© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 66 |
|---|---|
| Total assembly length (Mbp) | 26.76 |
| Assembly GC content (%) | 48.44 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 7 |
| N50 length (bp) | 1053536 |
| Total repeats (#) | 5938 |
| Repetitive content (bp, %) | 816468 (3.05%) |
| Genes | 9751 |
| Gene length (median) | 1398 |
| Transcript length (median) | 1239 |
| Exon length (median) | 223 |
| CDS length (median) | 1239 |
| Protein length (median) | 413 |
| Spliced genes (total, %) | 7907 (81.09%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 364.33 |
| Coding content of assembly (bp, %) | 14303079 (53.44%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4052 |
| Genes with PFAM (total, %) | 7376 (75.64%) |
| Genes with GO (total, %) | 4745 (48.66%) |
| Genes with signalP (total, %) | 698 (7.16%) |
| Genes with TMHMM (total, %) | 1966 (20.16%) |
| Genes annotated as TF (total, %) | 408 (4.18%) |
| Genes annotated as MEROPS protease (total, %) | 302 (3.1%) |
| Genes annotated as CAZyme (total, %) | 370 (3.79%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 100.0% (Single-copy: 99.66%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.0% |