© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g6856.t1 |
| Gene name | |
| Location | scaffold_10:688007..689749 |
| Strand | - |
| Gene length (bp) | 1742 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04139 | Rad9 | Rad9 | 1.9E-51 | 19 | 284 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030896 | checkpoint clamp complex | Yes |
| GO:0000077 | DNA damage checkpoint signaling | Yes |
| GO:1901987 | regulation of cell cycle phase transition | No |
| GO:0051726 | regulation of cell cycle | No |
| GO:0032991 | protein-containing complex | No |
| GO:0033554 | cellular response to stress | No |
| GO:0006950 | response to stress | No |
| GO:0009987 | cellular process | No |
| GO:0031570 | DNA integrity checkpoint signaling | No |
| GO:0005575 | cellular_component | No |
| GO:0048519 | negative regulation of biological process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0048523 | negative regulation of cellular process | No |
| GO:0008150 | biological_process | No |
| GO:0007165 | signal transduction | No |
| GO:0010564 | regulation of cell cycle process | No |
| GO:0042770 | signal transduction in response to DNA damage | No |
| GO:0035556 | intracellular signal transduction | No |
| GO:0000075 | cell cycle checkpoint signaling | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0045786 | negative regulation of cell cycle | No |
| GO:0010948 | negative regulation of cell cycle process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0050896 | response to stimulus | No |
| GO:0050789 | regulation of biological process | No |
| GO:0065007 | biological regulation | No |
| GO:1901988 | negative regulation of cell cycle phase transition | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g6856.t1 MTSLSLSLGPLALVRLHDALICLSKFSETVAIEAEPDMLRLSALNSTKTGFASFTFEKEVFFEAYSFNSSSNDRS GSVSLERFFCQIYNKALLSIFRGKTDRNKDTAVERCDMELHEDLQQAECRLTVKMICGLGVIKSYKLTYEPAAIQ HAIFDKSRATSMWTADPRFLKQLIEHFSLSAEQLDMYSDSGRAVFTSFTTKITEGKEVLKHPVHTSVAADTRDFQ EYLVEENMHVAINLKDFKAVVAHAETANATVTARYTRPCKPLQLEYGFEGINAEFTVMTRGQADSEDAPTSTRAS IPRQTPVPIPISASRSRDTRPSVTTNTQMPPPPPRTRSIRPLNGSSTQENLSQRASADRPAASGLSMEFDSLFVP ADDDRQWDEMKDEEEPQDILGWDASGTQDAFGATIRDAEPALLREDEPNDETGLPPTQRFSQVRQYGFFD* |
| Coding | >Pro_DTO070G2_2|g6856.t1 ATGACGTCGCTCTCATTGTCGCTAGGCCCGTTAGCCTTGGTCCGGCTCCACGACGCCTTGATATGCCTGTCCAAA TTCAGCGAAACAGTCGCCATCGAAGCAGAGCCTGATATGCTCCGCCTCAGTGCGCTCAATTCTACCAAGACGGGG TTTGCCTCCTTCACGTTCGAGAAGGAGGTATTCTTTGAGGCGTATTCTTTCAATTCCAGCAGTAATGACAGAAGT GGCAGTGTTTCGCTGGAACGATTCTTCTGCCAGATCTATAACAAAGCACTTCTCTCCATATTTCGTGGGAAAACC GACAGAAACAAGGACACAGCTGTTGAACGCTGTGACATGGAATTGCATGAAGATCTACAGCAAGCCGAGTGTAGA CTGACAGTGAAAATGATATGTGGACTAGGCGTGATCAAGTCATACAAGTTGACCTACGAACCAGCGGCCATTCAG CACGCCATCTTCGACAAATCCAGAGCTACCAGCATGTGGACAGCTGATCCACGGTTCCTCAAGCAGCTCATTGAG CACTTCAGCTTATCTGCCGAGCAGCTAGACATGTACTCCGATTCCGGCAGAGCGGTGTTCACGAGTTTTACAACA AAGATCACCGAAGGCAAGGAAGTACTAAAACACCCTGTCCACACATCCGTTGCAGCAGACACGCGCGACTTCCAA GAGTACTTGGTCGAAGAGAACATGCACGTCGCGATCAACCTAAAAGACTTCAAAGCCGTAGTTGCGCACGCCGAA ACGGCAAACGCCACCGTAACAGCACGGTACACCCGACCCTGCAAGCCTCTGCAGCTGGAGTACGGATTTGAAGGC ATCAACGCAGAATTCACAGTCATGACCCGCGGCCAGGCAGATAGCGAAGACGCCCCGACGTCAACACGAGCGTCA ATCCCACGGCAAACGCCCGTGCCTATCCCAATCTCAGCGAGCAGGTCGCGTGATACTCGCCCATCGGTGACGACA AATACGCAAATGCCTCCACCGCCACCGCGAACCAGATCCATCCGTCCTCTCAATGGGTCGTCTACGCAGGAGAAT CTGAGCCAGAGGGCTAGCGCAGATCGGCCGGCGGCGTCTGGGCTTTCGATGGAATTCGATAGCCTTTTCGTGCCT GCTGATGATGACCGGCAGTGGGATGAGATGAAGGACGAAGAGGAGCCGCAGGATATTCTTGGATGGGATGCGTCG GGAACACAGGACGCATTCGGGGCAACTATTCGCGATGCGGAGCCTGCCTTGTTGAGAGAGGATGAGCCAAACGAT GAGACGGGTCTCCCGCCAACACAACGTTTTTCTCAGGTTCGCCAATATGGTTTCTTCGACTGA |
| Transcript | >Pro_DTO070G2_2|g6856.t1 ATGACGTCGCTCTCATTGTCGCTAGGCCCGTTAGCCTTGGTCCGGCTCCACGACGCCTTGATATGCCTGTCCAAA TTCAGCGAAACAGTCGCCATCGAAGCAGAGCCTGATATGCTCCGCCTCAGTGCGCTCAATTCTACCAAGACGGGG TTTGCCTCCTTCACGTTCGAGAAGGAGGTATTCTTTGAGGCGTATTCTTTCAATTCCAGCAGTAATGACAGAAGT GGCAGTGTTTCGCTGGAACGATTCTTCTGCCAGATCTATAACAAAGCACTTCTCTCCATATTTCGTGGGAAAACC GACAGAAACAAGGACACAGCTGTTGAACGCTGTGACATGGAATTGCATGAAGATCTACAGCAAGCCGAGTGTAGA CTGACAGTGAAAATGATATGTGGACTAGGCGTGATCAAGTCATACAAGTTGACCTACGAACCAGCGGCCATTCAG CACGCCATCTTCGACAAATCCAGAGCTACCAGCATGTGGACAGCTGATCCACGGTTCCTCAAGCAGCTCATTGAG CACTTCAGCTTATCTGCCGAGCAGCTAGACATGTACTCCGATTCCGGCAGAGCGGTGTTCACGAGTTTTACAACA AAGATCACCGAAGGCAAGGAAGTACTAAAACACCCTGTCCACACATCCGTTGCAGCAGACACGCGCGACTTCCAA GAGTACTTGGTCGAAGAGAACATGCACGTCGCGATCAACCTAAAAGACTTCAAAGCCGTAGTTGCGCACGCCGAA ACGGCAAACGCCACCGTAACAGCACGGTACACCCGACCCTGCAAGCCTCTGCAGCTGGAGTACGGATTTGAAGGC ATCAACGCAGAATTCACAGTCATGACCCGCGGCCAGGCAGATAGCGAAGACGCCCCGACGTCAACACGAGCGTCA