© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g5410.t1 |
| Gene name | |
| Location | scaffold_07:16018..17540 |
| Strand | + |
| Gene length (bp) | 1522 |
| Transcript length (bp) | 1320 |
| Coding sequence length (bp) | 1320 |
| Protein length (aa) | 440 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00892 | EamA | EamA-like transporter family | 2.2E-07 | 130 | 209 |
| PF04142 | Nuc_sug_transp | Nucleotide-sugar transporter | 2.6E-09 | 141 | 216 |
| PF08449 | UAA | UAA transporter family | 1.0E-06 | 129 | 409 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015165 | pyrimidine nucleotide-sugar transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0000139 | Golgi membrane | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0016020 | membrane | Yes |
| GO:0090481 | pyrimidine nucleotide-sugar transmembrane transport | Yes |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:1901264 | carbohydrate derivative transport | No |
| GO:0015932 | nucleobase-containing compound transmembrane transporter activity | No |
| GO:0015780 | nucleotide-sugar transmembrane transport | No |
| GO:1901505 | carbohydrate derivative transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0098588 | bounding membrane of organelle | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0009987 | cellular process | No |
| GO:0031090 | organelle membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005338 | nucleotide-sugar transmembrane transporter activity | No |
| GO:0071702 | organic substance transport | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 24 | 19 |
| 2 | 52 | 74 | 22 |
| 3 | 165 | 187 | 22 |
| 4 | 194 | 216 | 22 |
| 5 | 251 | 273 | 22 |
| 6 | 294 | 316 | 22 |
| 7 | 336 | 355 | 19 |
| 8 | 376 | 398 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g5410.t1 MANHALIPLLVTMMLVTGVCNTILNKYQDMQCVRNCDSPDPSQRKLFEQPVIQTAVMFMGEMGCWLVVGLTFLYR QYIAPRLSSDPSPLLTGGYHPINGDDEGIDHEDDNIVDELDSDSRHPKPLPEDDSRIPLRGWKILLLAAPSSCDI AGTTLMNVGLLFVAASIYQMTRGALVLFVGLFSVLFLRRKLHLYQWSALFIVVLGVAIVGLSGALFSGDSDHDIT QDGSASNAVSHGLMQARVVARTPEAVQAIIGVLLIAAAQIFTATQFVLEEWILENYAMEPIHVVGWEGVFGFLVT VVGMVIMYLAVGRTDAGRYGYFDVKQGLHEVLNNRAVAISSLFIMISIGGFNFFGLSVTRTVSATSRSTIDTCRT LFIWIVSLGLGWETFKWLQVAGFALLVYGTFMFNDIVRPPLKACLPGDRREGEVLLPEGPIEHI* |
| Coding | >Pro_DTO070G2_2|g5410.t1 ATGGCGAACCATGCCCTCATTCCCCTCCTGGTCACGATGATGCTCGTGACTGGGGTGTGCAACACCATTCTCAAC AAGTATCAGGATATGCAATGTGTGCGAAACTGCGATTCCCCAGATCCCAGCCAGCGAAAGCTGTTCGAGCAGCCA GTCATTCAGACAGCCGTAATGTTTATGGGTGAAATGGGCTGTTGGCTAGTTGTCGGCTTAACCTTCCTCTACCGC CAATACATCGCACCGCGCCTATCCAGTGACCCCTCACCCCTCCTAACTGGCGGATATCACCCGATAAACGGCGAT GATGAAGGCATCGATCATGAGGATGACAACATAGTCGATGAACTCGACAGCGATAGCAGACACCCCAAGCCCCTA CCCGAAGATGACAGCCGCATCCCACTCCGCGGATGGAAGATCCTACTTCTTGCAGCGCCATCTAGCTGCGATATC GCCGGCACAACCCTCATGAACGTGGGTCTTCTCTTTGTGGCAGCCAGTATCTACCAGATGACCCGGGGTGCCCTG GTTCTATTTGTAGGCCTGTTCAGTGTCCTCTTCCTTCGCCGCAAGCTCCACTTATACCAGTGGAGTGCACTCTTC ATTGTCGTTCTAGGTGTGGCTATTGTGGGTCTTTCCGGAGCTCTATTCAGTGGAGATTCAGACCACGATATCACT CAGGATGGGAGTGCTAGCAATGCAGTCTCGCATGGTCTTATGCAGGCGCGTGTCGTTGCTCGGACCCCCGAGGCT GTCCAGGCTATCATTGGTGTGCTGCTTATTGCCGCAGCGCAGATCTTCACAGCCACACAATTTGTGTTGGAGGAG TGGATTTTGGAGAATTACGCCATGGAACCGATCCATGTTGTGGGTTGGGAAGGTGTGTTCGGATTTTTGGTTACT GTCGTTGGCATGGTGATCATGTATCTTGCTGTCGGACGGACCGATGCCGGCCGATATGGCTACTTTGATGTCAAG CAGGGATTGCACGAGGTTCTTAATAACCGTGCTGTTGCCATATCCAGCTTGTTTATCATGATCAGTATCGGTGGC TTCAACTTCTTCGGTCTGTCTGTCACCCGCACTGTGTCTGCTACCTCTCGTAGCACAATCGACACCTGCCGCACA CTCTTCATCTGGATTGTCTCGCTTGGACTCGGCTGGGAGACCTTCAAATGGCTCCAAGTTGCCGGATTCGCGCTT CTTGTCTATGGAACTTTCATGTTCAATGACATCGTCCGTCCTCCGCTCAAGGCTTGTTTGCCCGGTGACCGGAGA GAGGGAGAGGTGCTACTTCCCGAAGGCCCCATTGAGCATATCTGA |
| Transcript | >Pro_DTO070G2_2|g5410.t1 ATGGCGAACCATGCCCTCATTCCCCTCCTGGTCACGATGATGCTCGTGACTGGGGTGTGCAACACCATTCTCAAC AAGTATCAGGATATGCAATGTGTGCGAAACTGCGATTCCCCAGATCCCAGCCAGCGAAAGCTGTTCGAGCAGCCA GTCATTCAGACAGCCGTAATGTTTATGGGTGAAATGGGCTGTTGGCTAGTTGTCGGCTTAACCTTCCTCTACCGC CAATACATCGCACCGCGCCTATCCAGTGACCCCTCACCCCTCCTAACTGGCGGATATCACCCGATAAACGGCGAT GATGAAGGCATCGATCATGAGGATGACAACATAGTCGATGAACTCGACAGCGATAGCAGACACCCCAAGCCCCTA CCCGAAGATGACAGCCGCATCCCACTCCGCGGATGGAAGATCCTACTTCTTGCAGCGCCATCTAGCTGCGATATC GCCGGCACAACCCTCATGAACGTGGGTCTTCTCTTTGTGGCAGCCAGTATCTACCAGATGACCCGGGGTGCCCTG GTTCTATTTGTAGGCCTGTTCAGTGTCCTCTTCCTTCGCCGCAAGCTCCACTTATACCAGTGGAGTGCACTCTTC ATTGTCGTTCTAGGTGTGGCTATTGTGGGTCTTTCCGGAGCTCTATTCAGTGGAGATTCAGACCACGATATCACT