© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO070G2_2|g9220.t1 |
| Gene name | |
| Location | scaffold_25:95977..97356 |
| Strand | - |
| Gene length (bp) | 1379 |
| Transcript length (bp) | 1263 |
| Coding sequence length (bp) | 1263 |
| Protein length (aa) | 421 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05007 | Mannosyl_trans | Mannosyltransferase (PIG-M) | 5.9E-75 | 139 | 404 |
| PF06728 | PIG-U | GPI transamidase subunit PIG-U | 2.7E-08 | 44 | 371 |
| PF09594 | GT87 | Glycosyltransferase family 87 | 7.4E-07 | 64 | 303 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016758 | hexosyltransferase activity | Yes |
| GO:0006506 | GPI anchor biosynthetic process | Yes |
| GO:0004376 | glycolipid mannosyltransferase activity | Yes |
| GO:0051751 | alpha-1,4-mannosyltransferase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0000030 | mannosyltransferase activity | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006505 | GPI anchor metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0006650 | glycerophospholipid metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0036211 | protein modification process | No |
| GO:0046474 | glycerophospholipid biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008654 | phospholipid biosynthetic process | No |
| GO:1903509 | liposaccharide metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0009247 | glycolipid biosynthetic process | No |
| GO:0045017 | glycerolipid biosynthetic process | No |
| GO:0016757 | glycosyltransferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0046467 | membrane lipid biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0019637 | organophosphate metabolic process | No |
| GO:0046488 | phosphatidylinositol metabolic process | No |
| GO:0006643 | membrane lipid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0046486 | glycerolipid metabolic process | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0006661 | phosphatidylinositol biosynthetic process | No |
| GO:0006497 | protein lipidation | No |
| GO:0006664 | glycolipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0090407 | organophosphate biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 33 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 27 | 17 |
| 2 | 170 | 192 | 22 |
| 3 | 222 | 239 | 17 |