ATCCCACGGCAAACGCCCGTGCCTATCCCAATCTCAGCGAGCAGGTCGCGTGATACTCGCCCATCGGTGACGACA AATACGCAAATGCCTCCACCGCCACCGCGAACCAGATCCATCCGTCCTCTCAATGGGTCGTCTACGCAGGAGAAT CTGAGCCAGAGGGCTAGCGCAGATCGGCCGGCGGCGTCTGGGCTTTCGATGGAATTCGATAGCCTTTTCGTGCCT GCTGATGATGACCGGCAGTGGGATGAGATGAAGGACGAAGAGGAGCCGCAGGATATTCTTGGATGGGATGCGTCG GGAACACAGGACGCATTCGGGGCAACTATTCGCGATGCGGAGCCTGCCTTGTTGAGAGAGGATGAGCCAAACGAT GAGACGGGTCTCCCGCCAACACAACGTTTTTCTCAGGTTCGCCAATATGGTTTCTTCGACTGA |
| Gene | >Pro_DTO070G2_2|g6856.t1 ATGACGTCGCTCTCATTGTCGCTAGGCCCGTTAGCCTTGGTCCGGCTCCACGACGCCTTGATATGCCTGTCCAAA TTCAGCGAAACAGTCGCCATCGAAGCAGAGCCTGATATGGTAAGTTATCTTACTTTGGGGTGTTTGGCTCAGTCC AAGTTTTAGAAGCCGGCAAATGAAATGTTCTGGCTAACCGTTTCCCAGCTCCGCCTCAGTGCGCTCAATTCTACC AAGACGGGGTTTGCCTCCTTCACGTTCGAGAAGGAGGTATTCTTTGAGGCGTATTCTTTCAATTCCAGCAGTAAT GACAGAAGTGGCAGTGTTTCGCTGGAACGATTCTTCTGCCAGATCTATAACAAAGTGAGTATAGACTTTTCACTC TTGGAGCTGTACCCTACATATTTACTGGTTATCTTCCTTACTTTATGCTGATATAGAATACAGGCACTTCTCTCC ATATTTCGTGGGAAAACCGACAGAAACAAGGACACAGCTGTTGAACGCTGTGACATGGAATTGCATGAAGATCTA CAGCAAGCCGAGTGTAGACTGACAGTGAAAATGATATGTGGACTAGGTAAGATACACTTGCATAGATCTGTCTTT TTTAGCTTTGACTGCACATCTGACACTATATCTAGGCGTGATCAAGTCATACAAGTTGACCTACGAACCAGCGGC CATTCAGCACGCCATCTTCGACAAATCCAGAGCTACCAGCATGTGGACAGCTGATCCACGGTTCCTCAAGCAGCT CATTGAGCACTTCAGCTTATCTGCCGAGCAGCTAGACATGTACTCCGATTCCGGCAGAGCGGTGTTCACGAGTTT TACAACAAAGATCACCGAAGGCAAGGGTATGTCGAGTTCGCCTCCATCAAATCTCAGATGTCTAGTTAACTAACA ACCCAAACAGAAGTACTAAAACACCCTGTCCACACATCCGTTGCAGCAGACACGCGCGACTTCCAAGAGTACTTG GTCGAAGAGAACATGCACGTCGCGATCAACCTAAAAGACTTCAAAGCCGTAGTTGCGCACGCCGAAACGGCAAAC GCCACCGTAACAGCACGGTACACCCGACCCTGCAAGCCTCTGCAGCTGGAGTACGGATTTGAAGGCATCAACGCA GAATTCACAGTCATGACCCGCGGCCAGGCAGATAGCGAAGACGCCCCGACGTCAACACGAGCGTCAATCCCACGG CAAACGCCCGTGCCTATCCCAATCTCAGCGAGCAGGTCGCGTGATACTCGCCCATCGGTGACGACAAATACGCAA ATGCCTCCACCGCCACCGCGAACCAGATCCATCCGTCCTCTCAATGGGTCGTCTACGCAGGAGAATCTGAGCCAG AGGGCTAGCGCAGATCGGCCGGCGGCGTCTGGGCTTTCGATGGAATTCGATAGCCTTTTCGTGCCTGCTGATGAT GACCGGCAGTGGGATGAGATGAAGGACGAAGAGGAGCCGCAGGATATTCTTGGATGGGATGCGTCGGGAACACAG GTATGTGGTTTTCTTTCTTCCCCAGTGGGTATAGTGGGTGGCTAAACAAACGCGCAGGACGCATTCGGGGCAACT ATTCGCGATGCGGAGCCTGCCTTGTTGAGAGAGGATGAGCCAAACGATGAGACGGGTCTCCCGCCAACACAACGT TTTTCTCAGGTATGTGAATTCTGGCTCTTGCGACACTTTGATAGGCGTATGCTGATAGTTGATAGGTTCGCCAAT ATGGTTTCTTCGACTGA |