© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g537.t1 |
| Gene name | |
| Location | scaffold_01:1400223..1401499 |
| Strand | - |
| Gene length (bp) | 1276 |
| Transcript length (bp) | 1170 |
| Coding sequence length (bp) | 1170 |
| Protein length (aa) | 390 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01095 | Pectinesterase | Pectinesterase | 1.8E-19 | 163 | 352 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030599 | pectinesterase activity | Yes |
| GO:0042545 | cell wall modification | Yes |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0045229 | external encapsulating structure organization | No |
| GO:0016043 | cellular component organization | No |
| GO:0052689 | carboxylic ester hydrolase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071555 | cell wall organization | No |
| GO:0003824 | catalytic activity | No |
| GO:0009987 | cellular process | No |
| GO:0071554 | cell wall organization or biogenesis | No |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g537.t1 MLPYILSLLCLLLHTQGATTTPIHPITRQTCQSTGHCPPGTLIVSRTPNHKNTTHPTLQSAINSLPNDNTPQTIL LLAGSYIEQVNITRPGPLTLLGETSNPRDASRNRVRITWAAANSDSTGAVDNVFSSVLVVAPTLEASLTGSGPTG YPVPADTPFGNTDFRVYNVDFENTWAEYSDGPAHALSLSRANGGFYYCGFYSYQDTVYIGKLGNAYFYQSILAGQ TDFLYGFGTAWIQSSALQLRGCGGGITAWKGTNTTTPNKYGVYIVDSSVRAANASVATDIQGACALGRPWNSQHR SIFACCYEDGSVDPRGYVDWVVGGVGRFEEGVTLMAEYRDFGPGVNVTGRVEGGVTSVLGLGGWEAYNTPLKVFG DVEWVDWGVVRGTD* |
| Coding | >Pro_DTO070G2_2|g537.t1 ATGCTCCCATACATCCTCTCCCTACTGTGTCTCCTCCTCCACACCCAAGGAGCCACCACTACCCCCATCCACCCC ATCACCAGACAAACCTGCCAATCCACCGGCCACTGTCCACCAGGAACCCTAATCGTCAGCCGAACCCCCAACCAC AAAAACACCACGCACCCAACCCTCCAATCCGCCATAAACTCCCTCCCCAACGACAACACCCCACAAACAATCCTC CTCCTAGCAGGCAGCTACATCGAACAAGTAAACATAACCCGCCCAGGCCCACTAACCCTCCTGGGCGAAACAAGC AACCCCAGAGACGCATCCCGCAACCGCGTGCGCATAACCTGGGCCGCCGCCAACAGCGACAGCACCGGCGCCGTC GACAACGTCTTCTCCAGCGTGCTGGTCGTAGCGCCCACGCTCGAGGCCAGCCTCACGGGCTCGGGCCCGACGGGG TATCCCGTGCCGGCGGACACGCCGTTCGGGAATACGGATTTCCGCGTGTATAATGTTGACTTTGAGAATACTTGG GCGGAGTACTCTGATGGGCCGGCGCATGCGTTGAGTCTTAGTCGGGCTAATGGAGGGTTTTATTACTGTGGGTTT TATTCGTATCAGGATACGGTCTACATAGGCAAACTAGGCAACGCCTACTTCTACCAAAGCATCCTAGCCGGCCAA ACCGACTTCCTCTACGGCTTCGGCACAGCCTGGATTCAATCCAGCGCGCTCCAGCTGCGCGGCTGCGGCGGCGGC ATAACCGCCTGGAAGGGCACGAACACCACAACCCCGAACAAGTACGGCGTGTACATAGTCGACTCGAGCGTGCGC GCCGCGAATGCCTCCGTAGCGACTGATATCCAGGGCGCGTGTGCGCTCGGCCGGCCGTGGAATAGCCAGCACCGG TCGATCTTTGCGTGCTGTTATGAGGACGGCAGTGTTGATCCGCGCGGGTATGTTGATTGGGTTGTTGGTGGTGTT GGGCGCTTCGAGGAGGGCGTTACGCTTATGGCGGAGTATCGGGATTTTGGGCCTGGGGTTAATGTGACTGGACGG GTTGAGGGGGGTGTTACTTCTGTTCTTGGATTGGGGGGTTGGGAGGCGTATAATACTCCGCTGAAGGTTTTTGGG GATGTGGAGTGGGTTGATTGGGGGGTTGTTAGGGGGACTGATTGA |
