© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g6264.t1 |
| Gene name | |
| Location | scaffold_09:57425..57947 |
| Strand | - |
| Gene length (bp) | 522 |
| Transcript length (bp) | 522 |
| Coding sequence length (bp) | 522 |
| Protein length (aa) | 174 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03403 | PAF-AH_p_II | Platelet-activating factor acetylhydrolase, isoform II | 3.0E-06 | 114 | 150 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016042 | lipid catabolic process | Yes |
| GO:0003847 | 1-alkyl-2-acetylglycerophosphocholine esterase activity | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0052689 | carboxylic ester hydrolase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g6264.t1 MLLICRLLPIVAMSISAVVIPSPPGQYDVFYNTAKMIEKTRVDPFDPKNGSRAVMTSVFAPTHCKIDLEKINYLP PATAEYYSDLYSALGLPNGTIQSISFQACPEPPKGRHLQFSVVIFSPALGTTRLFYNAIAQAVASAGYIVVSIDH PYDAEFLEFPDGRVVTAANITDA* |
| Coding | >Pro_DTO070G2_2|g6264.t1 ATGCTTCTCATTTGTCGTCTCCTGCCCATCGTGGCTATGTCCATCTCTGCAGTGGTGATCCCCAGTCCACCCGGA CAATACGACGTGTTCTACAACACGGCGAAAATGATCGAAAAGACCAGAGTCGACCCGTTTGATCCCAAGAACGGA TCGCGTGCAGTGATGACTTCGGTCTTCGCCCCAACCCACTGCAAAATCGATCTCGAGAAGATAAACTACCTGCCC CCCGCAACAGCCGAATACTACTCTGACCTATACAGCGCGCTGGGACTTCCCAACGGGACTATCCAATCCATCTCG TTCCAAGCGTGCCCAGAGCCGCCGAAAGGCCGCCACCTCCAGTTTTCCGTTGTGATCTTCTCGCCTGCTCTTGGC ACGACCCGCCTGTTCTACAATGCCATTGCACAGGCCGTCGCCAGCGCCGGGTATATCGTGGTGTCTATTGACCAT CCCTATGATGCCGAGTTCCTCGAGTTTCCGGACGGAAGAGTCGTGACTGCCGCAAATATCACTGACGCGTAG |
| Transcript | >Pro_DTO070G2_2|g6264.t1 ATGCTTCTCATTTGTCGTCTCCTGCCCATCGTGGCTATGTCCATCTCTGCAGTGGTGATCCCCAGTCCACCCGGA CAATACGACGTGTTCTACAACACGGCGAAAATGATCGAAAAGACCAGAGTCGACCCGTTTGATCCCAAGAACGGA TCGCGTGCAGTGATGACTTCGGTCTTCGCCCCAACCCACTGCAAAATCGATCTCGAGAAGATAAACTACCTGCCC CCCGCAACAGCCGAATACTACTCTGACCTATACAGCGCGCTGGGACTTCCCAACGGGACTATCCAATCCATCTCG TTCCAAGCGTGCCCAGAGCCGCCGAAAGGCCGCCACCTCCAGTTTTCCGTTGTGATCTTCTCGCCTGCTCTTGGC ACGACCCGCCTGTTCTACAATGCCATTGCACAGGCCGTCGCCAGCGCCGGGTATATCGTGGTGTCTATTGACCAT CCCTATGATGCCGAGTTCCTCGAGTTTCCGGACGGAAGAGTCGTGACTGCCGCAAATATCACTGACGCGTAG |
| Gene | >Pro_DTO070G2_2|g6264.t1 ATGCTTCTCATTTGTCGTCTCCTGCCCATCGTGGCTATGTCCATCTCTGCAGTGGTGATCCCCAGTCCACCCGGA CAATACGACGTGTTCTACAACACGGCGAAAATGATCGAAAAGACCAGAGTCGACCCGTTTGATCCCAAGAACGGA TCGCGTGCAGTGATGACTTCGGTCTTCGCCCCAACCCACTGCAAAATCGATCTCGAGAAGATAAACTACCTGCCC CCCGCAACAGCCGAATACTACTCTGACCTATACAGCGCGCTGGGACTTCCCAACGGGACTATCCAATCCATCTCG TTCCAAGCGTGCCCAGAGCCGCCGAAAGGCCGCCACCTCCAGTTTTCCGTTGTGATCTTCTCGCCTGCTCTTGGC ACGACCCGCCTGTTCTACAATGCCATTGCACAGGCCGTCGCCAGCGCCGGGTATATCGTGGTGTCTATTGACCAT CCCTATGATGCCGAGTTCCTCGAGTTTCCGGACGGAAGAGTCGTGACTGCCGCAAATATCACTGACGCGTAG |