© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g9063.t1 |
| Gene name | |
| Location | scaffold_23:246201..248664 |
| Strand | + |
| Gene length (bp) | 2463 |
| Transcript length (bp) | 2343 |
| Coding sequence length (bp) | 2343 |
| Protein length (aa) | 781 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 1.3E-08 | 340 | 404 |
| PF13639 | zf-RING_2 | Ring finger domain | 2.4E-08 | 377 | 404 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.7E-06 | 342 | 403 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043169 | cation binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 22 | 17 |
| 2 | 38 | 60 | 22 |
| 3 | 99 | 121 | 22 |
| 4 | 142 | 164 | 22 |
| 5 | 174 | 196 | 22 |
| 6 | 276 | 298 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g9063.t1 MRLAAYAGASVVLAAGVFLKALHQRSNFYSACVYLSQSSANLMILTNLCLLVTGFILFWLQRLLYGRLRPIETEQ LYERAWFAVTETCLAMTIFRGELGGWFLVMFISLLVGKVWGWIGEGRVEFLEQQPPANPRLFHTRLALSLVLTVS FNFFMLRYCVHTVITQARPDMMVMFGFEFAILLILSTSTLLRYVIALTEISITRQQIKAKIQERRDEIRVARVEA IREHARAGATSPPDNLPDENDVNELEIDVPGWEEKGRWVFYLDLLTDLLKLLIYLSFFGILLTFYGLPIHILRDV VVTIRSFARRIMDFMRYRNATRDMHQRYPDATAEEISREDVCIICREEMIPVRPAQPGADAAGEPAPQRVPDRLR PKKLPCGHILHFSCLRSWLERQQNCPTCRRPVIMPQRTQGAAGVADNNARGGQNGGIRPGQQGADAQPRARVYQF GPFRIGFGAVRGDLFNNLHQGNAPRANPPANAPGGQIGFGFGFGRRPQAPTPAPQAAAGGSIAAEINDQLLHIEH RLNQEIATLRAATEHLNHVRQLRGELERLLAQARAVNRPAAGQPGAGQPAPPPNIAPASSLFTTSHQYGANPGTD VLNPGDPRLPEGLTLPPGWTLLPLQRMDNSAGGVEQTVQPTPTTTVTSPAAPAVASAVTSQVSPFPVPAQDQTSG SVGINAHGTVNAETHPVNGAPSPPVLQPTPTVPSVEHRAESPSQEWTDVAPRGSFDARPASIPTTWGTNEESASS ASAQAETQPESTSHGKRRTASVEETPDEEA* |
| Coding | >Pro_DTO070G2_2|g9063.t1 ATGAGACTGGCCGCTTATGCTGGGGCCTCAGTGGTCCTAGCCGCTGGTGTGTTTCTAAAAGCTCTCCATCAGAGG TCCAATTTCTATTCGGCATGCGTCTATCTCTCTCAGAGTAGTGCGAATCTTATGATCCTCACGAATTTATGCCTT CTCGTCACCGGCTTTATCTTATTCTGGCTCCAGCGACTTCTCTACGGACGCTTGCGACCAATCGAGACCGAACAA CTATACGAGCGGGCCTGGTTCGCCGTCACAGAGACATGTCTGGCTATGACCATCTTCCGAGGCGAACTTGGAGGC TGGTTTCTGGTCATGTTCATTTCGCTGCTGGTCGGTAAGGTCTGGGGATGGATTGGCGAAGGCCGCGTTGAGTTC CTAGAGCAACAGCCGCCGGCTAATCCCCGGTTGTTCCATACTCGACTGGCGCTATCTCTCGTGCTGACGGTGTCG TTCAACTTCTTTATGTTACGGTACTGTGTGCACACTGTAATCACGCAGGCACGGCCGGATATGATGGTGATGTTT GGATTCGAATTCGCCATCTTGCTAATCCTCTCGACCTCCACCCTCCTGCGATACGTTATCGCGTTAACCGAAATA