Sequences in assembly | 156 |
---|---|
Total assembly length (Mbp) | 28.29 |
Assembly GC content (%) | 47.97 |
Assembly gaps (%) | 0.0 |
L50 number (#) | 17 |
N50 length (bp) | 465303 |
Total repeats (#) | 6941 |
Repetitive content (bp, %) | 1219115 (4.31%) |
Genes | 9945 |
Gene length (median) | 1389 |
Transcript length (median) | 1230 |
Exon length (median) | 225 |
CDS length (median) | 1230 |
Protein length (median) | 410 |
Spliced genes (total, %) | 8032 (80.76%) |
Exons per gene (median) | 3 |
Intron length (median) | 58 |
Introns per spliced gene (median) | 2 |
Gene density (genes / Mbp) | 351.6 |
Coding content of assembly (bp, %) | 14537328 (51.4%) |
Proteins with internal stops (total, %) | 0 (0.0%) |
Unique PFAM domains | 4058 |
Genes with PFAM (total, %) | 7463 (75.04%) |
Genes with GO (total, %) | 4793 (48.2%) |
Genes with signalP (total, %) | 712 (7.16%) |
Genes with TMHMM (total, %) | 1999 (20.1%) |
Genes annotated as TF (total, %) | 412 (4.14%) |
Genes annotated as MEROPS protease (total, %) | 304 (3.06%) |
Genes annotated as CAZyme (total, %) | 378 (3.8%) |
Secondary metabolism gene cluster | 32 |
CEGMA completeness (%) | 99.56 |
BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |