© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO070G2_2|g9609.t1 |
| Gene name | |
| Location | scaffold_30:78627..79698 |
| Strand | + |
| Gene length (bp) | 1071 |
| Transcript length (bp) | 561 |
| Coding sequence length (bp) | 561 |
| Protein length (aa) | 187 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00098 | zf-CCHC | Zinc knuckle | 4.6E-05 | 10 | 26 |
| PF00098 | zf-CCHC | Zinc knuckle | 5.1E-06 | 31 | 46 |
| PF00098 | zf-CCHC | Zinc knuckle | 3.7E-08 | 53 | 69 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.3E-07 | 82 | 98 |
| PF00098 | zf-CCHC | Zinc knuckle | 3.0E-07 | 128 | 144 |
| PF00098 | zf-CCHC | Zinc knuckle | 2.6E-09 | 146 | 162 |
| PF00098 | zf-CCHC | Zinc knuckle | 8.6E-05 | 171 | 186 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 6.9E-02 | 11 | 26 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 1.2E+00 | 54 | 68 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 5.7E-01 | 83 | 97 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 2.6E-01 | 127 | 143 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 1.9E-02 | 148 | 162 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 3.3E+00 | 169 | 185 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0005488 | binding | No |
| GO:0043169 | cation binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, CCHC-type |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g9609.t1 MDFPPAGRGGCFNCGEASHQAKDCPKKGNPTCYNCNGQGHLSRECQEPAKEKSCYRCGQTGHLSRECPQGGDSNY SGGGSQECYKCGQVGHIARNCSQGGNYSGGYSAGGGYGGGFSGPGGAGGRQQTCYSCGGFGHMARDCTQGQKCYN CGEVGHVSRDCPTEAKGERMCYKCKQPGHVQSACPN* |
| Coding | >Pro_DTO070G2_2|g9609.t1 ATGGACTTCCCTCCTGCAGGACGTGGTGGCTGTTTCAACTGCGGCGAGGCCTCCCACCAGGCCAAGGACTGCCCT AAGAAGGGAAACCCTACCTGCTACAATTGCAACGGCCAAGGTCACTTGAGCCGCGAATGCCAGGAACCTGCCAAG GAGAAGTCGTGCTACCGTTGTGGCCAAACCGGACATCTTTCTCGCGAATGCCCTCAGGGAGGCGACAGCAACTAC AGCGGTGGTGGTTCCCAGGAGTGCTACAAGTGCGGACAGGTCGGCCACATCGCGCGGAACTGCTCCCAGGGTGGT AACTACAGTGGTGGTTACAGCGCTGGAGGCGGCTACGGTGGTGGGTTCAGTGGTCCAGGTGGTGCCGGTGGTCGC CAACAGACCTGCTACTCCTGCGGTGGCTTCGGCCACATGGCCCGTGACTGCACTCAGGGTCAGAAGTGCTACAAC TGCGGCGAAGTCGGCCATGTCTCTCGCGACTGCCCCACTGAGGCCAAGGGTGAGCGCATGTGCTACAAGTGCAAG CAGCCCGGCCACGTTCAGTCCGCTTGCCCTAACTAG |
| Transcript | >Pro_DTO070G2_2|g9609.t1 ATGGACTTCCCTCCTGCAGGACGTGGTGGCTGTTTCAACTGCGGCGAGGCCTCCCACCAGGCCAAGGACTGCCCT AAGAAGGGAAACCCTACCTGCTACAATTGCAACGGCCAAGGTCACTTGAGCCGCGAATGCCAGGAACCTGCCAAG GAGAAGTCGTGCTACCGTTGTGGCCAAACCGGACATCTTTCTCGCGAATGCCCTCAGGGAGGCGACAGCAACTAC AGCGGTGGTGGTTCCCAGGAGTGCTACAAGTGCGGACAGGTCGGCCACATCGCGCGGAACTGCTCCCAGGGTGGT AACTACAGTGGTGGTTACAGCGCTGGAGGCGGCTACGGTGGTGGGTTCAGTGGTCCAGGTGGTGCCGGTGGTCGC CAACAGACCTGCTACTCCTGCGGTGGCTTCGGCCACATGGCCCGTGACTGCACTCAGGGTCAGAAGTGCTACAAC TGCGGCGAAGTCGGCCATGTCTCTCGCGACTGCCCCACTGAGGCCAAGGGTGAGCGCATGTGCTACAAGTGCAAG CAGCCCGGCCACGTTCAGTCCGCTTGCCCTAACTAG |
| Gene | >Pro_DTO070G2_2|g9609.t1 ATGGACTTCCCTCCTGCAGGACGTGGTGGCTGTTTCAACTGTAAGTTCTTTTTTCCCTTCTACTGCAACCTGGAC TGGGAGAAATAAGCACCGGCTTGGTCAAATCCTGTGAATACGTCATATTCATTCGGAGAGCTTGTGGTACTCGAA TTGGATCCGGGGCTCTATTGCGACATCTATTGCGCAAGCTGATATTTACTAACTCTCTTCTTTTATAGGCGGCGA GGCCTCCCACCAGGTAATTACAACCTTTGCCCGATTTCCTCTTGAAAACTTGATTTAAAAAAGGAGACTCGAAGC TTATCTGCTCTTTCTAGGCCAAGGACTGCCCTAAGAAGGGAAACCCTACCTGGTAATTTCTCTTTCCCTTTGATC TGTCAATTCAAAAAGCTAACCCAGTCCTCCAATAGCTACAATTGCAACGGTACGCTCACTTCAAAATCGTCCATT GGATCTATGGACTGGTTATTAGAACGTTGCTAATCAATTCAATCACAATTTCAGGCCAAGGTCACTTGAGTAAGT TGGAATTGAATATCGCGGACTCTATTTGGACTTGACTAACATTTTTTTAAAAAGGCCGCGAATGCCAGGAACCTG CCAAGGAGAAGTCGTGCTACCGTTGTGGCCAAACCGGACATCTTTCTCGCGAATGCCCTCAGGGAGGCGACAGCA ACTACAGCGGTGGTGGTTCCCAGGAGTGCTACAAGTGCGGACAGGTCGGCCACATCGCGCGGAACTGCTCCCAGG GTGGTAACTACAGTGGTGGTTACAGCGCTGGAGGCGGCTACGGTGGTGGGTTCAGTGGTCCAGGTGGTGCCGGTG GTCGCCAACAGACCTGCTACTCCTGCGGTGGCTTCGGCCACATGGCCCGTGACTGCACTCAGGGTCAGAAGTGCT ACAACTGTCAGTTATTCCGGGTTTTCTCATTCGCCGGAATATGCTACTAACTTGTAAGTAGGCGGCGAAGTCGGC CATGTCTCTCGCGACTGCCCCACTGAGGCCAAGGGTGAGCGCATGTGCTACAAGTGCAAGCAGCCCGGCCACGTT CAGTCCGCTTGCCCTAACTAG |