| Transcript | >Pro_DTO070G2_2|g537.t1 ATGCTCCCATACATCCTCTCCCTACTGTGTCTCCTCCTCCACACCCAAGGAGCCACCACTACCCCCATCCACCCC ATCACCAGACAAACCTGCCAATCCACCGGCCACTGTCCACCAGGAACCCTAATCGTCAGCCGAACCCCCAACCAC AAAAACACCACGCACCCAACCCTCCAATCCGCCATAAACTCCCTCCCCAACGACAACACCCCACAAACAATCCTC CTCCTAGCAGGCAGCTACATCGAACAAGTAAACATAACCCGCCCAGGCCCACTAACCCTCCTGGGCGAAACAAGC AACCCCAGAGACGCATCCCGCAACCGCGTGCGCATAACCTGGGCCGCCGCCAACAGCGACAGCACCGGCGCCGTC GACAACGTCTTCTCCAGCGTGCTGGTCGTAGCGCCCACGCTCGAGGCCAGCCTCACGGGCTCGGGCCCGACGGGG TATCCCGTGCCGGCGGACACGCCGTTCGGGAATACGGATTTCCGCGTGTATAATGTTGACTTTGAGAATACTTGG GCGGAGTACTCTGATGGGCCGGCGCATGCGTTGAGTCTTAGTCGGGCTAATGGAGGGTTTTATTACTGTGGGTTT TATTCGTATCAGGATACGGTCTACATAGGCAAACTAGGCAACGCCTACTTCTACCAAAGCATCCTAGCCGGCCAA ACCGACTTCCTCTACGGCTTCGGCACAGCCTGGATTCAATCCAGCGCGCTCCAGCTGCGCGGCTGCGGCGGCGGC ATAACCGCCTGGAAGGGCACGAACACCACAACCCCGAACAAGTACGGCGTGTACATAGTCGACTCGAGCGTGCGC GCCGCGAATGCCTCCGTAGCGACTGATATCCAGGGCGCGTGTGCGCTCGGCCGGCCGTGGAATAGCCAGCACCGG TCGATCTTTGCGTGCTGTTATGAGGACGGCAGTGTTGATCCGCGCGGGTATGTTGATTGGGTTGTTGGTGGTGTT GGGCGCTTCGAGGAGGGCGTTACGCTTATGGCGGAGTATCGGGATTTTGGGCCTGGGGTTAATGTGACTGGACGG GTTGAGGGGGGTGTTACTTCTGTTCTTGGATTGGGGGGTTGGGAGGCGTATAATACTCCGCTGAAGGTTTTTGGG GATGTGGAGTGGGTTGATTGGGGGGTTGTTAGGGGGACTGATTGA |
| Gene | >Pro_DTO070G2_2|g537.t1 ATGCTCCCATACATCCTCTCCCTACTGTGTCTCCTCCTCCACACCCAAGGAGCCACCACTACCCCCATCCACCCC ATCACCAGACAAACCTGCCAATCCACCGGCCACTGTCCACCAGGAACCCTAATCGTCAGCCGAACCCCCAACCAC AAAAACACCACGCACCCAACCCTCCAATCCGCCATAAACTCCCTCCCCAACGACAACACCCCACAAACAATCCTC CTCCTAGCAGGCAGCTACATCGAACAAGTAAACATAACCCGCCCAGGCCCACTAACCCTCCTGGGCGAAACAAGC AACCCCAGAGACGCATCCCGCAACCGCGTGCGCATAACCTGGGCCGCCGCCAACAGCGACAGCACCGGCGCCGTC GACAACGTCTTCTCCAGCGTGCTGGTCGTAGCGCCCACGCTCGAGGCCAGCCTCACGGGCTCGGGCCCGACGGGG TATCCCGTGCCGGCGGACACGCCGTTCGGGAATACGGATTTCCGCGTGTATAATGTTGACTTTGAGAATACTTGG GCGGAGTACTCTGATGGGCCGGCGCATGCGTTGAGTCTTAGTCGGGCTAATGGAGGGTTTTATTACTGTGGGTTT TATTCGTATCAGGATACGGTGCGTTTTAGCTTCTTTCTAACTGTGCTTTTGGTCTTATTGTTGAGATTATTATTC GTTATTCGTTGGGAGTGCACTATTCTCACACCAACACTAACCCCCACAGGTCTACATAGGCAAACTAGGCAACGC CTACTTCTACCAAAGCATCCTAGCCGGCCAAACCGACTTCCTCTACGGCTTCGGCACAGCCTGGATTCAATCCAG CGCGCTCCAGCTGCGCGGCTGCGGCGGCGGCATAACCGCCTGGAAGGGCACGAACACCACAACCCCGAACAAGTA CGGCGTGTACATAGTCGACTCGAGCGTGCGCGCCGCGAATGCCTCCGTAGCGACTGATATCCAGGGCGCGTGTGC GCTCGGCCGGCCGTGGAATAGCCAGCACCGGTCGATCTTTGCGTGCTGTTATGAGGACGGCAGTGTTGATCCGCG CGGGTATGTTGATTGGGTTGTTGGTGGTGTTGGGCGCTTCGAGGAGGGCGTTACGCTTATGGCGGAGTATCGGGA TTTTGGGCCTGGGGTTAATGTGACTGGACGGGTTGAGGGGGGTGTTACTTCTGTTCTTGGATTGGGGGGTTGGGA GGCGTATAATACTCCGCTGAAGGTTTTTGGGGATGTGGAGTGGGTTGATTGGGGGGTTGTTAGGGGGACTGATTG A |