Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO163C3_2|g570.t1
Gene name
Locationscaffold_001:1488659..1489403
Strand-
Gene length (bp)744
Transcript length (bp)744
Coding sequence length (bp)744
Protein length (aa) 248

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10447 EXOSC1 Exosome component EXOSC1/CSL4 1.8E-28 90 194
PF14382 ECR1_N Exosome complex exonuclease RRP4 N-terminal region 4.3E-11 7 42

GO

GO Term Description Terminal node
GO:0000178 exosome (RNase complex) Yes
GO:0003723 RNA binding Yes
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:1905354 exoribonuclease complex No
GO:1902494 catalytic complex No
GO:0003676 nucleic acid binding No
GO:0032991 protein-containing complex No
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0005488 binding No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID2
Orthogroup748
Change Orthofinder run
Species Protein ID
Penicillium roqueforti DTO002I6 Pro_DTO002I6_2|g1174.t1
Penicillium roqueforti DTO003C3 Pro_DTO003C3_2|g3320.t1
Penicillium roqueforti DTO003H1 (CBS 147308) Pro_DTO003H1_2|g347.t1
Penicillium roqueforti DTO006G1 Pro_DTO006G1_2|g922.t1
Penicillium roqueforti DTO006G7 Pro_DTO006G7_3|g347.t1
Penicillium roqueforti DTO012A1 Pro_DTO012A1_2|g1364.t1
Penicillium roqueforti DTO012A2 (CBS 147309) Pro_DTO012A2_2|g818.t1
Penicillium roqueforti DTO012A6 (CBS 147310) Pro_DTO012A6_2|g846.t1
Penicillium roqueforti DTO012A7 Pro_DTO012A7_2|g4716.t1
Penicillium roqueforti DTO012A8 Pro_DTO012A8_2|g3928.t1
Penicillium roqueforti DTO012A9 Pro_DTO012A9_2|g301.t1
Penicillium roqueforti DTO013E5 Pro_DTO013E5_2|g395.t1
Penicillium roqueforti DTO013F2 Pro_DTO013F2_2|g261.t1
Penicillium roqueforti DTO013F5 (CBS 147311) Pro_DTO013F5_2|g4450.t1
Penicillium roqueforti DTO027I6 Pro_DTO027I6_2|g3498.t1
Penicillium roqueforti DTO032C6 Pro_DTO032C6_2|g330.t1
Penicillium roqueforti DTO039G3 Pro_DTO039G3_2|g568.t1
Penicillium roqueforti DTO046C5 Pro_DTO046C5_2|g347.t1
Penicillium roqueforti DTO070G2 (CBS 147317) Pro_DTO070G2_2|g1188.t1
Penicillium roqueforti DTO081F9 (CBS 147318) Pro_DTO081F9_2|g1247.t1
Penicillium roqueforti DTO101D6 (CBS 147325) Pro_DTO101D6_2|g568.t1
Penicillium roqueforti DTO102I9 (CBS 147326) Pro_DTO102I9_2|g4154.t1
Penicillium roqueforti DTO126G2 (CBS 147330) Pro_DTO126G2_2|g186.t1
Penicillium roqueforti DTO127F7 (CBS 147331) Pro_DTO127F7_2|g1371.t1
Penicillium roqueforti DTO127F9 (CBS 147332) Pro_DTO127F9_2|g1354.t1
Penicillium roqueforti DTO130C1 (CBS 147333) Pro_DTO130C1_2|g1407.t1
Penicillium roqueforti DTO163C3 (CBS 147337) Pro_DTO163C3_2|g570.t1 (this protein)
Penicillium roqueforti DTO163F5 (CBS 147338) Pro_DTO163F5_2|g5014.t1
Penicillium roqueforti DTO163G4 (CBS 147339) Pro_DTO163G4_2|g330.t1
Penicillium roqueforti DTO265D5 (CBS 147372) Pro_DTO265D5_2|g549.t1
Penicillium roqueforti DTO369A1 (CBS 147354) Pro_DTO369A1_2|g249.t1
Penicillium roqueforti DTO375B1 (CBS 147355) Pro_DTO375B1_2|g3296.t1
Penicillium roqueforti DTO377G2 (LCP 96.3914a) Pro_DTO377G2_2|g1532.t1
Penicillium roqueforti LCP96 04111 Pro_DTO377G3_2|g414.t1

