© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 284 |
|---|---|
| Total assembly length (Mbp) | 30.9 |
| Assembly GC content (%) | 46.85 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 34 |
| N50 length (bp) | 299303 |
| Total repeats (#) | 7312 |
| Repetitive content (bp, %) | 1283472 (4.15%) |
| Genes | 10010 |
| Gene length (median) | 1386 |
| Transcript length (median) | 1227 |
| Exon length (median) | 226 |
| CDS length (median) | 1227 |
| Protein length (median) | 409 |
| Spliced genes (total, %) | 8066 (80.58%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 324.0 |
| Coding content of assembly (bp, %) | 14604795 (47.27%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4068 |
| Genes with PFAM (total, %) | 7468 (74.61%) |
| Genes with GO (total, %) | 4789 (47.84%) |
| Genes with signalP (total, %) | 720 (7.19%) |
| Genes with TMHMM (total, %) | 1986 (19.84%) |
| Genes annotated as TF (total, %) | 414 (4.14%) |
| Genes annotated as MEROPS protease (total, %) | 301 (3.01%) |
| Genes annotated as CAZyme (total, %) | 381 (3.81%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 100.0% (Single-copy: 99.66%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.0% |