© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g5870.t1 |
| Gene name | |
| Location | scaffold_08:32848..33884 |
| Strand | + |
| Gene length (bp) | 1036 |
| Transcript length (bp) | 744 |
| Coding sequence length (bp) | 744 |
| Protein length (aa) | 248 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00098 | zf-CCHC | Zinc knuckle | 9.3E-04 | 6 | 22 |
| PF00098 | zf-CCHC | Zinc knuckle | 3.1E-04 | 27 | 42 |
| PF00098 | zf-CCHC | Zinc knuckle | 4.0E-06 | 51 | 66 |
| PF00098 | zf-CCHC | Zinc knuckle | 2.6E-07 | 77 | 93 |
| PF00098 | zf-CCHC | Zinc knuckle | 9.7E-07 | 135 | 150 |
| PF00098 | zf-CCHC | Zinc knuckle | 2.6E-07 | 155 | 170 |
| PF00098 | zf-CCHC | Zinc knuckle | 3.2E-07 | 183 | 198 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 1.6E-01 | 5 | 22 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 7.6E-01 | 26 | 42 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 7.2E-01 | 52 | 66 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 7.4E+00 | 78 | 92 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 6.9E-01 | 156 | 170 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 3.3E+00 | 182 | 198 |
| PF13917 | zf-CCHC_3 | Zinc knuckle | 1.1E-01 | 73 | 95 |
| PF13917 | zf-CCHC_3 | Zinc knuckle | 3.9E-02 | 179 | 202 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0005488 | binding | No |
| GO:0043169 | cation binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, CCHC-type |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g5870.t1 MMLSRRACYKCGTIGHYAEVCSSTERLCYNCKQPGHESSACPLPRTTETKQCYNCQGLGHVQADCPTLRLNGGAN SRCYNCSQPGHLARNCPNPTAPGAGAPPTGPAAGRGAGGARGGFQGGFRGGFSGYPRAATCYKCGGPNHFARDCQ AQAMKCYACGKLGHISRDCTAPNGGPLSSAGKVCYKCAQAGHISRDCPTNEGAAAPLAAVEVTPVAATPVVAAPA VVAVETVTEANVPTAAPTTAVA* |
| Coding | >Pro_DTO070G2_2|g5870.t1 ATGATGTTGTCTCGTCGCGCATGCTACAAGTGTGGCACCATTGGCCACTACGCTGAGGTCTGCTCTTCCACCGAG CGTCTCTGCTATAACTGCAAGCAGCCCGGCCACGAGTCGAGCGCCTGCCCTCTGCCCCGTACCACCGAGACCAAG CAGTGCTATAACTGCCAGGGCCTCGGTCACGTCCAGGCTGACTGCCCTACCCTGCGCCTGAATGGTGGTGCCAAC AGCCGCTGCTACAACTGCAGCCAGCCCGGCCACCTTGCCCGCAACTGCCCCAACCCCACTGCTCCCGGAGCTGGT GCTCCCCCTACCGGTCCCGCCGCTGGCCGCGGTGCCGGTGGTGCTCGTGGCGGTTTCCAGGGTGGATTCCGCGGT GGATTCAGTGGCTACCCCCGCGCCGCAACCTGCTACAAGTGCGGTGGTCCCAACCACTTCGCACGTGACTGCCAG