© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g9442.t1 |
| Gene name | |
| Location | scaffold_28:48583..49668 |
| Strand | - |
| Gene length (bp) | 1085 |
| Transcript length (bp) | 1026 |
| Coding sequence length (bp) | 1026 |
| Protein length (aa) | 342 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02265 | S1-P1_nuclease | S1/P1 Nuclease | 6.8E-69 | 21 | 284 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004519 | endonuclease activity | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0006308 | DNA catabolic process | Yes |
| GO:0004518 | nuclease activity | No |
| GO:0008150 | biological_process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:1901361 | organic cyclic compound catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0046700 | heterocycle catabolic process | No |
| GO:0044270 | cellular nitrogen compound catabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0019439 | aromatic compound catabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0034655 | nucleobase-containing compound catabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0005488 | binding | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g9442.t1 MVSLFRIAFVTFGVIHGANAWGVLGHATVAYVAQHYISSEAASWAQEILNDTSSSYLANIASWADQYRLKDDGKW SAPLHYIDAMDDPPTSCNVDYERDCGAEGCSISAIANYTQRAGDSKLTTANTAEALRFLVHFLGDLTQPLHDENY EVGGNGISVTFNNYSDNLHSDWDTYMPVQLIGGSSLADAQGWADSLVDEITSGTYKKQAASWIKGDTISDTITTA TRWASDANSFVCTVVMPDGAAALQTGDLYPTYYNSAIGTIELQIAKGGYRLANWLNMIYKQNVTAKNTPGKFGKG HRQPEFVREPHHEPNKMSRANLARAAMGGSCCKSEGREHSH* |
| Coding | >Pro_DTO070G2_2|g9442.t1 ATGGTGTCTCTATTCAGGATTGCTTTCGTCACCTTCGGGGTGATTCATGGCGCAAATGCGTGGGGCGTACTAGGC CACGCGACTGTTGCCTATGTGGCACAACATTACATTTCTTCTGAAGCCGCATCATGGGCACAAGAAATTCTCAAT GATACTTCCAGCTCATACCTAGCAAACATTGCTTCCTGGGCAGATCAATACCGCCTCAAAGATGACGGCAAATGG TCAGCCCCTTTGCACTACATTGATGCCATGGATGACCCGCCAACAAGCTGCAACGTGGACTACGAGCGCGACTGT GGAGCTGAAGGCTGCTCGATCTCTGCCATTGCCAACTATACCCAGCGTGCAGGGGATAGCAAACTCACTACTGCC AATACCGCCGAAGCTCTCAGATTCCTCGTGCACTTCCTTGGCGATCTCACGCAGCCATTGCACGACGAGAACTAC GAGGTTGGCGGAAATGGCATCAGTGTCACTTTCAACAACTACTCTGACAACCTTCATTCGGACTGGGATACATAC ATGCCTGTACAGCTGATTGGCGGTAGTTCGCTCGCCGATGCGCAGGGATGGGCCGACAGCCTGGTCGATGAAATC ACTTCCGGCACCTACAAAAAGCAAGCAGCGAGCTGGATCAAAGGCGATACCATCAGTGATACTATCACCACTGCC ACTCGATGGGCATCGGATGCCAATTCTTTTGTCTGTACTGTTGTCATGCCGGATGGAGCCGCTGCCTTGCAGACT GGCGATCTATACCCGACATACTACAACTCCGCCATCGGCACGATCGAGCTCCAGATTGCTAAAGGCGGCTACCGA CTAGCCAATTGGCTCAACATGATTTACAAGCAGAATGTTACTGCTAAGAATACGCCAGGGAAATTCGGCAAAGGG CACCGACAGCCTGAATTTGTCCGCGAGCCTCACCATGAGCCTAATAAGATGAGCCGCGCAAATCTAGCTAGAGCT GCTATGGGAGGATCTTGCTGCAAATCAGAAGGACGTGAGCATAGCCATTGA |
