© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g83.t1 |
| Gene name | |
| Location | scaffold_01:241433..242507 |
| Strand | - |
| Gene length (bp) | 1074 |
| Transcript length (bp) | 1026 |
| Coding sequence length (bp) | 1026 |
| Protein length (aa) | 342 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04769 | MATalpha_HMGbox | Mating-type protein MAT alpha 1 HMG-box | 3.4E-26 | 118 | 252 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0007531 | mating type determination | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0045895 | positive regulation of mating-type specific transcription, DNA-templated | Yes |
| GO:0008301 | DNA binding, bending | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0007532 | regulation of mating-type specific transcription, DNA-templated | No |
| GO:0003674 | molecular_function | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0009891 | positive regulation of biosynthetic process | No |
| GO:0005575 | cellular_component | No |
| GO:0031325 | positive regulation of cellular metabolic process | No |
| GO:0051173 | positive regulation of nitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0051254 | positive regulation of RNA metabolic process | No |
| GO:0010604 | positive regulation of macromolecule metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003677 | DNA binding | No |
| GO:0032502 | developmental process | No |
| GO:1902680 | positive regulation of RNA biosynthetic process | No |
| GO:0048869 | cellular developmental process | No |
| GO:0007530 | sex determination | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0006355 | regulation of transcription, DNA-templated | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0045165 | cell fate commitment | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0048518 | positive regulation of biological process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:1903508 | positive regulation of nucleic acid-templated transcription | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0009893 | positive regulation of metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0048522 | positive regulation of cellular process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | No |
| GO:0010557 | positive regulation of macromolecule biosynthetic process | No |
| GO:0005488 | binding | No |
| GO:0003006 | developmental process involved in reproduction | No |
| GO:0022414 | reproductive process | No |
| GO:0045893 | positive regulation of transcription, DNA-templated | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043226 | organelle | No |
| GO:0031328 | positive regulation of cellular biosynthetic process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| HMG |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g83.t1 MSTPDVSVPLGYGPAHLEMLLFRYVETLSLRHALRVLERWPENSPVGQYAAKVLRELPANYFQQPRLLPTGPRFV YVNGVLELKRIDQALPMDQLHPDSTTGCVGAVIGNVLSSPLEQRRLRPLNSFMIFRSFCAPMFPGIPQKVKSMAI SEMWQDDTLKSHWAVLAKAYTVIRDHFHVDTPSLSAFVDLCLPLMGFLSRQQYLTLSGWIVQPSGTSLSLRKIGT SRLDTLHPPIIAVDQVVKHCTANNYAQKRDEEWHKHILENGAVFAVDPSFSATIPEPQNWVFNDVPQWPIEEFEV DEMYSTLDTERDLGLPVIYDPNKPPGFADTAATLGRIFGNN* |
