© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 174 |
|---|---|
| Total assembly length (Mbp) | 28.06 |
| Assembly GC content (%) | 48.02 |
| Assembly gaps (%) | 0.02 |
| L50 number (#) | 11 |
| N50 length (bp) | 719157 |
| Total repeats (#) | 6920 |
| Repetitive content (bp, %) | 1301529 (4.64%) |
| Genes | 9939 |
| Gene length (median) | 1391 |
| Transcript length (median) | 1230 |
| Exon length (median) | 225 |
| CDS length (median) | 1230 |
| Protein length (median) | 410 |
| Spliced genes (total, %) | 8021 (80.7%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 354.2 |
| Coding content of assembly (bp, %) | 14493858 (51.65%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4061 |
| Genes with PFAM (total, %) | 7455 (75.01%) |
| Genes with GO (total, %) | 4782 (48.11%) |
| Genes with signalP (total, %) | 707 (7.11%) |
| Genes with TMHMM (total, %) | 1995 (20.07%) |
| Genes annotated as TF (total, %) | 417 (4.2%) |
| Genes annotated as MEROPS protease (total, %) | 302 (3.04%) |
| Genes annotated as CAZyme (total, %) | 381 (3.83%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.31% (Single-copy: 98.97%, Duplicated: 0.34%), Fragmented: 0.34%, Missing: 0.34% |