Protein ID | Pro_DTO070G2_2|g6522.t1 |
Gene name | |
Location | scaffold_09:710557..712851 |
Strand | + |
Gene length (bp) | 2294 |
Transcript length (bp) | 1542 |
Coding sequence length (bp) | 1542 |
Protein length (aa) | 514 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00098 | zf-CCHC | Zinc knuckle | 1.5E-06 | 67 | 84 |
PF00098 | zf-CCHC | Zinc knuckle | 9.6E-05 | 90 | 106 |
PF00098 | zf-CCHC | Zinc knuckle | 4.1E-06 | 112 | 128 |
PF00098 | zf-CCHC | Zinc knuckle | 1.3E-04 | 304 | 320 |
PF00098 | zf-CCHC | Zinc knuckle | 1.6E-03 | 331 | 348 |
PF00098 | zf-CCHC | Zinc knuckle | 2.8E-05 | 355 | 371 |
PF00098 | zf-CCHC | Zinc knuckle | 1.9E-06 | 379 | 394 |
PF00098 | zf-CCHC | Zinc knuckle | 1.9E-06 | 402 | 419 |
PF00098 | zf-CCHC | Zinc knuckle | 8.7E-06 | 427 | 443 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 8.0E-02 | 67 | 83 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 3.2E-01 | 89 | 105 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 6.4E-02 | 111 | 128 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 1.8E-01 | 298 | 319 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 8.3E+00 | 328 | 347 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 3.3E+00 | 452 | 466 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008270 | zinc ion binding | Yes |
GO:0003676 | nucleic acid binding | Yes |
GO:0005488 | binding | No |
GO:0043169 | cation binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0046914 | transition metal ion binding | No |
GO:0043167 | ion binding | No |
GO:0046872 | metal ion binding | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0003674 | molecular_function | No |
Transcription Factor Class (based on PFAM domains) |
---|
Zinc finger, CCHC-type |
Orthofinder run ID | 2 |
Orthogroup | 7054 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO070G2_2|g6522.t1 METNIHEDRNEDFTCGQCGGSGHMTRQCPNASLPLRQRDSNAGDAYGNYGNDNGGGHGDYSGGGGDRACYNCGQE GHSKADCTEPRKMGACFNCGQDGHSKAECTEPRKMGACFNCGEEGHSKSECPKPRVFRGTCRICEKEGHPAVDCP ERPPDVCKNCQAQGHKTMECKENRKFDLNLVADMLPQEGWAAMKKASDERDLDDFREALKIYSKAVPNATWADIE KKMREDNFNIYIIAMEAEVDDVMSLIDLQGVLDREYVIGFFFNPKASRGHLRDRWPADAEENLERMKSAGIPYER KVPKCLNCGELGHISRSCKEERAEGNDRVEIKCSNCEGAGHRVRDCRQQRKHKHGCRNCGSIEHIASDCTEPRSA AGVECRRCNETGHFAKDCPTVADRGPRTCRNCGSEDHIARDCDQPRDVSTVTCRNCEKTGHYSRDCDQPKDWSKV QCKNCGEMGHTVVRCRQPPKEEEPQDEPTFSPGSPKREEPDPLNSEATDQQFEYKRHDDEDLW* |