GCTCAGGCCATGAAGTGCTACGCCTGCGGCAAGCTCGGCCACATCTCGCGTGACTGCACCGCGCCCAACGGTGGT CCCCTCAGCTCCGCCGGTAAGGTCTGCTACAAGTGCGCCCAGGCCGGCCACATCTCCCGCGACTGCCCTACCAAC GAGGGTGCCGCTGCTCCTCTCGCTGCCGTTGAGGTTACACCCGTTGCTGCTACCCCCGTTGTGGCTGCCCCTGCT GTGGTCGCTGTTGAGACTGTCACTGAGGCTAACGTCCCTACTGCGGCTCCTACTACTGCAGTCGCTTAA |
| Transcript | >Pro_DTO070G2_2|g5870.t1 ATGATGTTGTCTCGTCGCGCATGCTACAAGTGTGGCACCATTGGCCACTACGCTGAGGTCTGCTCTTCCACCGAG CGTCTCTGCTATAACTGCAAGCAGCCCGGCCACGAGTCGAGCGCCTGCCCTCTGCCCCGTACCACCGAGACCAAG CAGTGCTATAACTGCCAGGGCCTCGGTCACGTCCAGGCTGACTGCCCTACCCTGCGCCTGAATGGTGGTGCCAAC AGCCGCTGCTACAACTGCAGCCAGCCCGGCCACCTTGCCCGCAACTGCCCCAACCCCACTGCTCCCGGAGCTGGT GCTCCCCCTACCGGTCCCGCCGCTGGCCGCGGTGCCGGTGGTGCTCGTGGCGGTTTCCAGGGTGGATTCCGCGGT GGATTCAGTGGCTACCCCCGCGCCGCAACCTGCTACAAGTGCGGTGGTCCCAACCACTTCGCACGTGACTGCCAG GCTCAGGCCATGAAGTGCTACGCCTGCGGCAAGCTCGGCCACATCTCGCGTGACTGCACCGCGCCCAACGGTGGT CCCCTCAGCTCCGCCGGTAAGGTCTGCTACAAGTGCGCCCAGGCCGGCCACATCTCCCGCGACTGCCCTACCAAC GAGGGTGCCGCTGCTCCTCTCGCTGCCGTTGAGGTTACACCCGTTGCTGCTACCCCCGTTGTGGCTGCCCCTGCT GTGGTCGCTGTTGAGACTGTCACTGAGGCTAACGTCCCTACTGCGGCTCCTACTACTGCAGTCGCTTAA |
| Gene | >Pro_DTO070G2_2|g5870.t1 ATGATGTTGTCTCGTCGCGCATGCTACAAGTGTGGCACCATTGGCCACTACGCTGGTTAGTATAGCTGGAGTGCT ATATCTGGGATCAAACTAATTCCTCGGTAGAGGTCTGCTCTTCCACCGAGCGTCTCTGCTATAACTGTGCGTGAA TATCTCCCCGAGAGGTCATAACCTTATCTTACTTGGCGCTAATTTGTTTTATCTCATAGGCAAGCAGCCCGGTAT GTTCAACCATGAGTCATAATACTCAAAACAAGCTTCTAAGTCTTCATATAGGCCACGAGTCGAGCGCCTGCCCTC TGCCCCGTACCACCGAGAGTAAGCGATCACTCAATATCAACTGTGCTGCCATCGCAGGTTGCTAACACCATCTAG CCAAGCAGTGCTATAACTGCCAGGGCCTCGGTCACGTCCAGGCTGACTGCCCTACCCTGCGCCTGAATGGTGGTG CCAACAGCCGCTGCTACAACTGCAGCCAGCCCGGCCACCTTGCCGTAAGTTTCATCCCCTAAGCCCAGGTCTGCA ACCTTTGAGGCGGTTACTAACTCTACTCCAGCGCAACTGCCCCAACCCCACTGCTCCCGGAGCTGGTGCTCCCCC TACCGGTCCCGCCGCTGGCCGCGGTGCCGGTGGTGCTCGTGGCGGTTTCCAGGGTGGATTCCGCGGTGGATTCAG TGGCTACCCCCGCGCCGCAACCTGCTACAAGTGCGGTGGTCCCAACCACTTCGCACGTGACTGCCAGGCTCAGGC CATGAAGTGCTACGCCTGCGGCAAGCTCGGCCACATCTCGCGTGACTGCACCGCGCCCAACGGTGGTCCCCTCAG CTCCGCCGGTAAGGTCTGCTACAAGTGCGCCCAGGCCGGCCACATCTCCCGCGACTGCCCTACCAACGAGGGTGC CGCTGCTCCTCTCGCTGCCGTTGAGGTTACACCCGTTGCTGCTACCCCCGTTGTGGCTGCCCCTGCTGTGGTCGC TGTTGAGACTGTCACTGAGGCTAACGTCCCTACTGCGGCTCCTACTACTGCAGTCGCTTAA |