CAGGATGGGAGTGCTAGCAATGCAGTCTCGCATGGTCTTATGCAGGCGCGTGTCGTTGCTCGGACCCCCGAGGCT GTCCAGGCTATCATTGGTGTGCTGCTTATTGCCGCAGCGCAGATCTTCACAGCCACACAATTTGTGTTGGAGGAG TGGATTTTGGAGAATTACGCCATGGAACCGATCCATGTTGTGGGTTGGGAAGGTGTGTTCGGATTTTTGGTTACT GTCGTTGGCATGGTGATCATGTATCTTGCTGTCGGACGGACCGATGCCGGCCGATATGGCTACTTTGATGTCAAG CAGGGATTGCACGAGGTTCTTAATAACCGTGCTGTTGCCATATCCAGCTTGTTTATCATGATCAGTATCGGTGGC TTCAACTTCTTCGGTCTGTCTGTCACCCGCACTGTGTCTGCTACCTCTCGTAGCACAATCGACACCTGCCGCACA CTCTTCATCTGGATTGTCTCGCTTGGACTCGGCTGGGAGACCTTCAAATGGCTCCAAGTTGCCGGATTCGCGCTT CTTGTCTATGGAACTTTCATGTTCAATGACATCGTCCGTCCTCCGCTCAAGGCTTGTTTGCCCGGTGACCGGAGA GAGGGAGAGGTGCTACTTCCCGAAGGCCCCATTGAGCATATCTGA |
| Gene | >Pro_DTO070G2_2|g5410.t1 ATGGCGAACCATGCCCTCATTCCCCTCCTGGTCACGATGATGCTCGTGACTGGGGTGTGCAACACCATTCTCAAC AAGTATCAGGTGCGTCCTTGATTCGATTCAAGCTACAAAGAAACACGAACTAATTGATTGGCCCGTCTCAAAAAG GATATGCAATGTGTGCGAAACTGCGATTCCCCAGATCCCAGCCAGCGAAAGCTGTTCGAGCAGCCAGTCATTCAG ACGTAGGCTCCACCCCGTGCCGATGATACAGCCTTACAACGCTAGCGATTAATGCTGACACCAGGCGGTAATGCA GAGCCGTAATGTTTATGGGTGAAATGGGCTGTTGGCTAGTTGTCGGCTTAACCTTCCTCTACCGCCAATACATCG CACCGCGCCTATCCAGTGACCCCTCACCCCTCCTAACTGGCGGATATCACCCGATAAACGGCGATGATGAAGGCA TCGATCATGAGGATGACAACATAGTCGATGAACTCGACAGCGATAGCAGACACCCCAAGCCCCTACCCGAAGATG ACAGCCGCATCCCACTCCGCGGATGGAAGATCCTACTTCTTGCAGCGCCATCTAGCTGCGATATCGCCGGCACAA CCCTCATGAACGTGGGTCTTCTCTTTGTGGCAGCCAGTATCTACCAGATGACCCGGGGTGCCCTGGTTCTATTTG TAGGCCTGTTCAGTGTCCTCTTCCTTCGCCGCAAGCTCCACTTATACCAGTGGAGTGCACTCTTCATTGTCGTTC TAGGTGTGGCTATTGTGGGTCTTTCCGGAGCTCTATTCAGTGGAGATTCAGACCACGATATCACTCAGGATGGGA GTGCTAGCAATGCAGTCTCGCATGGTCTTATGCAGGCGCGTGTCGTTGCTCGGACCCCCGAGGCTGTCCAGGCTA TCATTGGTGTGCTGCTTATTGCCGCAGCGCAGATCTTCACAGCCACACAATTTGTGTTGGAGGAGTGGATTTTGG AGAATTACGCCATGGAACCGATCCATGTTGTGGGTTGGGAAGGTGTGTTCGGATTTTTGGTTACTGTCGTTGGCA TGGTGATCATGTATCTTGCTGTCGGACGGACCGATGCCGGCCGATATGGCTACTTTGATGTCAAGCAGGGATTGC ACGAGGTTCTTAATAACCGTGCTGTTGCCATATCCAGCTTGTTTATCATGATCAGTATCGGGTATGTGTTGATCT TGCTTCTCAACTCCATTTTTCCGCCCTCCCCTCTAACGTTCGTTCTAGTGGCTTCAACTTCTTCGGTCTGTCTGT CACCCGCACTGTGTCTGCTACCTCTCGTAGCACAATCGACACCTGCCGCACACTCTTCATCTGGATTGTCTCGCT TGGACTCGGCTGGGAGACCTTCAAATGGCTCCAAGTTGCCGGATTCGCGCTTCTTGTCTATGGAACTTTCATGTT CAATGACATCGTCCGTCCTCCGCTCAAGGCTTGTTTGCCCGGTGACCGGAGAGAGGGAGAGGTGCTACTTCCCGA AGGCCCCATTGAGCATATCTGA |