 Peptidase_M41 Peptidase family M41 5.1E-56 576 753
Pro_DTO377G3_2|g3715.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.7E-17 418 532
Pro_DTO377G3_2|g3728.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.8E-08 128 246
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.0E-12 160 267
PF16193 AAA_assoc_2 AAA C-terminal domain 8.7E-22 299 368
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 1.2E-54 369 518
Pro_DTO377G3_2|g3784.t1 PF06068 TIP49 TIP49 P-loop domain 3.1E-167 15 367
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.9E-07 38 92
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.8E-07 67 117
PF17856 TIP49_C TIP49 AAA-lid domain 1.4E-19 374 440
Pro_DTO377G3_2|g3916.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.6E-14 226 343
PF17871 AAA_lid_9 AAA lid domain 1.1E-33 367 468
PF00158 Sigma54_activat Sigma-54 interaction domain 3.8E-05 634 751
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 7.8E-46 635 795
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.3E-09 636 755
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.5E-09 637 771
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 4.2E-24 803 885
Pro_DTO377G3_2|g4526.t1 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.8E-35 184 453
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.4E-05 187 263
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.3E-14 188 292
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.7E-07 460 531
Pro_DTO377G3_2|g4550.t1 PF06068 TIP49 TIP49 P-loop domain 3.2E-153 20 361
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.3E-05 43 100
PF03796 DnaB_C DnaB-like helicase C terminal domain 6.6E-06 65 178
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-05 72 122
PF17856 TIP49_C TIP49 AAA-lid domain 1.1E-20 368 433
Pro_DTO377G3_2|g4665.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.9E-06 196 318
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.6E-43 197 329
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.0E-04 197 301
PF17862 AAA_lid_3 AAA+ lid domain 4.2E-10 353 389
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.5E-04 501 537
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-43 503 632
PF17862 AAA_lid_3 AAA+ lid domain 5.4E-10 658 689
Pro_DTO377G3_2|g5743.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.4E-17 660 776
Pro_DTO377G3_2|g610.t1 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 1.6E-18 44 124
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 4.1E-09 145 208
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-47 259 388
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.2E-05 259 330
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.5E-07 259 356
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.0E-05 259 377
PF17862 AAA_lid_3 AAA+ lid domain 2.1E-12 411 450
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.4E-47 533 665
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.6E-05 533 566
PF17862 AAA_lid_3 AAA+ lid domain 2.5E-09 688 730
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 8.4E-06 739 782
Pro_DTO377G3_2|g6561.t1 PF03215 Rad17 Rad17 P-loop domain 5.3E-08 38 102
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 3.3E-11 58 209
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.8E-05 76 176
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.7E-16 77 207
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.4E-16 290 375
Pro_DTO377G3_2|g6789.t1 PF03215 Rad17 Rad17 P-loop domain 1.4E-08 34 93
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 7.0E-05 43 93
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-14 72 201
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.5E-07 148 206
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.1E-19 296 385
Pro_DTO377G3_2|g679.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.0E-07 589 742
Pro_DTO377G3_2|g7343.t1 PF01695 IstB_IS21 IstB-like ATP binding protein 1.2E-05 609 694
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.7E-42 610 744
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.0E-05 610 708
PF17862 AAA_lid_3 AAA+ lid domain 1.1E-09 772 810
Pro_DTO377G3_2|g7401.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.7E-11 377 469
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.7E-04 377 402
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.4E-04 377 456
Pro_DTO377G3_2|g7524.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-37 570 715
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.6E-04 570 697
PF17862 AAA_lid_3 AAA+ lid domain 2.0E-06 738 771
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.2E-07 784 818
