Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO070G2_2|g9609.t1
Gene name
Locationscaffold_30:78627..79698
Strand+
Gene length (bp)1071
Transcript length (bp)561
Coding sequence length (bp)561
Protein length (aa) 187

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00098 zf-CCHC Zinc knuckle 4.6E-05 10 26
PF00098 zf-CCHC Zinc knuckle 5.1E-06 31 46
PF00098 zf-CCHC Zinc knuckle 3.7E-08 53 69
PF00098 zf-CCHC Zinc knuckle 1.3E-07 82 98
PF00098 zf-CCHC Zinc knuckle 3.0E-07 128 144
PF00098 zf-CCHC Zinc knuckle 2.6E-09 146 162
PF00098 zf-CCHC Zinc knuckle 8.6E-05 171 186
PF14392 zf-CCHC_4 Zinc knuckle 6.9E-02 11 26
PF14392 zf-CCHC_4 Zinc knuckle 1.2E+00 54 68
PF14392 zf-CCHC_4 Zinc knuckle 5.7E-01 83 97
PF14392 zf-CCHC_4 Zinc knuckle 2.6E-01 127 143
PF14392 zf-CCHC_4 Zinc knuckle 1.9E-02 148 162
PF14392 zf-CCHC_4 Zinc knuckle 3.3E+00 169 185

GO

GO Term Description Terminal node
GO:0008270 zinc ion binding Yes
GO:0003676 nucleic acid binding Yes
GO:0005488 binding No
GO:0043169 cation binding No
GO:1901363 heterocyclic compound binding No
GO:0046914 transition metal ion binding No
GO:0043167 ion binding No
GO:0046872 metal ion binding No
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Zinc finger, CCHC-type

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO070G2_2|g9609.t1
MDFPPAGRGGCFNCGEASHQAKDCPKKGNPTCYNCNGQGHLSRECQEPAKEKSCYRCGQTGHLSRECPQGGDSNY
SGGGSQECYKCGQVGHIARNCSQGGNYSGGYSAGGGYGGGFSGPGGAGGRQQTCYSCGGFGHMARDCTQGQKCYN
CGEVGHVSRDCPTEAKGERMCYKCKQPGHVQSACPN*
Coding >Pro_DTO070G2_2|g9609.t1
ATGGACTTCCCTCCTGCAGGACGTGGTGGCTGTTTCAACTGCGGCGAGGCCTCCCACCAGGCCAAGGACTGCCCT
AAGAAGGGAAACCCTACCTGCTACAATTGCAACGGCCAAGGTCACTTGAGCCGCGAATGCCAGGAACCTGCCAAG
GAGAAGTCGTGCTACCGTTGTGGCCAAACCGGACATCTTTCTCGCGAATGCCCTCAGGGAGGCGACAGCAACTAC
AGCGGTGGTGGTTCCCAGGAGTGCTACAAGTGCGGACAGGTCGGCCACATCGCGCGGAACTGCTCCCAGGGTGGT
AACTACAGTGGTGGTTACAGCGCTGGAGGCGGCTACGGTGGTGGGTTCAGTGGTCCAGGTGGTGCCGGTGGTCGC
CAACAGACCTGCTACTCCTGCGGTGGCTTCGGCCACATGGCCCGTGACTGCACTCAGGGTCAGAAGTGCTACAAC
TGCGGCGAAGTCGGCCATGTCTCTCGCGACTGCCCCACTGAGGCCAAGGGTGAGCGCATGTGCTACAAGTGCAAG
CAGCCCGGCCACGTTCAGTCCGCTTGCCCTAACTAG
Transcript >Pro_DTO070G2_2|g9609.t1
ATGGACTTCCCTCCTGCAGGACGTGGTGGCTGTTTCAACTGCGGCGAGGCCTCCCACCAGGCCAAGGACTGCCCT
AAGAAGGGAAACCCTACCTGCTACAATTGCAACGGCCAAGGTCACTTGAGCCGCGAATGCCAGGAACCTGCCAAG
GAGAAGTCGTGCTACCGTTGTGGCCAAACCGGACATCTTTCTCGCGAATGCCCTCAGGGAGGCGACAGCAACTAC
AGCGGTGGTGGTTCCCAGGAGTGCTACAAGTGCGGACAGGTCGGCCACATCGCGCGGAACTGCTCCCAGGGTGGT
AACTACAGTGGTGGTTACAGCGCTGGAGGCGGCTACGGTGGTGGGTTCAGTGGTCCAGGTGGTGCCGGTGGTCGC
CAACAGACCTGCTACTCCTGCGGTGGCTTCGGCCACATGGCCCGTGACTGCACTCAGGGTCAGAAGTGCTACAAC
TGCGGCGAAGTCGGCCATGTCTCTCGCGACTGCCCCACTGAGGCCAAGGGTGAGCGCATGTGCTACAAGTGCAAG
CAGCCCGGCCACGTTCAGTCCGCTTGCCCTAACTAG
Gene >Pro_DTO070G2_2|g9609.t1
ATGGACTTCCCTCCTGCAGGACGTGGTGGCTGTTTCAACTGTAAGTTCTTTTTTCCCTTCTACTGCAACCTGGAC
TGGGAGAAATAAGCACCGGCTTGGTCAAATCCTGTGAATACGTCATATTCATTCGGAGAGCTTGTGGTACTCGAA
TTGGATCCGGGGCTCTATTGCGACATCTATTGCGCAAGCTGATATTTACTAACTCTCTTCTTTTATAGGCGGCGA
GGCCTCCCACCAGGTAATTACAACCTTTGCCCGATTTCCTCTTGAAAACTTGATTTAAAAAAGGAGACTCGAAGC
TTATCTGCTCTTTCTAGGCCAAGGACTGCCCTAAGAAGGGAAACCCTACCTGGTAATTTCTCTTTCCCTTTGATC
TGTCAATTCAAAAAGCTAACCCAGTCCTCCAATAGCTACAATTGCAACGGTACGCTCACTTCAAAATCGTCCATT
GGATCTATGGACTGGTTATTAGAACGTTGCTAATCAATTCAATCACAATTTCAGGCCAAGGTCACTTGAGTAAGT
TGGAATTGAATATCGCGGACTCTATTTGGACTTGACTAACATTTTTTTAAAAAGGCCGCGAATGCCAGGAACCTG
CCAAGGAGAAGTCGTGCTACCGTTGTGGCCAAACCGGACATCTTTCTCGCGAATGCCCTCAGGGAGGCGACAGCA
ACTACAGCGGTGGTGGTTCCCAGGAGTGCTACAAGTGCGGACAGGTCGGCCACATCGCGCGGAACTGCTCCCAGG
GTGGTAACTACAGTGGTGGTTACAGCGCTGGAGGCGGCTACGGTGGTGGGTTCAGTGGTCCAGGTGGTGCCGGTG
GTCGCCAACAGACCTGCTACTCCTGCGGTGGCTTCGGCCACATGGCCCGTGACTGCACTCAGGGTCAGAAGTGCT
ACAACTGTCAGTTATTCCGGGTTTTCTCATTCGCCGGAATATGCTACTAACTTGTAAGTAGGCGGCGAAGTCGGC
CATGTCTCTCGCGACTGCCCCACTGAGGCCAAGGGTGAGCGCATGTGCTACAAGTGCAAGCAGCCCGGCCACGTT
CAGTCCGCTTGCCCTAACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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