TCCATAACCCGCCAGCAAATAAAGGCCAAGATCCAGGAACGTAGGGATGAGATCCGTGTTGCGCGAGTCGAAGCA ATTCGAGAACATGCCCGCGCGGGAGCTACCTCCCCTCCTGACAATCTGCCCGACGAAAACGATGTCAATGAGTTG GAGATCGACGTGCCCGGGTGGGAGGAGAAGGGTCGTTGGGTCTTCTACTTGGATCTTTTGACCGATTTGTTGAAA CTCCTGATTTATTTGAGCTTCTTTGGCATTCTGCTCACTTTCTACGGCCTCCCCATCCACATTCTGCGGGACGTT GTTGTGACCATCCGCTCATTTGCGCGTCGAATTATGGACTTCATGCGTTACAGAAACGCGACAAGGGATATGCAT CAGAGGTATCCGGATGCAACAGCGGAGGAAATCTCCCGGGAAGATGTCTGTATCATCTGCCGTGAAGAGATGATT CCGGTTCGGCCGGCGCAACCGGGGGCTGATGCGGCTGGAGAGCCTGCACCACAGCGTGTTCCTGACCGTCTACGC CCAAAGAAGCTCCCATGTGGCCATATCCTGCACTTTTCGTGTCTCCGAAGCTGGCTTGAGAGGCAACAAAATTGC CCGACATGCCGACGTCCTGTTATAATGCCACAGCGAACTCAGGGAGCTGCCGGGGTTGCAGACAACAACGCACGC GGAGGTCAGAATGGTGGTATTCGGCCAGGCCAACAAGGTGCGGATGCACAACCACGTGCTCGGGTCTATCAGTTT GGACCCTTCCGCATCGGCTTTGGAGCTGTGCGTGGAGATTTATTCAACAATCTTCACCAAGGTAATGCGCCGCGG GCAAACCCCCCTGCGAATGCCCCTGGAGGACAAATCGGGTTTGGATTTGGATTCGGGCGCCGTCCCCAAGCCCCC ACCCCCGCCCCACAAGCTGCGGCTGGGGGATCTATCGCTGCTGAAATCAATGATCAGTTGCTGCACATCGAGCAC CGGCTGAACCAAGAGATTGCCACCCTTCGAGCTGCTACAGAGCATCTAAATCACGTGCGCCAGCTTCGGGGGGAA CTAGAGCGGTTGCTTGCTCAAGCAAGGGCTGTTAACCGACCAGCTGCCGGTCAACCTGGTGCCGGCCAACCGGCT CCGCCTCCAAACATAGCCCCGGCATCTTCTTTATTCACAACGAGCCACCAGTATGGCGCAAACCCGGGCACTGAT GTTCTAAACCCTGGAGACCCTCGTCTACCGGAAGGGCTCACTCTTCCCCCTGGTTGGACCCTCCTTCCTCTCCAG CGTATGGATAATAGTGCCGGCGGTGTGGAACAAACAGTACAACCTACTCCTACCACTACAGTGACATCCCCGGCT GCTCCAGCCGTGGCTAGCGCTGTAACTTCTCAGGTCTCTCCATTCCCCGTTCCTGCTCAGGATCAAACGAGCGGG AGCGTCGGGATAAATGCGCACGGCACCGTCAATGCTGAAACCCATCCCGTAAATGGGGCCCCTAGTCCACCGGTA CTGCAACCAACACCCACTGTCCCCTCAGTGGAACATCGTGCAGAATCCCCGTCTCAGGAATGGACCGACGTTGCT CCTAGAGGGTCCTTTGACGCCAGGCCAGCTTCTATTCCTACTACATGGGGTACCAATGAGGAATCTGCAAGTAGT GCTTCTGCTCAAGCCGAGACTCAACCCGAGTCCACATCCCACGGCAAGCGCCGGACCGCATCAGTTGAGGAAACT CCTGATGAAGAAGCTTGA |
| Transcript | >Pro_DTO070G2_2|g9063.t1 ATGAGACTGGCCGCTTATGCTGGGGCCTCAGTGGTCCTAGCCGCTGGTGTGTTTCTAAAAGCTCTCCATCAGAGG TCCAATTTCTATTCGGCATGCGTCTATCTCTCTCAGAGTAGTGCGAATCTTATGATCCTCACGAATTTATGCCTT CTCGTCACCGGCTTTATCTTATTCTGGCTCCAGCGACTTCTCTACGGACGCTTGCGACCAATCGAGACCGAACAA CTATACGAGCGGGCCTGGTTCGCCGTCACAGAGACATGTCTGGCTATGACCATCTTCCGAGGCGAACTTGGAGGC TGGTTTCTGGTCATGTTCATTTCGCTGCTGGTCGGTAAGGTCTGGGGATGGATTGGCGAAGGCCGCGTTGAGTTC CTAGAGCAACAGCCGCCGGCTAATCCCCGGTTGTTCCATACTCGACTGGCGCTATCTCTCGTGCTGACGGTGTCG