| 4 | 284 | 303 | 19 |
| 5 | 329 | 346 | 17 |
| 6 | 351 | 368 | 17 |
| 7 | 383 | 405 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g9220.t1 MAIFDSPARVFLAATALRLIFLVYGGWQDAHSTVKYTDIDYMVFTDAARYVAKGESPYTRDTYRYTPLLAWMLLP TAWEGATPWSTLTFAFGKALFALSDVLAGWLVVQLLVRCYQFPVERALRYVSAVWLWNPMVANISTRGSSEGLLG VLVAALLWATLTKKPVLAGLILGLAVHFKIYPFIYGVSILWWWDAERDGSVTTGSGLLSKALGFITPSRVKFTVA ALASFVALNLVMYLQHGQPFLHHTFFHHLTRIDHRHNFSPYSTLLYLSAAGGAETRFEALAFLPQLILVVVALPL VLAKKSLTTTMLAQTFTFVTFNKVCTSQYFLWYLILLPFYLPSSSLIRKPALGISAAILWIAGQALWLHQGYNLE FLGLSSFVPGLFLAGLFFFAVNVWILGIIVRDGGDGAGEITTALK* |
| Coding | >Pro_DTO070G2_2|g9220.t1 ATGGCTATCTTCGACTCTCCAGCGCGAGTCTTTCTCGCCGCAACAGCTCTCCGCCTCATTTTCCTCGTCTATGGA GGCTGGCAGGATGCGCACTCCACCGTGAAATACACCGACATCGATTACATGGTGTTCACTGATGCTGCGCGCTAT GTTGCAAAGGGCGAGTCGCCATACACTCGGGATACTTACCGCTACACGCCGCTCTTGGCATGGATGCTTCTCCCT ACTGCGTGGGAAGGTGCCACGCCTTGGTCAACACTGACTTTCGCCTTTGGAAAGGCGCTTTTTGCATTGTCTGAC GTCCTTGCTGGATGGCTCGTTGTCCAGCTGCTTGTCCGATGCTATCAATTTCCCGTCGAGCGCGCGCTGCGGTAC GTTTCGGCTGTTTGGCTGTGGAATCCCATGGTTGCCAATATCAGTACCCGTGGTAGTTCGGAGGGACTGCTCGGT GTGCTTGTTGCGGCGCTCCTCTGGGCAACTTTGACGAAGAAGCCTGTCCTTGCTGGGCTTATCCTGGGTCTTGCT GTGCATTTCAAAATTTACCCGTTCATCTATGGTGTCTCCATTCTCTGGTGGTGGGATGCTGAGCGCGATGGGTCT GTAACGACTGGCTCGGGTCTGCTGTCAAAGGCTTTGGGGTTCATTACTCCGTCCCGGGTGAAGTTTACAGTTGCA GCACTGGCCAGTTTCGTGGCATTGAATCTCGTCATGTACCTCCAGCACGGTCAACCGTTCCTCCATCACACTTTC TTCCACCATCTTACTCGTATCGATCACCGCCACAATTTCTCTCCCTATAGTACACTGCTCTATCTTTCTGCTGCG GGTGGGGCCGAAACTCGCTTTGAGGCACTGGCCTTCCTTCCGCAGCTAATCCTTGTGGTTGTTGCTTTGCCTCTG GTCCTGGCAAAGAAGAGCTTGACTACTACGATGCTTGCGCAGACTTTTACTTTTGTCACTTTCAACAAAGTTTGT ACCAGTCAGTATTTCCTCTGGTACCTCATCCTGCTTCCATTTTACCTACCATCTTCCTCGCTCATCCGTAAACCG GCTCTGGGCATATCAGCAGCCATACTATGGATTGCCGGACAGGCCCTCTGGCTGCACCAAGGTTACAATCTCGAA TTCCTGGGACTATCATCCTTCGTACCTGGGCTGTTTCTCGCAGGGCTCTTCTTCTTTGCCGTGAACGTCTGGATC CTAGGTATCATCGTTCGGGATGGAGGAGACGGTGCTGGCGAGATTACAACAGCACTAAAATGA |
| Transcript | >Pro_DTO070G2_2|g9220.t1 ATGGCTATCTTCGACTCTCCAGCGCGAGTCTTTCTCGCCGCAACAGCTCTCCGCCTCATTTTCCTCGTCTATGGA GGCTGGCAGGATGCGCACTCCACCGTGAAATACACCGACATCGATTACATGGTGTTCACTGATGCTGCGCGCTAT GTTGCAAAGGGCGAGTCGCCATACACTCGGGATACTTACCGCTACACGCCGCTCTTGGCATGGATGCTTCTCCCT ACTGCGTGGGAAGGTGCCACGCCTTGGTCAACACTGACTTTCGCCTTTGGAAAGGCGCTTTTTGCATTGTCTGAC GTCCTTGCTGGATGGCTCGTTGTCCAGCTGCTTGTCCGATGCTATCAATTTCCCGTCGAGCGCGCGCTGCGGTAC