| Coding | >Pro_DTO070G2_2|g83.t1 ATGTCTACTCCTGATGTTTCGGTCCCTCTGGGATACGGACCTGCTCATCTTGAGATGCTTTTGTTTCGATACGTC GAGACCTTGTCCCTCCGACACGCCCTTAGGGTGTTGGAACGTTGGCCTGAAAATTCTCCTGTGGGACAGTATGCA GCTAAAGTTCTACGTGAGCTTCCTGCGAATTACTTTCAGCAGCCAAGACTTCTACCCACTGGGCCACGTTTTGTC TATGTGAATGGCGTGCTAGAACTGAAACGTATCGATCAAGCCTTGCCTATGGACCAACTCCACCCTGACTCAACC ACCGGATGTGTTGGCGCTGTGATTGGGAATGTACTCTCGTCTCCCTTGGAGCAGCGACGCCTTCGACCCCTCAAC AGCTTCATGATTTTCAGAAGCTTTTGTGCTCCCATGTTCCCTGGGATCCCACAGAAAGTAAAGTCGATGGCCATC AGTGAAATGTGGCAAGACGACACTTTGAAGTCCCACTGGGCTGTCCTCGCCAAGGCCTATACGGTTATCCGTGAT CATTTCCATGTCGACACCCCCTCACTGTCTGCATTTGTTGACCTTTGCCTGCCTTTGATGGGTTTCCTGTCCCGT CAGCAGTACCTCACCCTGTCTGGTTGGATTGTCCAGCCCAGTGGCACTAGCCTCAGCCTGCGCAAGATCGGTACC TCACGCCTGGATACTCTACACCCTCCCATCATTGCTGTTGACCAAGTCGTCAAGCACTGCACCGCCAACAACTAC GCCCAGAAACGCGATGAAGAGTGGCACAAGCACATTCTCGAGAACGGAGCCGTGTTTGCCGTGGACCCTTCTTTT TCAGCTACCATCCCGGAACCTCAGAACTGGGTGTTCAACGACGTTCCTCAATGGCCAATTGAAGAATTTGAAGTT GACGAGATGTACTCCACCCTTGATACCGAGCGCGACCTGGGCCTTCCTGTCATCTATGATCCCAACAAGCCCCCC GGTTTCGCTGACACTGCGGCAACCCTTGGTCGAATCTTCGGGAATAACTAG |
| Transcript | >Pro_DTO070G2_2|g83.t1 ATGTCTACTCCTGATGTTTCGGTCCCTCTGGGATACGGACCTGCTCATCTTGAGATGCTTTTGTTTCGATACGTC GAGACCTTGTCCCTCCGACACGCCCTTAGGGTGTTGGAACGTTGGCCTGAAAATTCTCCTGTGGGACAGTATGCA GCTAAAGTTCTACGTGAGCTTCCTGCGAATTACTTTCAGCAGCCAAGACTTCTACCCACTGGGCCACGTTTTGTC TATGTGAATGGCGTGCTAGAACTGAAACGTATCGATCAAGCCTTGCCTATGGACCAACTCCACCCTGACTCAACC ACCGGATGTGTTGGCGCTGTGATTGGGAATGTACTCTCGTCTCCCTTGGAGCAGCGACGCCTTCGACCCCTCAAC AGCTTCATGATTTTCAGAAGCTTTTGTGCTCCCATGTTCCCTGGGATCCCACAGAAAGTAAAGTCGATGGCCATC AGTGAAATGTGGCAAGACGACACTTTGAAGTCCCACTGGGCTGTCCTCGCCAAGGCCTATACGGTTATCCGTGAT CATTTCCATGTCGACACCCCCTCACTGTCTGCATTTGTTGACCTTTGCCTGCCTTTGATGGGTTTCCTGTCCCGT CAGCAGTACCTCACCCTGTCTGGTTGGATTGTCCAGCCCAGTGGCACTAGCCTCAGCCTGCGCAAGATCGGTACC TCACGCCTGGATACTCTACACCCTCCCATCATTGCTGTTGACCAAGTCGTCAAGCACTGCACCGCCAACAACTAC GCCCAGAAACGCGATGAAGAGTGGCACAAGCACATTCTCGAGAACGGAGCCGTGTTTGCCGTGGACCCTTCTTTT TCAGCTACCATCCCGGAACCTCAGAACTGGGTGTTCAACGACGTTCCTCAATGGCCAATTGAAGAATTTGAAGTT GACGAGATGTACTCCACCCTTGATACCGAGCGCGACCTGGGCCTTCCTGTCATCTATGATCCCAACAAGCCCCCC GGTTTCGCTGACACTGCGGCAACCCTTGGTCGAATCTTCGGGAATAACTAG |
| Gene | >Pro_DTO070G2_2|g83.t1 ATGTCTACTCCTGATGTTTCGGTCCCTCTGGGATACGGACCTGCTCATCTTGAGATGCTTTTGTTTCGATACGTC GAGACCTTGTCCCTCCGACACGCCCTTAGGGTGTTGGAACGTTGGCCTGAAAATTCTCCTGTGGGACAGTATGCA GCTAAAGTTCTACGTGAGCTTCCTGCGAATTACTTTCAGCAGCCAAGACTTCTACCCACTGGGCCACGTTTTGTC TATGTGAATGGCGTGCTAGAACTGAAACGTATCGATCAAGCCTTGCCTATGGACCAACTCCACCCTGACTCAACC ACCGGATGTGTTGGCGCTGTGATTGGGAATGTACTCTCGTCTCCCTTGGAGCAGCGACGCCTTCGACCCCTCAAC AGCTTCATGATTTTCAGAAGTAAGTAGGATCTTCATGATTGTTGATTCATTTCTAACAGTATTTTAGGCTTTTGT GCTCCCATGTTCCCTGGGATCCCACAGAAAGTAAAGTCGATGGCCATCAGTGAAATGTGGCAAGACGACACTTTG AAGTCCCACTGGGCTGTCCTCGCCAAGGCCTATACGGTTATCCGTGATCATTTCCATGTCGACACCCCCTCACTG TCTGCATTTGTTGACCTTTGCCTGCCTTTGATGGGTTTCCTGTCCCGTCAGCAGTACCTCACCCTGTCTGGTTGG ATTGTCCAGCCCAGTGGCACTAGCCTCAGCCTGCGCAAGATCGGTACCTCACGCCTGGATACTCTACACCCTCCC ATCATTGCTGTTGACCAAGTCGTCAAGCACTGCACCGCCAACAACTACGCCCAGAAACGCGATGAAGAGTGGCAC AAGCACATTCTCGAGAACGGAGCCGTGTTTGCCGTGGACCCTTCTTTTTCAGCTACCATCCCGGAACCTCAGAAC TGGGTGTTCAACGACGTTCCTCAATGGCCAATTGAAGAATTTGAAGTTGACGAGATGTACTCCACCCTTGATACC GAGCGCGACCTGGGCCTTCCTGTCATCTATGATCCCAACAAGCCCCCCGGTTTCGCTGACACTGCGGCAACCCTT GGTCGAATCTTCGGGAATAACTAG |