Pro_DTO377G3_2|g7585.t1 PF13086 AAA_11 AAA domain 2.8E-25 467 789
PF13245 AAA_19 AAA domain 1.1E-08 479 784
PF13087 AAA_12 AAA domain 1.3E-40 803 1020
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-10 1323 1430
PF17866 AAA_lid_6 AAA lid domain 1.9E-05 1495 1542
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.0E-09 1602 1718
PF17866 AAA_lid_6 AAA lid domain 1.8E-07 1772 1813
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.2E-12 1883 2009
Pro_DTO377G3_2|g7817.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-10 123 254
PF17871 AAA_lid_9 AAA lid domain 1.2E-35 261 363
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 5.9E-44 516 689
PF00158 Sigma54_activat Sigma-54 interaction domain 2.7E-04 519 627
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.2E-08 521 638
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-05 522 639
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 3.1E-26 696 776
Pro_DTO377G3_2|g8108.t1 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 1.0E-32 203 459
PF08298 AAA_PrkA PrkA AAA domain 1.6E-05 574 633
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-21 610 746
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.4E-07 610 704
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.4E-05 611 736
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 7.0E-64 881 1086
Pro_DTO377G3_2|g8547.t1 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 2.6E-29 129 218
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-08 557 689
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-43 876 1002
PF17862 AAA_lid_3 AAA+ lid domain 8.1E-08 1034 1063
Pro_DTO377G3_2|g8658.t1 PF13191 AAA_16 AAA ATPase domain 7.0E-08 340 437
PF13401 AAA_22 AAA domain 5.8E-09 362 473
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.0E-15 366 508
PF17872 AAA_lid_10 AAA lid domain 4.3E-11 539 573
Pro_DTO377G3_2|g9023.t1 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.8E-05 34 85
PF13173 AAA_14 AAA domain 3.0E-06 62 167
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.2E-11 63 180
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 2.3E-04 64 144
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 4.1E-09 103 183
PF08542 Rep_fac_C Replication factor C C-terminal domain 3.2E-21 249 335
Pro_DTO377G3_2|g9211.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-37 683 810
PF17862 AAA_lid_3 AAA+ lid domain 2.4E-08 833 868
Pro_DTO377G3_2|g9515.t1 PF08740 BCS1_N BCS1 N terminal 1.9E-47 54 261
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.0E-16 299 452
Pro_DTO377G3_2|g956.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-04 50 112
Pro_DTO377G3_2|g9603.t1 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 4.2E-10 21 184
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.3E-06 38 179
Pro_DTO377G3_2|g9606.t1 PF00533 BRCT BRCA1 C Terminus (BRCT) domain 6.5E-13 323 398
PF03215 Rad17 Rad17 P-loop domain 9.7E-06 471 576
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-09 525 609
PF08519 RFC1 Replication factor RFC1 C terminal domain 2.3E-57 801 954
Pro_DTO377G3_2|g9665.t1 PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.5E-18 298 419
PF17867 AAA_lid_7 Midasin AAA lid domain 1.3E-17 450 562
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-07 633 679
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.1E-08 795 884
PF17865 AAA_lid_5 Midasin AAA lid domain 1.4E-27 898 999
PF07728 AAA_5 AAA domain (dynein-related subfamily) 6.9E-22 1068 1204
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 7.8E-05 1069 1205
PF17867 AAA_lid_7 Midasin AAA lid domain 5.8E-11 1216 1309
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-06 1358 1407
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.9E-11 1466 1555
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-04 1737 1771
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 8.7E-11 1737 1876
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.9E-19 1737 1875
PF17867 AAA_lid_7 Midasin AAA lid domain 2.2E-11 1887 1983
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.6E-06 2046 2094
PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.3E-08 2182 2270
PF03028 Dynein_heavy Dynein heavy chain region D6 P-loop domain 2.9E-05 2189 2271
Pro_DTO377G3_2|g994.t1 PF13191 AAA_16 AAA ATPase domain 3.5E-16 266 430
PF07693 KAP_NTPase KAP family P-loop domain 1.1E-04 285 363
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.3E-08 292 453
PF05729 NACHT NACHT domain 5.5E-07 292 445
PF14629 ORC4_C Origin recognition complex (ORC) subunit 4 C-terminus 2.3E-47 468 705

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail