© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g6522.t1 |
| Gene name | |
| Location | scaffold_09:710557..712851 |
| Strand | + |
| Gene length (bp) | 2294 |
| Transcript length (bp) | 1542 |
| Coding sequence length (bp) | 1542 |
| Protein length (aa) | 514 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00098 | zf-CCHC | Zinc knuckle | 1.5E-06 | 67 | 84 |
| PF00098 | zf-CCHC | Zinc knuckle | 9.6E-05 | 90 | 106 |
| PF00098 | zf-CCHC | Zinc knuckle | 4.1E-06 | 112 | 128 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.3E-04 | 304 | 320 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.6E-03 | 331 | 348 |
| PF00098 | zf-CCHC | Zinc knuckle | 2.8E-05 | 355 | 371 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.9E-06 | 379 | 394 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.9E-06 | 402 | 419 |
| PF00098 | zf-CCHC | Zinc knuckle | 8.7E-06 | 427 | 443 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 8.0E-02 | 67 | 83 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 3.2E-01 | 89 | 105 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 6.4E-02 | 111 | 128 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 1.8E-01 | 298 | 319 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 8.3E+00 | 328 | 347 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 3.3E+00 | 452 | 466 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0005488 | binding | No |
| GO:0043169 | cation binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, CCHC-type |
| Orthofinder run ID | 2 |
| Orthogroup | 7054 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g6522.t1 METNIHEDRNEDFTCGQCGGSGHMTRQCPNASLPLRQRDSNAGDAYGNYGNDNGGGHGDYSGGGGDRACYNCGQE GHSKADCTEPRKMGACFNCGQDGHSKAECTEPRKMGACFNCGEEGHSKSECPKPRVFRGTCRICEKEGHPAVDCP ERPPDVCKNCQAQGHKTMECKENRKFDLNLVADMLPQEGWAAMKKASDERDLDDFREALKIYSKAVPNATWADIE KKMREDNFNIYIIAMEAEVDDVMSLIDLQGVLDREYVIGFFFNPKASRGHLRDRWPADAEENLERMKSAGIPYER KVPKCLNCGELGHISRSCKEERAEGNDRVEIKCSNCEGAGHRVRDCRQQRKHKHGCRNCGSIEHIASDCTEPRSA AGVECRRCNETGHFAKDCPTVADRGPRTCRNCGSEDHIARDCDQPRDVSTVTCRNCEKTGHYSRDCDQPKDWSKV QCKNCGEMGHTVVRCRQPPKEEEPQDEPTFSPGSPKREEPDPLNSEATDQQFEYKRHDDEDLW* |
| Coding | >Pro_DTO070G2_2|g6522.t1 ATGGAGACAAATATCCATGAAGACCGGAATGAAGATTTTACCTGCGGACAATGCGGTGGATCTGGCCATATGACT CGTCAGTGCCCGAATGCCTCTCTTCCTCTGAGACAGAGAGACAGCAATGCAGGTGATGCCTATGGCAACTACGGC AACGACAATGGTGGAGGACATGGTGATTACTCCGGTGGTGGCGGTGACCGCGCTTGCTACAACTGCGGCCAAGAA GGCCATAGCAAAGCCGACTGTACCGAGCCTCGCAAGATGGGGGCATGCTTCAACTGTGGCCAGGACGGTCACTCC AAGGCCGAATGCACCGAGCCTCGCAAGATGGGCGCTTGCTTCAACTGTGGCGAAGAAGGTCACTCCAAGTCCGAA TGTCCTAAGCCTCGCGTGTTCAGGGGTACCTGCCGTATCTGCGAAAAGGAAGGCCACCCAGCGGTTGATTGTCCT GAGAGACCCCCCGATGTTTGCAAGAACTGCCAGGCCCAAGGCCACAAGACGATGGAGTGCAAGGAGAATCGCAAG TTCGATCTCAACCTTGTTGCTGACATGCTACCCCAAGAAGGTTGGGCTGCAATGAAGAAAGCCAGTGACGAAAGG GATCTTGATGATTTCCGAGAGGCACTTAAAATCTACTCCAAGGCAGTCCCCAATGCCACCTGGGCAGACATTGAG AAGAAGATGCGAGAGGATAATTTCAACATCTACATCATTGCTATGGAGGCTGAAGTTGACGATGTCATGAGCCTT ATCGATCTTCAGGGAGTACTTGACCGTGAGTACGTGATTGGATTCTTTTTCAACCCCAAGGCGTCGCGTGGCCAC CTCCGAGATCGTTGGCCTGCAGATGCCGAGGAGAACCTAGAGCGCATGAAGAGCGCCGGTATTCCCTACGAGCGC AAGGTGCCTAAGTGCCTGAACTGTGGAGAGTTGGGACATATCTCCCGCAGTTGCAAGGAGGAGCGCGCCGAGGGC AATGATCGTGTGGAAATCAAGTGCTCAAACTGTGAGGGAGCTGGACACCGCGTACGCGATTGCAGACAGCAGCGC AAGCACAAGCATGGTTGCCGTAACTGCGGATCTATTGAGCATATTGCTTCTGACTGCACCGAGCCCCGATCTGCG GCTGGTGTTGAATGCCGGAGATGCAACGAAACTGGCCACTTTGCCAAAGATTGCCCCACTGTTGCTGACCGTGGC CCTCGCACCTGCCGCAATTGCGGATCCGAAGACCACATCGCTCGCGATTGTGATCAACCTCGTGACGTTTCCACT GTTACCTGCCGCAACTGCGAAAAGACCGGACATTACTCTCGTGATTGTGATCAGCCGAAAGATTGGTCGAAGGTT CAGTGCAAGAACTGCGGAGAAATGGGTCACACTGTTGTCCGTTGCCGCCAGCCGCCTAAGGAGGAAGAGCCTCAA GACGAACCTACTTTCTCCCCCGGCTCTCCCAAGCGCGAGGAACCTGATCCGCTGAACTCAGAGGCTACTGACCAA CAGTTTGAATACAAGCGCCATGACGACGAGGACCTCTGGTAA |
| Transcript | >Pro_DTO070G2_2|g6522.t1 ATGGAGACAAATATCCATGAAGACCGGAATGAAGATTTTACCTGCGGACAATGCGGTGGATCTGGCCATATGACT CGTCAGTGCCCGAATGCCTCTCTTCCTCTGAGACAGAGAGACAGCAATGCAGGTGATGCCTATGGCAACTACGGC AACGACAATGGTGGAGGACATGGTGATTACTCCGGTGGTGGCGGTGACCGCGCTTGCTACAACTGCGGCCAAGAA GGCCATAGCAAAGCCGACTGTACCGAGCCTCGCAAGATGGGGGCATGCTTCAACTGTGGCCAGGACGGTCACTCC AAGGCCGAATGCACCGAGCCTCGCAAGATGGGCGCTTGCTTCAACTGTGGCGAAGAAGGTCACTCCAAGTCCGAA TGTCCTAAGCCTCGCGTGTTCAGGGGTACCTGCCGTATCTGCGAAAAGGAAGGCCACCCAGCGGTTGATTGTCCT GAGAGACCCCCCGATGTTTGCAAGAACTGCCAGGCCCAAGGCCACAAGACGATGGAGTGCAAGGAGAATCGCAAG TTCGATCTCAACCTTGTTGCTGACATGCTACCCCAAGAAGGTTGGGCTGCAATGAAGAAAGCCAGTGACGAAAGG GATCTTGATGATTTCCGAGAGGCACTTAAAATCTACTCCAAGGCAGTCCCCAATGCCACCTGGGCAGACATTGAG AAGAAGATGCGAGAGGATAATTTCAACATCTACATCATTGCTATGGAGGCTGAAGTTGACGATGTCATGAGCCTT ATCGATCTTCAGGGAGTACTTGACCGTGAGTACGTGATTGGATTCTTTTTCAACCCCAAGGCGTCGCGTGGCCAC CTCCGAGATCGTTGGCCTGCAGATGCCGAGGAGAACCTAGAGCGCATGAAGAGCGCCGGTATTCCCTACGAGCGC AAGGTGCCTAAGTGCCTGAACTGTGGAGAGTTGGGACATATCTCCCGCAGTTGCAAGGAGGAGCGCGCCGAGGGC AATGATCGTGTGGAAATCAAGTGCTCAAACTGTGAGGGAGCTGGACACCGCGTACGCGATTGCAGACAGCAGCGC AAGCACAAGCATGGTTGCCGTAACTGCGGATCTATTGAGCATATTGCTTCTGACTGCACCGAGCCCCGATCTGCG GCTGGTGTTGAATGCCGGAGATGCAACGAAACTGGCCACTTTGCCAAAGATTGCCCCACTGTTGCTGACCGTGGC CCTCGCACCTGCCGCAATTGCGGATCCGAAGACCACATCGCTCGCGATTGTGATCAACCTCGTGACGTTTCCACT GTTACCTGCCGCAACTGCGAAAAGACCGGACATTACTCTCGTGATTGTGATCAGCCGAAAGATTGGTCGAAGGTT CAGTGCAAGAACTGCGGAGAAATGGGTCACACTGTTGTCCGTTGCCGCCAGCCGCCTAAGGAGGAAGAGCCTCAA GACGAACCTACTTTCTCCCCCGGCTCTCCCAAGCGCGAGGAACCTGATCCGCTGAACTCAGAGGCTACTGACCAA CAGTTTGAATACAAGCGCCATGACGACGAGGACCTCTGGTAA |
