Protein ID | Pro_DTO070G2_2|g5870.t1 |
Gene name | |
Location | scaffold_08:32848..33884 |
Strand | + |
Gene length (bp) | 1036 |
Transcript length (bp) | 744 |
Coding sequence length (bp) | 744 |
Protein length (aa) | 248 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00098 | zf-CCHC | Zinc knuckle | 9.3E-04 | 6 | 22 |
PF00098 | zf-CCHC | Zinc knuckle | 3.1E-04 | 27 | 42 |
PF00098 | zf-CCHC | Zinc knuckle | 4.0E-06 | 51 | 66 |
PF00098 | zf-CCHC | Zinc knuckle | 2.6E-07 | 77 | 93 |
PF00098 | zf-CCHC | Zinc knuckle | 9.7E-07 | 135 | 150 |
PF00098 | zf-CCHC | Zinc knuckle | 2.6E-07 | 155 | 170 |
PF00098 | zf-CCHC | Zinc knuckle | 3.2E-07 | 183 | 198 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 1.6E-01 | 5 | 22 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 7.6E-01 | 26 | 42 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 7.2E-01 | 52 | 66 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 7.4E+00 | 78 | 92 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 6.9E-01 | 156 | 170 |
PF14392 | zf-CCHC_4 | Zinc knuckle | 3.3E+00 | 182 | 198 |
PF13917 | zf-CCHC_3 | Zinc knuckle | 1.1E-01 | 73 | 95 |
PF13917 | zf-CCHC_3 | Zinc knuckle | 3.9E-02 | 179 | 202 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008270 | zinc ion binding | Yes |
GO:0003676 | nucleic acid binding | Yes |
GO:0005488 | binding | No |
GO:0043169 | cation binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0046914 | transition metal ion binding | No |
GO:0043167 | ion binding | No |
GO:0046872 | metal ion binding | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 24 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
Zinc finger, CCHC-type |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO070G2_2|g5870.t1 MMLSRRACYKCGTIGHYAEVCSSTERLCYNCKQPGHESSACPLPRTTETKQCYNCQGLGHVQADCPTLRLNGGAN SRCYNCSQPGHLARNCPNPTAPGAGAPPTGPAAGRGAGGARGGFQGGFRGGFSGYPRAATCYKCGGPNHFARDCQ AQAMKCYACGKLGHISRDCTAPNGGPLSSAGKVCYKCAQAGHISRDCPTNEGAAAPLAAVEVTPVAATPVVAAPA VVAVETVTEANVPTAAPTTAVA* |