| Transcript | >Pro_DTO070G2_2|g9442.t1 ATGGTGTCTCTATTCAGGATTGCTTTCGTCACCTTCGGGGTGATTCATGGCGCAAATGCGTGGGGCGTACTAGGC CACGCGACTGTTGCCTATGTGGCACAACATTACATTTCTTCTGAAGCCGCATCATGGGCACAAGAAATTCTCAAT GATACTTCCAGCTCATACCTAGCAAACATTGCTTCCTGGGCAGATCAATACCGCCTCAAAGATGACGGCAAATGG TCAGCCCCTTTGCACTACATTGATGCCATGGATGACCCGCCAACAAGCTGCAACGTGGACTACGAGCGCGACTGT GGAGCTGAAGGCTGCTCGATCTCTGCCATTGCCAACTATACCCAGCGTGCAGGGGATAGCAAACTCACTACTGCC AATACCGCCGAAGCTCTCAGATTCCTCGTGCACTTCCTTGGCGATCTCACGCAGCCATTGCACGACGAGAACTAC GAGGTTGGCGGAAATGGCATCAGTGTCACTTTCAACAACTACTCTGACAACCTTCATTCGGACTGGGATACATAC ATGCCTGTACAGCTGATTGGCGGTAGTTCGCTCGCCGATGCGCAGGGATGGGCCGACAGCCTGGTCGATGAAATC ACTTCCGGCACCTACAAAAAGCAAGCAGCGAGCTGGATCAAAGGCGATACCATCAGTGATACTATCACCACTGCC ACTCGATGGGCATCGGATGCCAATTCTTTTGTCTGTACTGTTGTCATGCCGGATGGAGCCGCTGCCTTGCAGACT GGCGATCTATACCCGACATACTACAACTCCGCCATCGGCACGATCGAGCTCCAGATTGCTAAAGGCGGCTACCGA CTAGCCAATTGGCTCAACATGATTTACAAGCAGAATGTTACTGCTAAGAATACGCCAGGGAAATTCGGCAAAGGG CACCGACAGCCTGAATTTGTCCGCGAGCCTCACCATGAGCCTAATAAGATGAGCCGCGCAAATCTAGCTAGAGCT GCTATGGGAGGATCTTGCTGCAAATCAGAAGGACGTGAGCATAGCCATTGA |
| Gene | >Pro_DTO070G2_2|g9442.t1 ATGGTGTCTCTATTCAGGATTGCTTTCGTCACCTTCGGGGTGATTCATGGCGCAAATGCGTGGGGCGTACTAGGC CACGCGACTGTTGCCTATGTGGCACAACATTACATTTCTTCTGAAGCCGCATCATGGTAAGTCCTCCGAAAGAGC TTCCAGATAAAGACAGTATCCAATGCTAATCTATTTGAAGGGCACAAGAAATTCTCAATGATACTTCCAGCTCAT ACCTAGCAAACATTGCTTCCTGGGCAGATCAATACCGCCTCAAAGATGACGGCAAATGGTCAGCCCCTTTGCACT ACATTGATGCCATGGATGACCCGCCAACAAGCTGCAACGTGGACTACGAGCGCGACTGTGGAGCTGAAGGCTGCT CGATCTCTGCCATTGCCAACTATACCCAGCGTGCAGGGGATAGCAAACTCACTACTGCCAATACCGCCGAAGCTC TCAGATTCCTCGTGCACTTCCTTGGCGATCTCACGCAGCCATTGCACGACGAGAACTACGAGGTTGGCGGAAATG GCATCAGTGTCACTTTCAACAACTACTCTGACAACCTTCATTCGGACTGGGATACATACATGCCTGTACAGCTGA TTGGCGGTAGTTCGCTCGCCGATGCGCAGGGATGGGCCGACAGCCTGGTCGATGAAATCACTTCCGGCACCTACA AAAAGCAAGCAGCGAGCTGGATCAAAGGCGATACCATCAGTGATACTATCACCACTGCCACTCGATGGGCATCGG ATGCCAATTCTTTTGTCTGTACTGTTGTCATGCCGGATGGAGCCGCTGCCTTGCAGACTGGCGATCTATACCCGA CATACTACAACTCCGCCATCGGCACGATCGAGCTCCAGATTGCTAAAGGCGGCTACCGACTAGCCAATTGGCTCA ACATGATTTACAAGCAGAATGTTACTGCTAAGAATACGCCAGGGAAATTCGGCAAAGGGCACCGACAGCCTGAAT TTGTCCGCGAGCCTCACCATGAGCCTAATAAGATGAGCCGCGCAAATCTAGCTAGAGCTGCTATGGGAGGATCTT GCTGCAAATCAGAAGGACGTGAGCATAGCCATTGA |