Coding | >Pro_DTO070G2_2|g6522.t1 ATGGAGACAAATATCCATGAAGACCGGAATGAAGATTTTACCTGCGGACAATGCGGTGGATCTGGCCATATGACT CGTCAGTGCCCGAATGCCTCTCTTCCTCTGAGACAGAGAGACAGCAATGCAGGTGATGCCTATGGCAACTACGGC AACGACAATGGTGGAGGACATGGTGATTACTCCGGTGGTGGCGGTGACCGCGCTTGCTACAACTGCGGCCAAGAA GGCCATAGCAAAGCCGACTGTACCGAGCCTCGCAAGATGGGGGCATGCTTCAACTGTGGCCAGGACGGTCACTCC AAGGCCGAATGCACCGAGCCTCGCAAGATGGGCGCTTGCTTCAACTGTGGCGAAGAAGGTCACTCCAAGTCCGAA TGTCCTAAGCCTCGCGTGTTCAGGGGTACCTGCCGTATCTGCGAAAAGGAAGGCCACCCAGCGGTTGATTGTCCT GAGAGACCCCCCGATGTTTGCAAGAACTGCCAGGCCCAAGGCCACAAGACGATGGAGTGCAAGGAGAATCGCAAG TTCGATCTCAACCTTGTTGCTGACATGCTACCCCAAGAAGGTTGGGCTGCAATGAAGAAAGCCAGTGACGAAAGG GATCTTGATGATTTCCGAGAGGCACTTAAAATCTACTCCAAGGCAGTCCCCAATGCCACCTGGGCAGACATTGAG AAGAAGATGCGAGAGGATAATTTCAACATCTACATCATTGCTATGGAGGCTGAAGTTGACGATGTCATGAGCCTT ATCGATCTTCAGGGAGTACTTGACCGTGAGTACGTGATTGGATTCTTTTTCAACCCCAAGGCGTCGCGTGGCCAC CTCCGAGATCGTTGGCCTGCAGATGCCGAGGAGAACCTAGAGCGCATGAAGAGCGCCGGTATTCCCTACGAGCGC AAGGTGCCTAAGTGCCTGAACTGTGGAGAGTTGGGACATATCTCCCGCAGTTGCAAGGAGGAGCGCGCCGAGGGC AATGATCGTGTGGAAATCAAGTGCTCAAACTGTGAGGGAGCTGGACACCGCGTACGCGATTGCAGACAGCAGCGC AAGCACAAGCATGGTTGCCGTAACTGCGGATCTATTGAGCATATTGCTTCTGACTGCACCGAGCCCCGATCTGCG GCTGGTGTTGAATGCCGGAGATGCAACGAAACTGGCCACTTTGCCAAAGATTGCCCCACTGTTGCTGACCGTGGC CCTCGCACCTGCCGCAATTGCGGATCCGAAGACCACATCGCTCGCGATTGTGATCAACCTCGTGACGTTTCCACT GTTACCTGCCGCAACTGCGAAAAGACCGGACATTACTCTCGTGATTGTGATCAGCCGAAAGATTGGTCGAAGGTT CAGTGCAAGAACTGCGGAGAAATGGGTCACACTGTTGTCCGTTGCCGCCAGCCGCCTAAGGAGGAAGAGCCTCAA GACGAACCTACTTTCTCCCCCGGCTCTCCCAAGCGCGAGGAACCTGATCCGCTGAACTCAGAGGCTACTGACCAA CAGTTTGAATACAAGCGCCATGACGACGAGGACCTCTGGTAA |
Transcript | >Pro_DTO070G2_2|g6522.t1 ATGGAGACAAATATCCATGAAGACCGGAATGAAGATTTTACCTGCGGACAATGCGGTGGATCTGGCCATATGACT CGTCAGTGCCCGAATGCCTCTCTTCCTCTGAGACAGAGAGACAGCAATGCAGGTGATGCCTATGGCAACTACGGC AACGACAATGGTGGAGGACATGGTGATTACTCCGGTGGTGGCGGTGACCGCGCTTGCTACAACTGCGGCCAAGAA GGCCATAGCAAAGCCGACTGTACCGAGCCTCGCAAGATGGGGGCATGCTTCAACTGTGGCCAGGACGGTCACTCC AAGGCCGAATGCACCGAGCCTCGCAAGATGGGCGCTTGCTTCAACTGTGGCGAAGAAGGTCACTCCAAGTCCGAA TGTCCTAAGCCTCGCGTGTTCAGGGGTACCTGCCGTATCTGCGAAAAGGAAGGCCACCCAGCGGTTGATTGTCCT GAGAGACCCCCCGATGTTTGCAAGAACTGCCAGGCCCAAGGCCACAAGACGATGGAGTGCAAGGAGAATCGCAAG TTCGATCTCAACCTTGTTGCTGACATGCTACCCCAAGAAGGTTGGGCTGCAATGAAGAAAGCCAGTGACGAAAGG GATCTTGATGATTTCCGAGAGGCACTTAAAATCTACTCCAAGGCAGTCCCCAATGCCACCTGGGCAGACATTGAG AAGAAGATGCGAGAGGATAATTTCAACATCTACATCATTGCTATGGAGGCTGAAGTTGACGATGTCATGAGCCTT ATCGATCTTCAGGGAGTACTTGACCGTGAGTACGTGATTGGATTCTTTTTCAACCCCAAGGCGTCGCGTGGCCAC CTCCGAGATCGTTGGCCTGCAGATGCCGAGGAGAACCTAGAGCGCATGAAGAGCGCCGGTATTCCCTACGAGCGC AAGGTGCCTAAGTGCCTGAACTGTGGAGAGTTGGGACATATCTCCCGCAGTTGCAAGGAGGAGCGCGCCGAGGGC AATGATCGTGTGGAAATCAAGTGCTCAAACTGTGAGGGAGCTGGACACCGCGTACGCGATTGCAGACAGCAGCGC AAGCACAAGCATGGTTGCCGTAACTGCGGATCTATTGAGCATATTGCTTCTGACTGCACCGAGCCCCGATCTGCG GCTGGTGTTGAATGCCGGAGATGCAACGAAACTGGCCACTTTGCCAAAGATTGCCCCACTGTTGCTGACCGTGGC CCTCGCACCTGCCGCAATTGCGGATCCGAAGACCACATCGCTCGCGATTGTGATCAACCTCGTGACGTTTCCACT GTTACCTGCCGCAACTGCGAAAAGACCGGACATTACTCTCGTGATTGTGATCAGCCGAAAGATTGGTCGAAGGTT CAGTGCAAGAACTGCGGAGAAATGGGTCACACTGTTGTCCGTTGCCGCCAGCCGCCTAAGGAGGAAGAGCCTCAA GACGAACCTACTTTCTCCCCCGGCTCTCCCAAGCGCGAGGAACCTGATCCGCTGAACTCAGAGGCTACTGACCAA CAGTTTGAATACAAGCGCCATGACGACGAGGACCTCTGGTAA |
