© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 141 |
|---|---|
| Total assembly length (Mbp) | 28.96 |
| Assembly GC content (%) | 48.07 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 13 |
| N50 length (bp) | 658569 |
| Total repeats (#) | 7265 |
| Repetitive content (bp, %) | 1540481 (5.32%) |
| Genes | 10109 |
| Gene length (median) | 1383 |
| Transcript length (median) | 1224 |
| Exon length (median) | 227 |
| CDS length (median) | 1224 |
| Protein length (median) | 408 |
| Spliced genes (total, %) | 8135 (80.47%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 349.04 |
| Coding content of assembly (bp, %) | 14715366 (50.81%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4078 |
| Genes with PFAM (total, %) | 7523 (74.42%) |
| Genes with GO (total, %) | 4816 (47.64%) |
| Genes with signalP (total, %) | 720 (7.12%) |
| Genes with TMHMM (total, %) | 2005 (19.83%) |
| Genes annotated as TF (total, %) | 418 (4.13%) |
| Genes annotated as MEROPS protease (total, %) | 302 (2.99%) |
| Genes annotated as CAZyme (total, %) | 380 (3.76%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.31% (Single-copy: 98.97%, Duplicated: 0.34%), Fragmented: 0.34%, Missing: 0.34% |