Coding | >Pro_DTO070G2_2|g5870.t1 ATGATGTTGTCTCGTCGCGCATGCTACAAGTGTGGCACCATTGGCCACTACGCTGAGGTCTGCTCTTCCACCGAG CGTCTCTGCTATAACTGCAAGCAGCCCGGCCACGAGTCGAGCGCCTGCCCTCTGCCCCGTACCACCGAGACCAAG CAGTGCTATAACTGCCAGGGCCTCGGTCACGTCCAGGCTGACTGCCCTACCCTGCGCCTGAATGGTGGTGCCAAC AGCCGCTGCTACAACTGCAGCCAGCCCGGCCACCTTGCCCGCAACTGCCCCAACCCCACTGCTCCCGGAGCTGGT GCTCCCCCTACCGGTCCCGCCGCTGGCCGCGGTGCCGGTGGTGCTCGTGGCGGTTTCCAGGGTGGATTCCGCGGT GGATTCAGTGGCTACCCCCGCGCCGCAACCTGCTACAAGTGCGGTGGTCCCAACCACTTCGCACGTGACTGCCAG GCTCAGGCCATGAAGTGCTACGCCTGCGGCAAGCTCGGCCACATCTCGCGTGACTGCACCGCGCCCAACGGTGGT CCCCTCAGCTCCGCCGGTAAGGTCTGCTACAAGTGCGCCCAGGCCGGCCACATCTCCCGCGACTGCCCTACCAAC GAGGGTGCCGCTGCTCCTCTCGCTGCCGTTGAGGTTACACCCGTTGCTGCTACCCCCGTTGTGGCTGCCCCTGCT GTGGTCGCTGTTGAGACTGTCACTGAGGCTAACGTCCCTACTGCGGCTCCTACTACTGCAGTCGCTTAA |
Transcript | >Pro_DTO070G2_2|g5870.t1 ATGATGTTGTCTCGTCGCGCATGCTACAAGTGTGGCACCATTGGCCACTACGCTGAGGTCTGCTCTTCCACCGAG CGTCTCTGCTATAACTGCAAGCAGCCCGGCCACGAGTCGAGCGCCTGCCCTCTGCCCCGTACCACCGAGACCAAG CAGTGCTATAACTGCCAGGGCCTCGGTCACGTCCAGGCTGACTGCCCTACCCTGCGCCTGAATGGTGGTGCCAAC AGCCGCTGCTACAACTGCAGCCAGCCCGGCCACCTTGCCCGCAACTGCCCCAACCCCACTGCTCCCGGAGCTGGT GCTCCCCCTACCGGTCCCGCCGCTGGCCGCGGTGCCGGTGGTGCTCGTGGCGGTTTCCAGGGTGGATTCCGCGGT GGATTCAGTGGCTACCCCCGCGCCGCAACCTGCTACAAGTGCGGTGGTCCCAACCACTTCGCACGTGACTGCCAG GCTCAGGCCATGAAGTGCTACGCCTGCGGCAAGCTCGGCCACATCTCGCGTGACTGCACCGCGCCCAACGGTGGT CCCCTCAGCTCCGCCGGTAAGGTCTGCTACAAGTGCGCCCAGGCCGGCCACATCTCCCGCGACTGCCCTACCAAC GAGGGTGCCGCTGCTCCTCTCGCTGCCGTTGAGGTTACACCCGTTGCTGCTACCCCCGTTGTGGCTGCCCCTGCT GTGGTCGCTGTTGAGACTGTCACTGAGGCTAACGTCCCTACTGCGGCTCCTACTACTGCAGTCGCTTAA |
Gene | >Pro_DTO070G2_2|g5870.t1 ATGATGTTGTCTCGTCGCGCATGCTACAAGTGTGGCACCATTGGCCACTACGCTGGTTAGTATAGCTGGAGTGCT ATATCTGGGATCAAACTAATTCCTCGGTAGAGGTCTGCTCTTCCACCGAGCGTCTCTGCTATAACTGTGCGTGAA TATCTCCCCGAGAGGTCATAACCTTATCTTACTTGGCGCTAATTTGTTTTATCTCATAGGCAAGCAGCCCGGTAT GTTCAACCATGAGTCATAATACTCAAAACAAGCTTCTAAGTCTTCATATAGGCCACGAGTCGAGCGCCTGCCCTC TGCCCCGTACCACCGAGAGTAAGCGATCACTCAATATCAACTGTGCTGCCATCGCAGGTTGCTAACACCATCTAG CCAAGCAGTGCTATAACTGCCAGGGCCTCGGTCACGTCCAGGCTGACTGCCCTACCCTGCGCCTGAATGGTGGTG CCAACAGCCGCTGCTACAACTGCAGCCAGCCCGGCCACCTTGCCGTAAGTTTCATCCCCTAAGCCCAGGTCTGCA ACCTTTGAGGCGGTTACTAACTCTACTCCAGCGCAACTGCCCCAACCCCACTGCTCCCGGAGCTGGTGCTCCCCC TACCGGTCCCGCCGCTGGCCGCGGTGCCGGTGGTGCTCGTGGCGGTTTCCAGGGTGGATTCCGCGGTGGATTCAG TGGCTACCCCCGCGCCGCAACCTGCTACAAGTGCGGTGGTCCCAACCACTTCGCACGTGACTGCCAGGCTCAGGC CATGAAGTGCTACGCCTGCGGCAAGCTCGGCCACATCTCGCGTGACTGCACCGCGCCCAACGGTGGTCCCCTCAG CTCCGCCGGTAAGGTCTGCTACAAGTGCGCCCAGGCCGGCCACATCTCCCGCGACTGCCCTACCAACGAGGGTGC CGCTGCTCCTCTCGCTGCCGTTGAGGTTACACCCGTTGCTGCTACCCCCGTTGTGGCTGCCCCTGCTGTGGTCGC TGTTGAGACTGTCACTGAGGCTAACGTCCCTACTGCGGCTCCTACTACTGCAGTCGCTTAA |