Protein ID | Pro_DTO070G2_2|g9609.t1 |
Gene name | |
Location | scaffold_30:78627..79698 |
Strand | + |
Gene length (bp) | 1071 |
Transcript length (bp) | 561 |
Coding sequence length (bp) | 561 |
Protein length (aa) | 187 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00098 | zf-CCHC | Zinc knuckle | 4.6E-05 | 10 | 26 |
PF00098 | zf-CCHC | Zinc knuckle | 5.1E-06 | 31 | 46 |
PF00098 | zf-CCHC | Zinc knuckle | 3.7E-08 | 53 | 69 |
PF00098 | zf-CCHC | Zinc knuckle | 1.3E-07 | 82 | 98 |
PF00098 | zf-CCHC | Zinc knuckle | 3.0E-07 | 128 | 144 |
PF00098 | zf-CCHC | Zinc knuckle | 2.6E-09 | 146 | 162 |
PF00098 | zf-CCHC | Zinc knuckle | 8.6E-05 | 171 | 186 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 6.9E-02 | 11 | 26 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 1.2E+00 | 54 | 68 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 5.7E-01 | 83 | 97 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 2.6E-01 | 127 | 143 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 1.9E-02 | 148 | 162 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 3.3E+00 | 169 | 185 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008270 | zinc ion binding | Yes |
GO:0003676 | nucleic acid binding | Yes |
GO:0005488 | binding | No |
GO:0043169 | cation binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0046914 | transition metal ion binding | No |
GO:0043167 | ion binding | No |
GO:0046872 | metal ion binding | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 12 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
Zinc finger, CCHC-type |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO070G2_2|g9609.t1 MDFPPAGRGGCFNCGEASHQAKDCPKKGNPTCYNCNGQGHLSRECQEPAKEKSCYRCGQTGHLSRECPQGGDSNY SGGGSQECYKCGQVGHIARNCSQGGNYSGGYSAGGGYGGGFSGPGGAGGRQQTCYSCGGFGHMARDCTQGQKCYN CGEVGHVSRDCPTEAKGERMCYKCKQPGHVQSACPN* |
Coding | >Pro_DTO070G2_2|g9609.t1 ATGGACTTCCCTCCTGCAGGACGTGGTGGCTGTTTCAACTGCGGCGAGGCCTCCCACCAGGCCAAGGACTGCCCT AAGAAGGGAAACCCTACCTGCTACAATTGCAACGGCCAAGGTCACTTGAGCCGCGAATGCCAGGAACCTGCCAAG GAGAAGTCGTGCTACCGTTGTGGCCAAACCGGACATCTTTCTCGCGAATGCCCTCAGGGAGGCGACAGCAACTAC AGCGGTGGTGGTTCCCAGGAGTGCTACAAGTGCGGACAGGTCGGCCACATCGCGCGGAACTGCTCCCAGGGTGGT AACTACAGTGGTGGTTACAGCGCTGGAGGCGGCTACGGTGGTGGGTTCAGTGGTCCAGGTGGTGCCGGTGGTCGC CAACAGACCTGCTACTCCTGCGGTGGCTTCGGCCACATGGCCCGTGACTGCACTCAGGGTCAGAAGTGCTACAAC TGCGGCGAAGTCGGCCATGTCTCTCGCGACTGCCCCACTGAGGCCAAGGGTGAGCGCATGTGCTACAAGTGCAAG CAGCCCGGCCACGTTCAGTCCGCTTGCCCTAACTAG |
Transcript | >Pro_DTO070G2_2|g9609.t1 ATGGACTTCCCTCCTGCAGGACGTGGTGGCTGTTTCAACTGCGGCGAGGCCTCCCACCAGGCCAAGGACTGCCCT AAGAAGGGAAACCCTACCTGCTACAATTGCAACGGCCAAGGTCACTTGAGCCGCGAATGCCAGGAACCTGCCAAG GAGAAGTCGTGCTACCGTTGTGGCCAAACCGGACATCTTTCTCGCGAATGCCCTCAGGGAGGCGACAGCAACTAC AGCGGTGGTGGTTCCCAGGAGTGCTACAAGTGCGGACAGGTCGGCCACATCGCGCGGAACTGCTCCCAGGGTGGT AACTACAGTGGTGGTTACAGCGCTGGAGGCGGCTACGGTGGTGGGTTCAGTGGTCCAGGTGGTGCCGGTGGTCGC CAACAGACCTGCTACTCCTGCGGTGGCTTCGGCCACATGGCCCGTGACTGCACTCAGGGTCAGAAGTGCTACAAC TGCGGCGAAGTCGGCCATGTCTCTCGCGACTGCCCCACTGAGGCCAAGGGTGAGCGCATGTGCTACAAGTGCAAG CAGCCCGGCCACGTTCAGTCCGCTTGCCCTAACTAG |
Gene | >Pro_DTO070G2_2|g9609.t1 ATGGACTTCCCTCCTGCAGGACGTGGTGGCTGTTTCAACTGTAAGTTCTTTTTTCCCTTCTACTGCAACCTGGAC TGGGAGAAATAAGCACCGGCTTGGTCAAATCCTGTGAATACGTCATATTCATTCGGAGAGCTTGTGGTACTCGAA TTGGATCCGGGGCTCTATTGCGACATCTATTGCGCAAGCTGATATTTACTAACTCTCTTCTTTTATAGGCGGCGA GGCCTCCCACCAGGTAATTACAACCTTTGCCCGATTTCCTCTTGAAAACTTGATTTAAAAAAGGAGACTCGAAGC TTATCTGCTCTTTCTAGGCCAAGGACTGCCCTAAGAAGGGAAACCCTACCTGGTAATTTCTCTTTCCCTTTGATC TGTCAATTCAAAAAGCTAACCCAGTCCTCCAATAGCTACAATTGCAACGGTACGCTCACTTCAAAATCGTCCATT GGATCTATGGACTGGTTATTAGAACGTTGCTAATCAATTCAATCACAATTTCAGGCCAAGGTCACTTGAGTAAGT TGGAATTGAATATCGCGGACTCTATTTGGACTTGACTAACATTTTTTTAAAAAGGCCGCGAATGCCAGGAACCTG CCAAGGAGAAGTCGTGCTACCGTTGTGGCCAAACCGGACATCTTTCTCGCGAATGCCCTCAGGGAGGCGACAGCA ACTACAGCGGTGGTGGTTCCCAGGAGTGCTACAAGTGCGGACAGGTCGGCCACATCGCGCGGAACTGCTCCCAGG GTGGTAACTACAGTGGTGGTTACAGCGCTGGAGGCGGCTACGGTGGTGGGTTCAGTGGTCCAGGTGGTGCCGGTG GTCGCCAACAGACCTGCTACTCCTGCGGTGGCTTCGGCCACATGGCCCGTGACTGCACTCAGGGTCAGAAGTGCT ACAACTGTCAGTTATTCCGGGTTTTCTCATTCGCCGGAATATGCTACTAACTTGTAAGTAGGCGGCGAAGTCGGC CATGTCTCTCGCGACTGCCCCACTGAGGCCAAGGGTGAGCGCATGTGCTACAAGTGCAAGCAGCCCGGCCACGTT CAGTCCGCTTGCCCTAACTAG |