Gene | >Pro_DTO070G2_2|g6522.t1 ATGGAGACAAATATCCATGAAGACCGGAATGAAGATTTTACCTGCGGACAGTGAGTTCTCCCCTCCAAAATTCTA GCTTTCAAGGCTTAGGATATCCCCCCGAGAAAATCAGTCACTTAAAATTCTAGATGCGGTGGATCTGGCCATATG ACTCGTCAGTGCCCGAATGCCTCTCTTCCTCTGAGACAGAGAGACAGCAATGCAGGGTAAGTTGGTCCTACACTT TCCATGTCACATTCTGCCAGTCCATCTAACCAATGCTAAAATATAGTGATGCCTATGGCAACTACGGCAACGACA ATGGTGGAGGACATGGTGATTACTCCGGTGGTGGCGGTGACCGCGCTTGCTACAACTGCGGCCAAGAAGGGTAAG TCGTTGATATCTGTGTACTTGCCAAATTTTACTGACAACAATGCAGCCATAGCAAAGCCGACTGTACCGAGCCTC GCAAGATGGGGGCATGCTTCAACTGTGGCCAGGACGGGTGAGTTATTATTGAACATCTTGTGTATTACGGCGTTA ATTATTCTCTTGAAACAGTCACTCCAAGGCCGAATGCACCGAGCCTCGCAAGATGGGCGCTTGCTTCAACTGTGG CGAAGAAGGGTGAGTAACTGCTGGGCGTTTTATACTTTAGTTTGCTAATTGGCTCCAAATACAGTCACTCCAAGT CCGAATGTCCTAAGCCTCGCGTGTTCAGGGGTACCTGCCGTATCTGCGAAAAGGAAGGCCACCCAGCGGTTGATT GTCCTGAGAGACCCCCCGATGTTTGCAAGAACTGCCAGGCCCAAGGCCACAAGACGATGGAGTGCAAGGAGAATC GCAAGTTCGATCTCAACCTTGTTGCTGACATGCTACCCCAAGAAGGTTGGGCTGCAATGAAGAAAGCCAGTGACG AAAGGGATCTTGATGATTTCCGAGAGGTACCAAAAATCCATACGTACCTTGAAAGTTTCGAACTTTGGCTGACCT AACTCCAGGCACTTAAAATCTACTCCAAGGCAGTCCCCAATGCCACCTGGGCAGACATTGAGAAGAAGATGCGAG AGGATAATTTCAACATCTACATCATTGCTATGGTAATCAATCATCATCGTTCTGATACTTGGGGATGAATCGCTA ATGAATGAATTTTAATTATAGGAGGCTGAAGTTGACGATGTCATGAGCCTTATCGATCTTCAGGGAGTACTTGAC CGTGAGTACGTGATTGGATTCTTTTTCAACCCCAAGGCGTCGCGTGGCCACCTCCGAGATCGTTGGCCTGCAGAT GCCGAGGAGAACCTAGAGCGCATGAAGAGCGCCGGTATTCCCTACGAGCGCAAGGTGCCTAAGTGCCTGAACTGT GGAGGTAAGTGTTTACTTTGAAGATTCCTTATAATATTGCTAAATTCTGTTTAGAGTTGGGACATATCTCCCGCA GTTGCAAGGAGGAGCGCGCCGAGGGCAATGATCGTGTGGAAATCAAGTGCTCAAACTGTGAGGGAGCTGGACACC GCGTACGCGATTGCAGACAGCAGCGCAAGCACAAGCATGGTTGCCGTAACTGCGGGTATGTGGCTGTGGTGCAAA CAACGAACTGGATAATGCTGACTTTTATGAAGATCTATTGAGCATATTGCTTCTGACTGCACCGAGCCCCGATCT GCGGCTGGTGTTGAATGCCGGAGATGCAACGAAAGTAAGACCTTGCCCAAGATGATTCAAATATTTCATGATGCT AATGTATCTATTTCAGCTGGCCACTTTGCCAAAGATTGCCCCACTGTTGCTGACCGTGGCCCTCGCACCTGCCGC AATTGCGGGTATGTTAAAATATCATAGCCCCTGCGATTGTCGCTGATTCTAACATCAATACAGATCCGAAGACCA CATCGCTCGCGATTGTGATCAACCTCGTGACGTTTCCACTGTTACCTGCCGCAACTGCGAAAAGAGTAAGTGCGA TGCATGCCCCAAAGATTCTTGGAAACACAACTGACAACTGCTATTTTAGCCGGACATTACTCTCGTGATTGTGAT CAGCCGAAAGATTGGTCGAAGGTTCAGTGCAAGAACTGCGGAGAAAGTGAGTTGATACATGCGTTTTTAATACTG AGTTAGTCCGCTAACAATCCTTAGTGGGTCACACTGTTGTCCGTTGCCGCCAGCCGCCTAAGGAGGAAGAGCCTC AAGACGAACCTACTTTCTCCCCCGGCTCTCCCAAGCGCGAGGAACCTGATCCGCTGAACTCAGAGGCTACTGACC AACAGTTTGAATACAAGCGCCATGACGACGAGGACCTCTGGTAA |