TTCAACTTCTTTATGTTACGGTACTGTGTGCACACTGTAATCACGCAGGCACGGCCGGATATGATGGTGATGTTT GGATTCGAATTCGCCATCTTGCTAATCCTCTCGACCTCCACCCTCCTGCGATACGTTATCGCGTTAACCGAAATA TCCATAACCCGCCAGCAAATAAAGGCCAAGATCCAGGAACGTAGGGATGAGATCCGTGTTGCGCGAGTCGAAGCA ATTCGAGAACATGCCCGCGCGGGAGCTACCTCCCCTCCTGACAATCTGCCCGACGAAAACGATGTCAATGAGTTG GAGATCGACGTGCCCGGGTGGGAGGAGAAGGGTCGTTGGGTCTTCTACTTGGATCTTTTGACCGATTTGTTGAAA CTCCTGATTTATTTGAGCTTCTTTGGCATTCTGCTCACTTTCTACGGCCTCCCCATCCACATTCTGCGGGACGTT GTTGTGACCATCCGCTCATTTGCGCGTCGAATTATGGACTTCATGCGTTACAGAAACGCGACAAGGGATATGCAT CAGAGGTATCCGGATGCAACAGCGGAGGAAATCTCCCGGGAAGATGTCTGTATCATCTGCCGTGAAGAGATGATT CCGGTTCGGCCGGCGCAACCGGGGGCTGATGCGGCTGGAGAGCCTGCACCACAGCGTGTTCCTGACCGTCTACGC CCAAAGAAGCTCCCATGTGGCCATATCCTGCACTTTTCGTGTCTCCGAAGCTGGCTTGAGAGGCAACAAAATTGC CCGACATGCCGACGTCCTGTTATAATGCCACAGCGAACTCAGGGAGCTGCCGGGGTTGCAGACAACAACGCACGC GGAGGTCAGAATGGTGGTATTCGGCCAGGCCAACAAGGTGCGGATGCACAACCACGTGCTCGGGTCTATCAGTTT GGACCCTTCCGCATCGGCTTTGGAGCTGTGCGTGGAGATTTATTCAACAATCTTCACCAAGGTAATGCGCCGCGG GCAAACCCCCCTGCGAATGCCCCTGGAGGACAAATCGGGTTTGGATTTGGATTCGGGCGCCGTCCCCAAGCCCCC ACCCCCGCCCCACAAGCTGCGGCTGGGGGATCTATCGCTGCTGAAATCAATGATCAGTTGCTGCACATCGAGCAC CGGCTGAACCAAGAGATTGCCACCCTTCGAGCTGCTACAGAGCATCTAAATCACGTGCGCCAGCTTCGGGGGGAA CTAGAGCGGTTGCTTGCTCAAGCAAGGGCTGTTAACCGACCAGCTGCCGGTCAACCTGGTGCCGGCCAACCGGCT CCGCCTCCAAACATAGCCCCGGCATCTTCTTTATTCACAACGAGCCACCAGTATGGCGCAAACCCGGGCACTGAT GTTCTAAACCCTGGAGACCCTCGTCTACCGGAAGGGCTCACTCTTCCCCCTGGTTGGACCCTCCTTCCTCTCCAG CGTATGGATAATAGTGCCGGCGGTGTGGAACAAACAGTACAACCTACTCCTACCACTACAGTGACATCCCCGGCT GCTCCAGCCGTGGCTAGCGCTGTAACTTCTCAGGTCTCTCCATTCCCCGTTCCTGCTCAGGATCAAACGAGCGGG AGCGTCGGGATAAATGCGCACGGCACCGTCAATGCTGAAACCCATCCCGTAAATGGGGCCCCTAGTCCACCGGTA CTGCAACCAACACCCACTGTCCCCTCAGTGGAACATCGTGCAGAATCCCCGTCTCAGGAATGGACCGACGTTGCT CCTAGAGGGTCCTTTGACGCCAGGCCAGCTTCTATTCCTACTACATGGGGTACCAATGAGGAATCTGCAAGTAGT GCTTCTGCTCAAGCCGAGACTCAACCCGAGTCCACATCCCACGGCAAGCGCCGGACCGCATCAGTTGAGGAAACT CCTGATGAAGAAGCTTGA |