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO163C3_2|g570.t1
MASLPPIAIPGQRLGPLSTYSAGPGTHVQQSFIYASIAGPVIADPAQPKSQTRPTLRVSRVIYSKDQAGSTPAGP
VVVPSIASKPRYNTLPAVDSIVLARVTRVQKRQATVSILVVLDESAAQSQGQSPTASDNDNVASILTSAANPENH
SSTDELRFQALIRKEDVRAVEKDRVVMDEMFRVGDIVRGSVISLGDQSFYYITTARNDLGVVMARSDAGNMMFPV
SWKEMRDPVTGTSEQRKVARPF*
Coding >Pro_DTO163C3_2|g570.t1
ATGGCTTCTCTACCACCTATTGCTATTCCTGGGCAACGCCTCGGCCCTTTATCCACATATTCTGCAGGTCCCGGC
ACACACGTTCAGCAATCCTTCATCTACGCCTCCATCGCCGGTCCTGTGATTGCGGACCCTGCACAGCCGAAGTCA
CAAACAAGACCGACCCTCAGAGTTTCACGAGTGATATATTCCAAAGACCAAGCAGGCTCAACCCCGGCTGGTCCC
GTCGTCGTACCCTCAATCGCGTCGAAACCTCGCTATAACACCCTCCCCGCGGTAGACTCCATCGTTCTTGCACGA
GTGACCCGTGTACAGAAGCGACAAGCTACAGTTTCTATCCTCGTCGTCCTCGACGAATCAGCAGCACAATCTCAA
GGCCAATCACCAACGGCCTCAGACAATGACAATGTCGCCTCCATCCTCACATCTGCTGCCAACCCAGAAAACCAC
AGCAGCACCGACGAACTGCGCTTCCAGGCACTTATCCGGAAAGAGGATGTACGGGCTGTTGAGAAGGACCGTGTC
GTTATGGATGAGATGTTCCGTGTCGGCGATATCGTTCGCGGCTCCGTTATCTCGCTTGGCGATCAGAGCTTTTAC
TACATCACTACTGCACGCAATGATCTCGGTGTTGTCATGGCTCGCAGTGACGCTGGCAACATGATGTTCCCTGTC
AGCTGGAAGGAAATGAGAGATCCTGTCACTGGAACTAGTGAGCAGAGGAAGGTCGCCAGGCCGTTCTGA
Transcript >Pro_DTO163C3_2|g570.t1
ATGGCTTCTCTACCACCTATTGCTATTCCTGGGCAACGCCTCGGCCCTTTATCCACATATTCTGCAGGTCCCGGC
ACACACGTTCAGCAATCCTTCATCTACGCCTCCATCGCCGGTCCTGTGATTGCGGACCCTGCACAGCCGAAGTCA
CAAACAAGACCGACCCTCAGAGTTTCACGAGTGATATATTCCAAAGACCAAGCAGGCTCAACCCCGGCTGGTCCC
GTCGTCGTACCCTCAATCGCGTCGAAACCTCGCTATAACACCCTCCCCGCGGTAGACTCCATCGTTCTTGCACGA
GTGACCCGTGTACAGAAGCGACAAGCTACAGTTTCTATCCTCGTCGTCCTCGACGAATCAGCAGCACAATCTCAA
GGCCAATCACCAACGGCCTCAGACAATGACAATGTCGCCTCCATCCTCACATCTGCTGCCAACCCAGAAAACCAC
AGCAGCACCGACGAACTGCGCTTCCAGGCACTTATCCGGAAAGAGGATGTACGGGCTGTTGAGAAGGACCGTGTC
GTTATGGATGAGATGTTCCGTGTCGGCGATATCGTTCGCGGCTCCGTTATCTCGCTTGGCGATCAGAGCTTTTAC
TACATCACTACTGCACGCAATGATCTCGGTGTTGTCATGGCTCGCAGTGACGCTGGCAACATGATGTTCCCTGTC
AGCTGGAAGGAAATGAGAGATCCTGTCACTGGAACTAGTGAGCAGAGGAAGGTCGCCAGGCCGTTCTGA
Gene >Pro_DTO163C3_2|g570.t1
ATGGCTTCTCTACCACCTATTGCTATTCCTGGGCAACGCCTCGGCCCTTTATCCACATATTCTGCAGGTCCCGGC
ACACACGTTCAGCAATCCTTCATCTACGCCTCCATCGCCGGTCCTGTGATTGCGGACCCTGCACAGCCGAAGTCA
CAAACAAGACCGACCCTCAGAGTTTCACGAGTGATATATTCCAAAGACCAAGCAGGCTCAACCCCGGCTGGTCCC
GTCGTCGTACCCTCAATCGCGTCGAAACCTCGCTATAACACCCTCCCCGCGGTAGACTCCATCGTTCTTGCACGA
GTGACCCGTGTACAGAAGCGACAAGCTACAGTTTCTATCCTCGTCGTCCTCGACGAATCAGCAGCACAATCTCAA
GGCCAATCACCAACGGCCTCAGACAATGACAATGTCGCCTCCATCCTCACATCTGCTGCCAACCCAGAAAACCAC
AGCAGCACCGACGAACTGCGCTTCCAGGCACTTATCCGGAAAGAGGATGTACGGGCTGTTGAGAAGGACCGTGTC
GTTATGGATGAGATGTTCCGTGTCGGCGATATCGTTCGCGGCTCCGTTATCTCGCTTGGCGATCAGAGCTTTTAC
TACATCACTACTGCACGCAATGATCTCGGTGTTGTCATGGCTCGCAGTGACGCTGGCAACATGATGTTCCCTGTC
AGCTGGAAGGAAATGAGAGATCCTGTCACTGGAACTAGTGAGCAGAGGAAGGTCGCCAGGCCGTTCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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