© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g6497.t1 |
| Gene name | |
| Location | scaffold_09:655389..657180 |
| Strand | + |
| Gene length (bp) | 1791 |
| Transcript length (bp) | 1677 |
| Coding sequence length (bp) | 1677 |
| Protein length (aa) | 559 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00262 | Calreticulin | Calreticulin family | 4.2E-172 | 47 | 413 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006457 | protein folding | Yes |
| GO:0005783 | endoplasmic reticulum | Yes |
| GO:0005509 | calcium ion binding | Yes |
| GO:0051082 | unfolded protein binding | Yes |
| GO:0008150 | biological_process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0005515 | protein binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043229 | intracellular organelle | No |
| GO:0046872 | metal ion binding | No |
| GO:0009987 | cellular process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0043167 | ion binding | No |
| GO:0043226 | organelle | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 490 | 512 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g6497.t1 MRFNTALTSALVSSASLMGYAHAEEETADTTVIEKPTFTPTSLKAPFLEQFTDDWESRWKPSHAKKDDKSEDEWA YVGEWAVEEPSVFKGIEGDKGLVVKNAAAHHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYLKLLQENKK LHQEEFSNATPYVIMFGPDKCGATNKVHFIFRHKNPKTGEYEEKHLKTPPVARTNKVTSLYTLIVNPDQTFEILI NGDSAKNGSLLEDFNPPVNPEKEIDDPKDSKPADWVDEIKIADPEATKPADWDEDAPFEILDEEATQPADWLEDE PESIPDPEAEKPEDWDDEEDGDWLAPTVPNPKCAEVSGCGPWTRPLIKNPEYKGKWEAPLIDNPAYKGVWAPRKI KNPAYFEDKTPSNLEPMGAIGFEIWTMQNDILFDNLYIGHSIEDAEKLRQETFDVKFPIEEAEEEASKPKPEVKQ EDTTVTFQEDPVAFVRQKVNHFVDLAKEDPINAVKTLPEVAGGLGALLLTMILIIVGAIGASSPAAPTEKKGKQP AGAPKEKKEEAVTSSAETSKGGATKRTTRSSAE* |
| Coding | >Pro_DTO070G2_2|g6497.t1 ATGCGCTTTAACACTGCGTTGACATCTGCTCTGGTCTCCTCCGCCAGCCTCATGGGCTACGCCCATGCGGAGGAG GAGACTGCGGATACCACCGTCATTGAAAAGCCTACCTTCACTCCTACTAGCCTTAAAGCTCCTTTCCTGGAGCAA TTCACAGACGACTGGGAGTCTCGGTGGAAGCCTTCTCACGCAAAGAAGGATGACAAGTCTGAGGATGAGTGGGCT TACGTTGGTGAATGGGCAGTTGAGGAGCCCTCCGTCTTCAAGGGTATCGAGGGAGACAAGGGTCTGGTCGTGAAG AACGCTGCTGCCCACCATGCCATCTCCGCCAAGTTCCCGAAGAAGATTGACAACAAGGGCAAGACCCTGGTGGTT CAGTACGAGGTCAAGCCGCAAAACTCCCTGGTTTGCGGCGGTGCCTACCTTAAGCTTCTCCAAGAGAACAAGAAG CTCCACCAGGAGGAGTTCTCCAACGCCACTCCCTATGTCATCATGTTCGGACCTGACAAGTGCGGTGCCACTAAT AAGGTTCACTTCATCTTCCGCCACAAGAACCCCAAGACCGGCGAGTACGAAGAGAAGCACCTCAAGACTCCTCCC GTGGCCCGCACCAACAAGGTCACCTCCCTCTACACCCTGATCGTCAACCCCGATCAGACCTTTGAGATCCTGATC AATGGCGACTCTGCCAAGAACGGTAGCCTCCTCGAGGACTTCAACCCTCCCGTCAACCCTGAGAAGGAGATTGAT GATCCCAAGGACTCTAAGCCCGCCGACTGGGTCGATGAGATTAAGATCGCCGACCCCGAAGCCACCAAGCCCGCC GACTGGGATGAAGATGCTCCTTTCGAGATCCTCGATGAGGAGGCCACCCAGCCCGCCGACTGGCTGGAGGATGAG CCCGAGAGTATCCCCGACCCCGAGGCTGAGAAGCCCGAGGATTGGGATGACGAGGAGGATGGAGACTGGCTCGCT CCCACTGTCCCTAACCCCAAGTGTGCCGAAGTCTCTGGCTGTGGCCCTTGGACCCGCCCTCTGATCAAGAACCCC GAGTACAAGGGCAAGTGGGAGGCCCCTCTCATCGACAACCCTGCCTACAAGGGTGTCTGGGCCCCCCGTAAGATC AAGAACCCCGCCTACTTTGAGGATAAGACTCCATCCAACCTTGAGCCCATGGGCGCTATTGGCTTCGAAATCTGG ACCATGCAGAATGATATTCTGTTCGACAACCTCTACATTGGTCACTCCATTGAGGATGCTGAGAAGCTCCGCCAG GAGACCTTCGATGTCAAGTTCCCCATCGAGGAGGCTGAGGAGGAGGCTTCTAAGCCCAAGCCCGAGGTCAAGCAA GAGGATACCACTGTCACCTTCCAGGAGGATCCTGTTGCCTTTGTCCGCCAGAAGGTCAACCACTTCGTTGATCTG GCCAAGGAGGACCCCATCAACGCTGTCAAGACCCTCCCTGAGGTGGCTGGTGGCCTGGGTGCGCTCCTCTTGACT ATGATCCTCATCATTGTGGGTGCCATTGGTGCTAGCAGCCCTGCCGCCCCGACCGAGAAGAAGGGCAAGCAGCCC GCCGGTGCTCCCAAGGAGAAGAAGGAAGAGGCTGTCACCTCCTCCGCTGAGACTAGCAAGGGCGGTGCCACCAAG CGCACCACCCGATCCTCGGCCGAGTAA |
| Transcript | >Pro_DTO070G2_2|g6497.t1 ATGCGCTTTAACACTGCGTTGACATCTGCTCTGGTCTCCTCCGCCAGCCTCATGGGCTACGCCCATGCGGAGGAG GAGACTGCGGATACCACCGTCATTGAAAAGCCTACCTTCACTCCTACTAGCCTTAAAGCTCCTTTCCTGGAGCAA TTCACAGACGACTGGGAGTCTCGGTGGAAGCCTTCTCACGCAAAGAAGGATGACAAGTCTGAGGATGAGTGGGCT TACGTTGGTGAATGGGCAGTTGAGGAGCCCTCCGTCTTCAAGGGTATCGAGGGAGACAAGGGTCTGGTCGTGAAG AACGCTGCTGCCCACCATGCCATCTCCGCCAAGTTCCCGAAGAAGATTGACAACAAGGGCAAGACCCTGGTGGTT CAGTACGAGGTCAAGCCGCAAAACTCCCTGGTTTGCGGCGGTGCCTACCTTAAGCTTCTCCAAGAGAACAAGAAG CTCCACCAGGAGGAGTTCTCCAACGCCACTCCCTATGTCATCATGTTCGGACCTGACAAGTGCGGTGCCACTAAT AAGGTTCACTTCATCTTCCGCCACAAGAACCCCAAGACCGGCGAGTACGAAGAGAAGCACCTCAAGACTCCTCCC GTGGCCCGCACCAACAAGGTCACCTCCCTCTACACCCTGATCGTCAACCCCGATCAGACCTTTGAGATCCTGATC AATGGCGACTCTGCCAAGAACGGTAGCCTCCTCGAGGACTTCAACCCTCCCGTCAACCCTGAGAAGGAGATTGAT GATCCCAAGGACTCTAAGCCCGCCGACTGGGTCGATGAGATTAAGATCGCCGACCCCGAAGCCACCAAGCCCGCC GACTGGGATGAAGATGCTCCTTTCGAGATCCTCGATGAGGAGGCCACCCAGCCCGCCGACTGGCTGGAGGATGAG CCCGAGAGTATCCCCGACCCCGAGGCTGAGAAGCCCGAGGATTGGGATGACGAGGAGGATGGAGACTGGCTCGCT CCCACTGTCCCTAACCCCAAGTGTGCCGAAGTCTCTGGCTGTGGCCCTTGGACCCGCCCTCTGATCAAGAACCCC GAGTACAAGGGCAAGTGGGAGGCCCCTCTCATCGACAACCCTGCCTACAAGGGTGTCTGGGCCCCCCGTAAGATC AAGAACCCCGCCTACTTTGAGGATAAGACTCCATCCAACCTTGAGCCCATGGGCGCTATTGGCTTCGAAATCTGG ACCATGCAGAATGATATTCTGTTCGACAACCTCTACATTGGTCACTCCATTGAGGATGCTGAGAAGCTCCGCCAG GAGACCTTCGATGTCAAGTTCCCCATCGAGGAGGCTGAGGAGGAGGCTTCTAAGCCCAAGCCCGAGGTCAAGCAA GAGGATACCACTGTCACCTTCCAGGAGGATCCTGTTGCCTTTGTCCGCCAGAAGGTCAACCACTTCGTTGATCTG GCCAAGGAGGACCCCATCAACGCTGTCAAGACCCTCCCTGAGGTGGCTGGTGGCCTGGGTGCGCTCCTCTTGACT ATGATCCTCATCATTGTGGGTGCCATTGGTGCTAGCAGCCCTGCCGCCCCGACCGAGAAGAAGGGCAAGCAGCCC GCCGGTGCTCCCAAGGAGAAGAAGGAAGAGGCTGTCACCTCCTCCGCTGAGACTAGCAAGGGCGGTGCCACCAAG CGCACCACCCGATCCTCGGCCGAGTAA |
| Gene | >Pro_DTO070G2_2|g6497.t1 ATGCGCTTTAACACTGCGTTGACATCTGCTCTGGTCTCCTCCGCCAGCCTCATGGGCTACGCCCATGCGGAGGAG GAGACTGCGGATACCACCGTCATTGAAAAGCCTACCTTCACTGTATGTATCTGAAACGCTCCCTCTTCGCTCACT TTGCTAACTCCCGCAAGCCTACTAGCCTTAAAGCTCCTTTCCTGGAGCAATTCACAGACGACTGGGAGTCTCGGT GGAAGCCTTCTCACGCAAAGAAGGATGACAAGTCTGAGGATGAGTGGGCTTACGTTGGTGAATGGGCAGTTGAGG AGCCCTCCGTCTTCAAGGGTATCGAGGGAGACAAGGGTCTGGTCGTGAAGAACGCTGCTGCCCACCATGCCATCT CCGCCAAGTTCCCGAAGAAGATTGACAACAAGGGCAAGACCCTGGTGGTTCAGTACGAGGTCAAGCCGCAAAGTG AGTTATGCCTTTCTACATTTGTTCGAGATCTTATATGCTGACTGGAATTGTCCTGTGTTAGACTCCCTGGTTTGC GGCGGTGCCTACCTTAAGCTTCTCCAAGAGAACAAGAAGCTCCACCAGGAGGAGTTCTCCAACGCCACTCCCTAT GTCATCATGTTCGGACCTGACAAGTGCGGTGCCACTAATAAGGTTCACTTCATCTTCCGCCACAAGAACCCCAAG ACCGGCGAGTACGAAGAGAAGCACCTCAAGACTCCTCCCGTGGCCCGCACCAACAAGGTCACCTCCCTCTACACC CTGATCGTCAACCCCGATCAGACCTTTGAGATCCTGATCAATGGCGACTCTGCCAAGAACGGTAGCCTCCTCGAG GACTTCAACCCTCCCGTCAACCCTGAGAAGGAGATTGATGATCCCAAGGACTCTAAGCCCGCCGACTGGGTCGAT GAGATTAAGATCGCCGACCCCGAAGCCACCAAGCCCGCCGACTGGGATGAAGATGCTCCTTTCGAGATCCTCGAT GAGGAGGCCACCCAGCCCGCCGACTGGCTGGAGGATGAGCCCGAGAGTATCCCCGACCCCGAGGCTGAGAAGCCC GAGGATTGGGATGACGAGGAGGATGGAGACTGGCTCGCTCCCACTGTCCCTAACCCCAAGTGTGCCGAAGTCTCT GGCTGTGGCCCTTGGACCCGCCCTCTGATCAAGAACCCCGAGTACAAGGGCAAGTGGGAGGCCCCTCTCATCGAC AACCCTGCCTACAAGGGTGTCTGGGCCCCCCGTAAGATCAAGAACCCCGCCTACTTTGAGGATAAGACTCCATCC AACCTTGAGCCCATGGGCGCTATTGGCTTCGAAATCTGGACCATGCAGAATGATATTCTGTTCGACAACCTCTAC ATTGGTCACTCCATTGAGGATGCTGAGAAGCTCCGCCAGGAGACCTTCGATGTCAAGTTCCCCATCGAGGAGGCT GAGGAGGAGGCTTCTAAGCCCAAGCCCGAGGTCAAGCAAGAGGATACCACTGTCACCTTCCAGGAGGATCCTGTT GCCTTTGTCCGCCAGAAGGTCAACCACTTCGTTGATCTGGCCAAGGAGGACCCCATCAACGCTGTCAAGACCCTC CCTGAGGTGGCTGGTGGCCTGGGTGCGCTCCTCTTGACTATGATCCTCATCATTGTGGGTGCCATTGGTGCTAGC AGCCCTGCCGCCCCGACCGAGAAGAAGGGCAAGCAGCCCGCCGGTGCTCCCAAGGAGAAGAAGGAAGAGGCTGTC ACCTCCTCCGCTGAGACTAGCAAGGGCGGTGCCACCAAGCGCACCACCCGATCCTCGGCCGAGTAA |