GTTTCGGCTGTTTGGCTGTGGAATCCCATGGTTGCCAATATCAGTACCCGTGGTAGTTCGGAGGGACTGCTCGGT GTGCTTGTTGCGGCGCTCCTCTGGGCAACTTTGACGAAGAAGCCTGTCCTTGCTGGGCTTATCCTGGGTCTTGCT GTGCATTTCAAAATTTACCCGTTCATCTATGGTGTCTCCATTCTCTGGTGGTGGGATGCTGAGCGCGATGGGTCT GTAACGACTGGCTCGGGTCTGCTGTCAAAGGCTTTGGGGTTCATTACTCCGTCCCGGGTGAAGTTTACAGTTGCA GCACTGGCCAGTTTCGTGGCATTGAATCTCGTCATGTACCTCCAGCACGGTCAACCGTTCCTCCATCACACTTTC TTCCACCATCTTACTCGTATCGATCACCGCCACAATTTCTCTCCCTATAGTACACTGCTCTATCTTTCTGCTGCG GGTGGGGCCGAAACTCGCTTTGAGGCACTGGCCTTCCTTCCGCAGCTAATCCTTGTGGTTGTTGCTTTGCCTCTG GTCCTGGCAAAGAAGAGCTTGACTACTACGATGCTTGCGCAGACTTTTACTTTTGTCACTTTCAACAAAGTTTGT ACCAGTCAGTATTTCCTCTGGTACCTCATCCTGCTTCCATTTTACCTACCATCTTCCTCGCTCATCCGTAAACCG GCTCTGGGCATATCAGCAGCCATACTATGGATTGCCGGACAGGCCCTCTGGCTGCACCAAGGTTACAATCTCGAA TTCCTGGGACTATCATCCTTCGTACCTGGGCTGTTTCTCGCAGGGCTCTTCTTCTTTGCCGTGAACGTCTGGATC CTAGGTATCATCGTTCGGGATGGAGGAGACGGTGCTGGCGAGATTACAACAGCACTAAAATGA |
| Gene | >Pro_DTO070G2_2|g9220.t1 ATGGCTATCTTCGACTCTCCAGCGCGAGTCTTTCTCGCCGCAACAGCTCTCCGCCTCATTTTCCTCGTCTATGGA GGCTGGCAGGATGCGCACTCCACCGTGAAATACACCGACATCGATTACATGGTGTTCACTGATGCTGCGCGCTAT GTTGCAAAGGGCGAGTCGCCATACACTCGGGATACTTACCGCTACACGCCGCTCTTGGCATGGATGCTTCTCCCT ACTGCGTGGGAAGGTGCCACGCCTTGGTCAACACTGACTTTCGCCTTTGGAAAGGCGCTTTTTGCATTGTCTGAC GTCCTTGCTGGATGGCTCGTTGTCCAGCTGCTTGTCCGATGCTATCAATTTCCCGTCGAGCGCGCGCTGCGGTAC GTTTCGGCTGTTTGGCTGTGGAATCCCATGGTTGCCAATATCAGTACCCGTGGTAGTTCGGAGGGACTGCTCGGT GTGCTTGTTGCGGCGCTCCTCTGGGCAACTTTGACGAAGAAGCCTGTCCTTGCTGGGCTTATCCTGGGTCTTGCT GTGCATTTCAAAATTTACCCGTTCATCTATGGTGTCTCCATTCTCTGGTGGTGGGATGCTGAGCGCGATGGGTCT GTAACGACTGGCTCGGGTCTGCTGTCAAAGGCTTTGGGGTTCATTACTCCGTCCCGGGTGAAGTTTACAGTTGCA GCACTGGCCAGTTTCGTGGCATTGAATCTCGTCATGTACCTCCAGCACGGTCAACCGTTCCTCCATCACACTTTC TTCCACCATCTTACTCGTATCGATCACCGCCACAATTTCTCTCCCTATAGTACACTGCTCTATCTTTCTGCTGCG GGTGGGGCCGAAACTCGCTTTGAGGCACTGGCCTTCCTTCCGCAGCTAATCCTTGTGGTTGTTGCTTTGCCTCTG GTCCTGGCAAAGAAGAGCTTGACTACTACGATGCTTGCGCAGACTTTTACTTTTGTCACTTTCAACAAAGTTTGT ACCAGTCAGGTATGTGACTCCATCCGAAAATTGTCATACTCGCAGCTAATCTGTTTAGTATTTCCTCTGGTACCT CATCCTGCTTCCATTTTACCTACCATCTTCCTCGCTCATCCGTAAACCGGCTCTGGGCATATCAGCAGCCATACT ATGGATTGCCGGACAGGTATGTATTGTCTAGTGATTTTCTGATACCAGAATCTTCAGGGCTTCAACTCTGACCAA CTATATAGGCCCTCTGGCTGCACCAAGGTTACAATCTCGAATTCCTGGGACTATCATCCTTCGTACCTGGGCTGT TTCTCGCAGGGCTCTTCTTCTTTGCCGTGAACGTCTGGATCCTAGGTATCATCGTTCGGGATGGAGGAGACGGTG CTGGCGAGATTACAACAGCACTAAAATGA |