© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 239 |
|---|---|
| Total assembly length (Mbp) | 30.0 |
| Assembly GC content (%) | 48.16 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 13 |
| N50 length (bp) | 746005 |
| Total repeats (#) | 8068 |
| Repetitive content (bp, %) | 1801920 (6.01%) |
| Genes | 10485 |
| Gene length (median) | 1371 |
| Transcript length (median) | 1209 |
| Exon length (median) | 228 |
| CDS length (median) | 1209 |
| Protein length (median) | 403 |
| Spliced genes (total, %) | 8382 (79.94%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 349.48 |
| Coding content of assembly (bp, %) | 15142230 (50.47%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4069 |
| Genes with PFAM (total, %) | 7682 (73.27%) |
| Genes with GO (total, %) | 4916 (46.89%) |
| Genes with signalP (total, %) | 737 (7.03%) |
| Genes with TMHMM (total, %) | 2077 (19.81%) |
| Genes annotated as TF (total, %) | 438 (4.18%) |
| Genes annotated as MEROPS protease (total, %) | 335 (3.2%) |
| Genes annotated as CAZyme (total, %) | 390 (3.72%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 98.97%, Duplicated: 0.69%), Fragmented: 0.0%, Missing: 0.34% |