© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g8301.t1 |
| Gene name | |
| Location | scaffold_17:413637..414429 |
| Strand | - |
| Gene length (bp) | 792 |
| Transcript length (bp) | 633 |
| Coding sequence length (bp) | 633 |
| Protein length (aa) | 211 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00319 | SRF-TF | SRF-type transcription factor (DNA-binding and dimerisation domain) | 2.9E-21 | 54 | 101 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046983 | protein dimerization activity | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005515 | protein binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| SRF-type |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g8301.t1 MSAVLDEKLSPGHDDLPGNGADARGTKRNRMSADDEDDDDDKPGRERRKIEIKFIQDKSRRHITFSKRKAGIMKK AYELSVLTGTQVLLLVVSETGLVYTFTTPKLQPLVTKAEGKNLIQACLNAPDPAASENGVDAPDVAPEAPEDVAH NNVNAPQGNMRPGIHPGYMTNEQQQQMAYYQNLQQQQQQAGGQYPMPVGGRMPPQHQPTA* |
| Coding | >Pro_DTO070G2_2|g8301.t1 ATGTCTGCGGTTCTTGATGAAAAGCTTTCCCCTGGTCACGATGACCTTCCCGGCAACGGCGCCGACGCCCGTGGC ACCAAGCGCAACCGCATGAGCGCCGATGATGAAGATGATGATGATGACAAGCCCGGTCGTGAGCGCCGCAAGATC GAGATCAAGTTTATCCAGGATAAGTCGCGTCGGCACATTACTTTCTCCAAGCGGAAGGCCGGCATCATGAAGAAG GCCTATGAACTCTCTGTCTTGACTGGCACTCAAGTTCTTCTCCTGGTCGTCTCTGAAACCGGTCTTGTCTACACC TTCACTACCCCCAAACTTCAGCCGCTGGTCACCAAGGCCGAGGGCAAGAACCTCATCCAGGCATGCCTCAACGCT CCCGACCCAGCCGCCAGTGAGAACGGTGTCGACGCCCCCGATGTTGCCCCCGAGGCCCCCGAAGATGTGGCTCAC AACAACGTCAACGCACCGCAGGGTAATATGCGCCCAGGTATTCACCCAGGCTACATGACCAACGAGCAGCAGCAG CAGATGGCGTACTACCAAAACCTCCAGCAGCAGCAACAGCAGGCTGGTGGTCAGTACCCCATGCCGGTCGGCGGT CGCATGCCGCCCCAGCACCAACCCACTGCTTAA |
| Transcript | >Pro_DTO070G2_2|g8301.t1 ATGTCTGCGGTTCTTGATGAAAAGCTTTCCCCTGGTCACGATGACCTTCCCGGCAACGGCGCCGACGCCCGTGGC ACCAAGCGCAACCGCATGAGCGCCGATGATGAAGATGATGATGATGACAAGCCCGGTCGTGAGCGCCGCAAGATC GAGATCAAGTTTATCCAGGATAAGTCGCGTCGGCACATTACTTTCTCCAAGCGGAAGGCCGGCATCATGAAGAAG GCCTATGAACTCTCTGTCTTGACTGGCACTCAAGTTCTTCTCCTGGTCGTCTCTGAAACCGGTCTTGTCTACACC TTCACTACCCCCAAACTTCAGCCGCTGGTCACCAAGGCCGAGGGCAAGAACCTCATCCAGGCATGCCTCAACGCT CCCGACCCAGCCGCCAGTGAGAACGGTGTCGACGCCCCCGATGTTGCCCCCGAGGCCCCCGAAGATGTGGCTCAC AACAACGTCAACGCACCGCAGGGTAATATGCGCCCAGGTATTCACCCAGGCTACATGACCAACGAGCAGCAGCAG CAGATGGCGTACTACCAAAACCTCCAGCAGCAGCAACAGCAGGCTGGTGGTCAGTACCCCATGCCGGTCGGCGGT CGCATGCCGCCCCAGCACCAACCCACTGCTTAA |
| Gene | >Pro_DTO070G2_2|g8301.t1 ATGTCTGCGGTTCTTGATGAAAAGCTTTCCCCTGGTCACGATGACCTTCCCGGCAACGGCGCCGACGCCCGTGGC ACCAAGCGCAACCGCATGAGCGCCGATGATGAAGATGATGATGATGACAAGCCCGGTCGTGAGCGCCGCAAGATC GAGATCAAGTTTATCCAGGATAAGTCGCGTCGGCACATTACTTTCTCCAAGCGGAAGGCCGGCATCATGAAGAAG GTGCGTCGCGTCCCGAGGCCCCCTCCGCATCAGTTCCCCGATCGAGGCTTTTTCCTCTATCTTGGATCGATTGGG ACTTTTAACTAATCGCCATCGGACTCTATAGGCCTATGAACTCTCTGTCTTGACTGGCACTCAAGTTCTTCTCCT GGTCGTCTCTGAAACCGGTCTTGTCTACACCTTCACTACCCCCAAACTTCAGCCGCTGGTCACCAAGGCCGAGGG CAAGAACCTCATCCAGGTAAGCCATGGTCTACTTCAATGATATTATTTCATCCATTAACATCCTGATAGGCATGC CTCAACGCTCCCGACCCAGCCGCCAGTGAGAACGGTGTCGACGCCCCCGATGTTGCCCCCGAGGCCCCCGAAGAT GTGGCTCACAACAACGTCAACGCACCGCAGGGTAATATGCGCCCAGGTATTCACCCAGGCTACATGACCAACGAG CAGCAGCAGCAGATGGCGTACTACCAAAACCTCCAGCAGCAGCAACAGCAGGCTGGTGGTCAGTACCCCATGCCG GTCGGCGGTCGCATGCCGCCCCAGCACCAACCCACTGCTTAA |