| Gene | >Pro_DTO070G2_2|g6522.t1 ATGGAGACAAATATCCATGAAGACCGGAATGAAGATTTTACCTGCGGACAGTGAGTTCTCCCCTCCAAAATTCTA GCTTTCAAGGCTTAGGATATCCCCCCGAGAAAATCAGTCACTTAAAATTCTAGATGCGGTGGATCTGGCCATATG ACTCGTCAGTGCCCGAATGCCTCTCTTCCTCTGAGACAGAGAGACAGCAATGCAGGGTAAGTTGGTCCTACACTT TCCATGTCACATTCTGCCAGTCCATCTAACCAATGCTAAAATATAGTGATGCCTATGGCAACTACGGCAACGACA ATGGTGGAGGACATGGTGATTACTCCGGTGGTGGCGGTGACCGCGCTTGCTACAACTGCGGCCAAGAAGGGTAAG TCGTTGATATCTGTGTACTTGCCAAATTTTACTGACAACAATGCAGCCATAGCAAAGCCGACTGTACCGAGCCTC GCAAGATGGGGGCATGCTTCAACTGTGGCCAGGACGGGTGAGTTATTATTGAACATCTTGTGTATTACGGCGTTA ATTATTCTCTTGAAACAGTCACTCCAAGGCCGAATGCACCGAGCCTCGCAAGATGGGCGCTTGCTTCAACTGTGG CGAAGAAGGGTGAGTAACTGCTGGGCGTTTTATACTTTAGTTTGCTAATTGGCTCCAAATACAGTCACTCCAAGT CCGAATGTCCTAAGCCTCGCGTGTTCAGGGGTACCTGCCGTATCTGCGAAAAGGAAGGCCACCCAGCGGTTGATT GTCCTGAGAGACCCCCCGATGTTTGCAAGAACTGCCAGGCCCAAGGCCACAAGACGATGGAGTGCAAGGAGAATC GCAAGTTCGATCTCAACCTTGTTGCTGACATGCTACCCCAAGAAGGTTGGGCTGCAATGAAGAAAGCCAGTGACG AAAGGGATCTTGATGATTTCCGAGAGGTACCAAAAATCCATACGTACCTTGAAAGTTTCGAACTTTGGCTGACCT AACTCCAGGCACTTAAAATCTACTCCAAGGCAGTCCCCAATGCCACCTGGGCAGACATTGAGAAGAAGATGCGAG AGGATAATTTCAACATCTACATCATTGCTATGGTAATCAATCATCATCGTTCTGATACTTGGGGATGAATCGCTA ATGAATGAATTTTAATTATAGGAGGCTGAAGTTGACGATGTCATGAGCCTTATCGATCTTCAGGGAGTACTTGAC CGTGAGTACGTGATTGGATTCTTTTTCAACCCCAAGGCGTCGCGTGGCCACCTCCGAGATCGTTGGCCTGCAGAT GCCGAGGAGAACCTAGAGCGCATGAAGAGCGCCGGTATTCCCTACGAGCGCAAGGTGCCTAAGTGCCTGAACTGT GGAGGTAAGTGTTTACTTTGAAGATTCCTTATAATATTGCTAAATTCTGTTTAGAGTTGGGACATATCTCCCGCA GTTGCAAGGAGGAGCGCGCCGAGGGCAATGATCGTGTGGAAATCAAGTGCTCAAACTGTGAGGGAGCTGGACACC GCGTACGCGATTGCAGACAGCAGCGCAAGCACAAGCATGGTTGCCGTAACTGCGGGTATGTGGCTGTGGTGCAAA CAACGAACTGGATAATGCTGACTTTTATGAAGATCTATTGAGCATATTGCTTCTGACTGCACCGAGCCCCGATCT GCGGCTGGTGTTGAATGCCGGAGATGCAACGAAAGTAAGACCTTGCCCAAGATGATTCAAATATTTCATGATGCT AATGTATCTATTTCAGCTGGCCACTTTGCCAAAGATTGCCCCACTGTTGCTGACCGTGGCCCTCGCACCTGCCGC AATTGCGGGTATGTTAAAATATCATAGCCCCTGCGATTGTCGCTGATTCTAACATCAATACAGATCCGAAGACCA CATCGCTCGCGATTGTGATCAACCTCGTGACGTTTCCACTGTTACCTGCCGCAACTGCGAAAAGAGTAAGTGCGA TGCATGCCCCAAAGATTCTTGGAAACACAACTGACAACTGCTATTTTAGCCGGACATTACTCTCGTGATTGTGAT CAGCCGAAAGATTGGTCGAAGGTTCAGTGCAAGAACTGCGGAGAAAGTGAGTTGATACATGCGTTTTTAATACTG AGTTAGTCCGCTAACAATCCTTAGTGGGTCACACTGTTGTCCGTTGCCGCCAGCCGCCTAAGGAGGAAGAGCCTC AAGACGAACCTACTTTCTCCCCCGGCTCTCCCAAGCGCGAGGAACCTGATCCGCTGAACTCAGAGGCTACTGACC AACAGTTTGAATACAAGCGCCATGACGACGAGGACCTCTGGTAA |