Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO070G2_2|g5870.t1
Gene name
Locationscaffold_08:32848..33884
Strand+
Gene length (bp)1036
Transcript length (bp)744
Coding sequence length (bp)744
Protein length (aa) 248

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00098 zf-CCHC Zinc knuckle 9.3E-04 6 22
PF00098 zf-CCHC Zinc knuckle 3.1E-04 27 42
PF00098 zf-CCHC Zinc knuckle 4.0E-06 51 66
PF00098 zf-CCHC Zinc knuckle 2.6E-07 77 93
PF00098 zf-CCHC Zinc knuckle 9.7E-07 135 150
PF00098 zf-CCHC Zinc knuckle 2.6E-07 155 170
PF00098 zf-CCHC Zinc knuckle 3.2E-07 183 198
PF14392 zf-CCHC_4 Zinc knuckle 1.6E-01 5 22
PF14392 zf-CCHC_4 Zinc knuckle 7.6E-01 26 42
PF14392 zf-CCHC_4 Zinc knuckle 7.2E-01 52 66
PF14392 zf-CCHC_4 Zinc knuckle 7.4E+00 78 92
PF14392 zf-CCHC_4 Zinc knuckle 6.9E-01 156 170
PF14392 zf-CCHC_4 Zinc knuckle 3.3E+00 182 198
PF13917 zf-CCHC_3 Zinc knuckle 1.1E-01 73 95
PF13917 zf-CCHC_3 Zinc knuckle 3.9E-02 179 202

GO

GO Term Description Terminal node
GO:0008270 zinc ion binding Yes
GO:0003676 nucleic acid binding Yes
GO:0005488 binding No
GO:0043169 cation binding No
GO:1901363 heterocyclic compound binding No
GO:0046914 transition metal ion binding No
GO:0043167 ion binding No
GO:0046872 metal ion binding No
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 24 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Zinc finger, CCHC-type

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO070G2_2|g5870.t1
MMLSRRACYKCGTIGHYAEVCSSTERLCYNCKQPGHESSACPLPRTTETKQCYNCQGLGHVQADCPTLRLNGGAN
SRCYNCSQPGHLARNCPNPTAPGAGAPPTGPAAGRGAGGARGGFQGGFRGGFSGYPRAATCYKCGGPNHFARDCQ
AQAMKCYACGKLGHISRDCTAPNGGPLSSAGKVCYKCAQAGHISRDCPTNEGAAAPLAAVEVTPVAATPVVAAPA
VVAVETVTEANVPTAAPTTAVA*
Coding >Pro_DTO070G2_2|g5870.t1
ATGATGTTGTCTCGTCGCGCATGCTACAAGTGTGGCACCATTGGCCACTACGCTGAGGTCTGCTCTTCCACCGAG
CGTCTCTGCTATAACTGCAAGCAGCCCGGCCACGAGTCGAGCGCCTGCCCTCTGCCCCGTACCACCGAGACCAAG
CAGTGCTATAACTGCCAGGGCCTCGGTCACGTCCAGGCTGACTGCCCTACCCTGCGCCTGAATGGTGGTGCCAAC
AGCCGCTGCTACAACTGCAGCCAGCCCGGCCACCTTGCCCGCAACTGCCCCAACCCCACTGCTCCCGGAGCTGGT
GCTCCCCCTACCGGTCCCGCCGCTGGCCGCGGTGCCGGTGGTGCTCGTGGCGGTTTCCAGGGTGGATTCCGCGGT
GGATTCAGTGGCTACCCCCGCGCCGCAACCTGCTACAAGTGCGGTGGTCCCAACCACTTCGCACGTGACTGCCAG
GCTCAGGCCATGAAGTGCTACGCCTGCGGCAAGCTCGGCCACATCTCGCGTGACTGCACCGCGCCCAACGGTGGT
CCCCTCAGCTCCGCCGGTAAGGTCTGCTACAAGTGCGCCCAGGCCGGCCACATCTCCCGCGACTGCCCTACCAAC
GAGGGTGCCGCTGCTCCTCTCGCTGCCGTTGAGGTTACACCCGTTGCTGCTACCCCCGTTGTGGCTGCCCCTGCT
GTGGTCGCTGTTGAGACTGTCACTGAGGCTAACGTCCCTACTGCGGCTCCTACTACTGCAGTCGCTTAA
Transcript >Pro_DTO070G2_2|g5870.t1
ATGATGTTGTCTCGTCGCGCATGCTACAAGTGTGGCACCATTGGCCACTACGCTGAGGTCTGCTCTTCCACCGAG
CGTCTCTGCTATAACTGCAAGCAGCCCGGCCACGAGTCGAGCGCCTGCCCTCTGCCCCGTACCACCGAGACCAAG
CAGTGCTATAACTGCCAGGGCCTCGGTCACGTCCAGGCTGACTGCCCTACCCTGCGCCTGAATGGTGGTGCCAAC
AGCCGCTGCTACAACTGCAGCCAGCCCGGCCACCTTGCCCGCAACTGCCCCAACCCCACTGCTCCCGGAGCTGGT
GCTCCCCCTACCGGTCCCGCCGCTGGCCGCGGTGCCGGTGGTGCTCGTGGCGGTTTCCAGGGTGGATTCCGCGGT
GGATTCAGTGGCTACCCCCGCGCCGCAACCTGCTACAAGTGCGGTGGTCCCAACCACTTCGCACGTGACTGCCAG
GCTCAGGCCATGAAGTGCTACGCCTGCGGCAAGCTCGGCCACATCTCGCGTGACTGCACCGCGCCCAACGGTGGT
CCCCTCAGCTCCGCCGGTAAGGTCTGCTACAAGTGCGCCCAGGCCGGCCACATCTCCCGCGACTGCCCTACCAAC
GAGGGTGCCGCTGCTCCTCTCGCTGCCGTTGAGGTTACACCCGTTGCTGCTACCCCCGTTGTGGCTGCCCCTGCT
GTGGTCGCTGTTGAGACTGTCACTGAGGCTAACGTCCCTACTGCGGCTCCTACTACTGCAGTCGCTTAA
Gene >Pro_DTO070G2_2|g5870.t1
ATGATGTTGTCTCGTCGCGCATGCTACAAGTGTGGCACCATTGGCCACTACGCTGGTTAGTATAGCTGGAGTGCT
ATATCTGGGATCAAACTAATTCCTCGGTAGAGGTCTGCTCTTCCACCGAGCGTCTCTGCTATAACTGTGCGTGAA
TATCTCCCCGAGAGGTCATAACCTTATCTTACTTGGCGCTAATTTGTTTTATCTCATAGGCAAGCAGCCCGGTAT
GTTCAACCATGAGTCATAATACTCAAAACAAGCTTCTAAGTCTTCATATAGGCCACGAGTCGAGCGCCTGCCCTC
TGCCCCGTACCACCGAGAGTAAGCGATCACTCAATATCAACTGTGCTGCCATCGCAGGTTGCTAACACCATCTAG
CCAAGCAGTGCTATAACTGCCAGGGCCTCGGTCACGTCCAGGCTGACTGCCCTACCCTGCGCCTGAATGGTGGTG
CCAACAGCCGCTGCTACAACTGCAGCCAGCCCGGCCACCTTGCCGTAAGTTTCATCCCCTAAGCCCAGGTCTGCA
ACCTTTGAGGCGGTTACTAACTCTACTCCAGCGCAACTGCCCCAACCCCACTGCTCCCGGAGCTGGTGCTCCCCC
TACCGGTCCCGCCGCTGGCCGCGGTGCCGGTGGTGCTCGTGGCGGTTTCCAGGGTGGATTCCGCGGTGGATTCAG
TGGCTACCCCCGCGCCGCAACCTGCTACAAGTGCGGTGGTCCCAACCACTTCGCACGTGACTGCCAGGCTCAGGC
CATGAAGTGCTACGCCTGCGGCAAGCTCGGCCACATCTCGCGTGACTGCACCGCGCCCAACGGTGGTCCCCTCAG
CTCCGCCGGTAAGGTCTGCTACAAGTGCGCCCAGGCCGGCCACATCTCCCGCGACTGCCCTACCAACGAGGGTGC
CGCTGCTCCTCTCGCTGCCGTTGAGGTTACACCCGTTGCTGCTACCCCCGTTGTGGCTGCCCCTGCTGTGGTCGC
TGTTGAGACTGTCACTGAGGCTAACGTCCCTACTGCGGCTCCTACTACTGCAGTCGCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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