© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 104 |
|---|---|
| Total assembly length (Mbp) | 28.45 |
| Assembly GC content (%) | 48.12 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 13 |
| N50 length (bp) | 624213 |
| Total repeats (#) | 6758 |
| Repetitive content (bp, %) | 1291879 (4.54%) |
| Genes | 10006 |
| Gene length (median) | 1388 |
| Transcript length (median) | 1230 |
| Exon length (median) | 226 |
| CDS length (median) | 1230 |
| Protein length (median) | 410 |
| Spliced genes (total, %) | 8063 (80.58%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 351.71 |
| Coding content of assembly (bp, %) | 14623830 (51.4%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4072 |
| Genes with PFAM (total, %) | 7467 (74.63%) |
| Genes with GO (total, %) | 4790 (47.87%) |
| Genes with signalP (total, %) | 716 (7.16%) |
| Genes with TMHMM (total, %) | 1989 (19.88%) |
| Genes annotated as TF (total, %) | 414 (4.14%) |
| Genes annotated as MEROPS protease (total, %) | 300 (3.0%) |
| Genes annotated as CAZyme (total, %) | 380 (3.8%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 100.0% (Single-copy: 99.66%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.0% |