| Gene | >Pro_DTO070G2_2|g9063.t1 ATGAGACTGGCCGCTTATGCTGGGGTAAGTACTGCAGCTGATGGGGAAGATAACCCGCTAACATTGGAACCCGTT CACAGGCCTCAGTGGTCCTAGCCGCTGGTGTGTTTCTAAAAGCTCTCCATCAGAGGTCCAATTTCTATTCGGCAT GCGTCTATCTCTCTCAGAGTAGTGCGAATCTTATGGTGAGTTGTCCAGTTTGGGTTATCGCGCTTGGCCATAGTC CCTAACCCATTACCACATCTCCAGATCCTCACGAATTTATGCCTTCTCGTCACCGGCTTTATCTTATTCTGGCTC CAGCGACTTCTCTACGGACGCTTGCGACCAATCGAGACCGAACAACTATACGAGCGGGCCTGGTTCGCCGTCACA GAGACATGTCTGGCTATGACCATCTTCCGAGGCGAACTTGGAGGCTGGTTTCTGGTCATGTTCATTTCGCTGCTG GTCGGTAAGGTCTGGGGATGGATTGGCGAAGGCCGCGTTGAGTTCCTAGAGCAACAGCCGCCGGCTAATCCCCGG TTGTTCCATACTCGACTGGCGCTATCTCTCGTGCTGACGGTGTCGTTCAACTTCTTTATGTTACGGTACTGTGTG CACACTGTAATCACGCAGGCACGGCCGGATATGATGGTGATGTTTGGATTCGAATTCGCCATCTTGCTAATCCTC TCGACCTCCACCCTCCTGCGATACGTTATCGCGTTAACCGAAATATCCATAACCCGCCAGCAAATAAAGGCCAAG ATCCAGGAACGTAGGGATGAGATCCGTGTTGCGCGAGTCGAAGCAATTCGAGAACATGCCCGCGCGGGAGCTACC TCCCCTCCTGACAATCTGCCCGACGAAAACGATGTCAATGAGTTGGAGATCGACGTGCCCGGGTGGGAGGAGAAG GGTCGTTGGGTCTTCTACTTGGATCTTTTGACCGATTTGTTGAAACTCCTGATTTATTTGAGCTTCTTTGGCATT CTGCTCACTTTCTACGGCCTCCCCATCCACATTCTGCGGGACGTTGTTGTGACCATCCGCTCATTTGCGCGTCGA ATTATGGACTTCATGCGTTACAGAAACGCGACAAGGGATATGCATCAGAGGTATCCGGATGCAACAGCGGAGGAA ATCTCCCGGGAAGATGTCTGTATCATCTGCCGTGAAGAGATGATTCCGGTTCGGCCGGCGCAACCGGGGGCTGAT GCGGCTGGAGAGCCTGCACCACAGCGTGTTCCTGACCGTCTACGCCCAAAGAAGCTCCCATGTGGCCATATCCTG CACTTTTCGTGTCTCCGAAGCTGGCTTGAGAGGCAACAAAATTGCCCGACATGCCGACGTCCTGTTATAATGCCA CAGCGAACTCAGGGAGCTGCCGGGGTTGCAGACAACAACGCACGCGGAGGTCAGAATGGTGGTATTCGGCCAGGC CAACAAGGTGCGGATGCACAACCACGTGCTCGGGTCTATCAGTTTGGACCCTTCCGCATCGGCTTTGGAGCTGTG CGTGGAGATTTATTCAACAATCTTCACCAAGGTAATGCGCCGCGGGCAAACCCCCCTGCGAATGCCCCTGGAGGA CAAATCGGGTTTGGATTTGGATTCGGGCGCCGTCCCCAAGCCCCCACCCCCGCCCCACAAGCTGCGGCTGGGGGA TCTATCGCTGCTGAAATCAATGATCAGTTGCTGCACATCGAGCACCGGCTGAACCAAGAGATTGCCACCCTTCGA GCTGCTACAGAGCATCTAAATCACGTGCGCCAGCTTCGGGGGGAACTAGAGCGGTTGCTTGCTCAAGCAAGGGCT GTTAACCGACCAGCTGCCGGTCAACCTGGTGCCGGCCAACCGGCTCCGCCTCCAAACATAGCCCCGGCATCTTCT TTATTCACAACGAGCCACCAGTATGGCGCAAACCCGGGCACTGATGTTCTAAACCCTGGAGACCCTCGTCTACCG GAAGGGCTCACTCTTCCCCCTGGTTGGACCCTCCTTCCTCTCCAGCGTATGGATAATAGTGCCGGCGGTGTGGAA CAAACAGTACAACCTACTCCTACCACTACAGTGACATCCCCGGCTGCTCCAGCCGTGGCTAGCGCTGTAACTTCT CAGGTCTCTCCATTCCCCGTTCCTGCTCAGGATCAAACGAGCGGGAGCGTCGGGATAAATGCGCACGGCACCGTC AATGCTGAAACCCATCCCGTAAATGGGGCCCCTAGTCCACCGGTACTGCAACCAACACCCACTGTCCCCTCAGTG GAACATCGTGCAGAATCCCCGTCTCAGGAATGGACCGACGTTGCTCCTAGAGGGTCCTTTGACGCCAGGCCAGCT TCTATTCCTACTACATGGGGTACCAATGAGGAATCTGCAAGTAGTGCTTCTGCTCAAGCCGAGACTCAACCCGAG TCCACATCCCACGGCAAGCGCCGGACCGCATCAGTTGAGGAAACTCCTGATGAAGAAGCTTGA |