© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g8578.t1 |
| Gene name | |
| Location | scaffold_19:304025..305098 |
| Strand | + |
| Gene length (bp) | 1073 |
| Transcript length (bp) | 759 |
| Coding sequence length (bp) | 759 |
| Protein length (aa) | 253 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 3.3E-19 | 184 | 244 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 52 | 74 | 22 |
| 3 | 126 | 148 | 22 |
| 4 | 163 | 185 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g8578.t1 MICSAKRKVLDGLNKRYIYGRVPLLHTIIFLVEMAVAARLATKFNTYYAERPVLTTMVTNAVLGGVADTVAQLIT AFRTRRSQTSGDDFLSIEIPDFDKHKPSAVGESGYVRSSLPPFDFERLTRFMAYGFFMAPLQFQWFGFLSRAFPL TKKNPTAPAFKRVAFDQLIFAPFGLVVFFTYMTIAEGGGRRALTNKFRDVYLPTLKANFVLWPAVQILNFRVVPI QFQIPFVSTVGIAWTAYLSLTNSSEES* |
| Coding | >Pro_DTO070G2_2|g8578.t1 ATGATCTGCTCTGCGAAGCGGAAAGTCCTGGATGGACTGAATAAGAGATATATTTACGGTCGCGTGCCTTTATTG CACACGATAATTTTCCTCGTCGAGATGGCAGTAGCAGCACGCCTTGCTACCAAATTCAATACCTATTATGCTGAA AGGCCAGTGCTCACGACCATGGTCACCAACGCTGTGCTTGGTGGTGTTGCCGATACCGTTGCGCAGCTGATTACG GCCTTCCGGACCCGCCGATCGCAGACAAGCGGGGACGATTTCCTATCGATCGAGATCCCCGACTTTGACAAGCAC AAGCCCTCTGCTGTAGGGGAATCGGGATATGTTCGGAGCTCATTGCCGCCTTTCGATTTTGAGCGTCTGACGAGA TTCATGGCTTATGGCTTCTTCATGGCGCCGCTGCAGTTCCAGTGGTTCGGCTTCTTGTCCAGAGCATTCCCACTC ACTAAGAAGAACCCGACGGCCCCAGCTTTCAAGCGTGTCGCCTTTGACCAGTTAATTTTTGCGCCATTTGGTCTG GTGGTCTTCTTCACCTACATGACGATCGCCGAGGGTGGTGGTAGAAGGGCATTGACAAACAAGTTCCGTGATGTC TACCTGCCTACCCTAAAGGCCAACTTTGTGCTCTGGCCGGCAGTGCAGATCCTAAATTTCCGTGTCGTTCCCATT CAGTTCCAGATCCCATTCGTCTCAACCGTTGGTATTGCATGGACTGCATACCTTTCTCTGACTAACTCCTCCGAG GAGTCCTAA |
| Transcript | >Pro_DTO070G2_2|g8578.t1 ATGATCTGCTCTGCGAAGCGGAAAGTCCTGGATGGACTGAATAAGAGATATATTTACGGTCGCGTGCCTTTATTG CACACGATAATTTTCCTCGTCGAGATGGCAGTAGCAGCACGCCTTGCTACCAAATTCAATACCTATTATGCTGAA AGGCCAGTGCTCACGACCATGGTCACCAACGCTGTGCTTGGTGGTGTTGCCGATACCGTTGCGCAGCTGATTACG GCCTTCCGGACCCGCCGATCGCAGACAAGCGGGGACGATTTCCTATCGATCGAGATCCCCGACTTTGACAAGCAC AAGCCCTCTGCTGTAGGGGAATCGGGATATGTTCGGAGCTCATTGCCGCCTTTCGATTTTGAGCGTCTGACGAGA TTCATGGCTTATGGCTTCTTCATGGCGCCGCTGCAGTTCCAGTGGTTCGGCTTCTTGTCCAGAGCATTCCCACTC ACTAAGAAGAACCCGACGGCCCCAGCTTTCAAGCGTGTCGCCTTTGACCAGTTAATTTTTGCGCCATTTGGTCTG GTGGTCTTCTTCACCTACATGACGATCGCCGAGGGTGGTGGTAGAAGGGCATTGACAAACAAGTTCCGTGATGTC TACCTGCCTACCCTAAAGGCCAACTTTGTGCTCTGGCCGGCAGTGCAGATCCTAAATTTCCGTGTCGTTCCCATT CAGTTCCAGATCCCATTCGTCTCAACCGTTGGTATTGCATGGACTGCATACCTTTCTCTGACTAACTCCTCCGAG GAGTCCTAA |
| Gene | >Pro_DTO070G2_2|g8578.t1 ATGATCTGCTCTGCGAAGCGGAAAGTCCTGGATGGACTGAATAAGAGATATATTTACGGTCGCGTGGTATGCACC TTCCTAAAGCCTGACATATCGTCACCTCTCAATTTGATTACGGCTAACCCTGTGGTCATTATCTTCAAGCCTTTA TTGCACACGATAATTTTCCTCGTCGAGATGGCAGTAGCAGCACGCCTTGCTACCAAATTCAATACCTATTATGCT GAAAGGCCAGGTAAGCCTCTTTCCGCCTGTTCCCGCGGGATCACAGACTGACATCACTACTGTAAATAGTGCTCA CGACCATGGTCACCAACGCTGTAAGCTTGCCGCGATATTGATCACCAAAGTTTGGACTGACAGCTGACTAAATGG ATGTTACAGGTGCTTGGTGGTGTTGCCGATACCGTTGCGCAGCTGATTACGGCCTTCCGGACCCGCCGATCGCAG ACAAGCGGGGACGATTTCCTATCGATCGAGATCCCCGACTTTGACAAGCACAAGCCCTCTGCTGTAGGGGAATCG GGATATGTTCGGAGCTCATTGCCGCCTTTCGATTTTGAGCGTCTGACGAGATTCATGGCTTATGGCTTCTTCATG GCGCCGCTGCAGTTCCAGTGGTTCGGCTTCTTGTCCAGAGCATTCCCACTCACTAAGAAGAACCCGACGGCCCCA GCTTTCAAGCGTGTCGCCTTTGACCAGTTAATTTTTGCGCCATTTGGTATGATCCGCCTCTAGCTACTTTGGGAT GTCTTTGGACCGGACTGATTTATCTAGGTCTGGTGGTCTTCTTCACCTACATGACGATCGCCGAGGGTGGTGGTA GAAGGGCATTGACAAACAAGTTCCGTGATGTCTACCTGCCTACCCTAAAGGCCAACTTTGTGCTCTGGCCGGCAG TGCAGATCCTAAATTTCCGTGTCGTTCCCATTCAGTTCCAGATCGTAAGTCTCCTAAGTTCTCCTTGTTAGGATA GAACCCATACTGACTTCTCAACCCAGCCATTCGTCTCAACCGTTGGTATTGCATGGACTGCATACCTTTCTCTGA CTAACTCCTCCGAGGAGTCCTAA |