Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO070G2_2|g4286.t1
Gene name
Locationscaffold_04:1268482..1270159
Strand-
Gene length (bp)1677
Transcript length (bp)1617
Coding sequence length (bp)1617
Protein length (aa) 539

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05426 Alginate_lyase Alginate lyase 2.3E-15 75 303

GO

GO Term Description Terminal node
GO:0016829 lyase activity Yes
GO:0042597 periplasmic space Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No
GO:0003824 catalytic activity No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO070G2_2|g4286.t1
MVPSLSFVIPFLPLVASFVHPGLLVSESDISRTQKKINASLDPWTTSWNTLTSLSLSDASYTPSAVSVVYRSAWE
DNAANAQLLWHDVAAAFNLGLRWKISGNTSFADAASNILHAWATNLTAIGGGDDKYLTAGLQGYELANAAELLLD
YQPFVDDVLPSVVEMANNIFIPMHYTWLNHEESSEHNILHFFANWELCNVASAMAMAVITDNQTVWDFAVNYFKN
GDGTGAINNAITNIVEEPSTGTLLGQGQESGRDQGHSALDIQLLGVIGQQALNQGEDLFAYNDSRILRGTEYFAR
YNLGNDVPFVPYTNGIVSYTEISNASRGAIRPTWELLYNHYVVLKQLDAPWTTLYLNNSLEYYGGAEGGAGSWGE
GSGHYDGLGWGSLLYHMDESDVVSASSSKAVLSTANPTPSASSATLSLAPSATTTTSGVSTQSSIVSYSTTTEFA
AVSAVVDIETVASSSTIAVSAVLDTETATSSTIAANSRTSPSFVGSTIPASTSTDLPTAPLESSQKAHHHHQPHH
YHVKGQAHVYHVQ*
Coding >Pro_DTO070G2_2|g4286.t1
ATGGTCCCCTCTCTTTCTTTCGTTATCCCTTTTCTCCCCCTTGTAGCAAGTTTTGTGCACCCTGGCCTCCTCGTC
TCTGAAAGCGATATCTCTCGCACCCAGAAAAAGATCAATGCCAGTCTGGATCCATGGACTACATCTTGGAATACC
TTGACAAGCCTCTCATTGTCGGACGCCAGCTACACTCCTTCAGCAGTCAGCGTTGTCTATCGGAGTGCCTGGGAA
GACAATGCCGCAAACGCACAGCTCCTCTGGCATGACGTCGCGGCAGCTTTCAATCTAGGCTTACGCTGGAAGATA
TCCGGGAACACGAGCTTTGCCGATGCCGCTAGCAATATCCTGCATGCATGGGCGACCAATCTCACTGCAATCGGT
GGTGGCGACGACAAGTACCTCACAGCTGGCCTGCAGGGGTATGAACTCGCCAACGCAGCCGAACTCCTTCTTGAC
TATCAGCCCTTCGTGGATGATGTCCTCCCATCTGTCGTGGAAATGGCCAATAACATCTTTATCCCGATGCACTAC
ACCTGGCTGAACCATGAAGAGTCGTCGGAGCATAATATTCTTCATTTCTTCGCCAACTGGGAGTTGTGCAATGTC
GCTTCGGCGATGGCTATGGCTGTCATAACCGACAATCAAACAGTATGGGATTTCGCTGTGAATTACTTCAAGAAC
GGGGATGGAACGGGTGCCATCAACAATGCTATCACCAATATCGTTGAAGAACCTAGTACTGGAACTTTACTCGGC
CAAGGCCAAGAATCCGGTCGTGATCAGGGCCACTCAGCGTTAGACATACAGCTTCTAGGTGTTATCGGGCAGCAG
GCCTTGAACCAAGGAGAGGATTTGTTTGCCTATAACGATAGCCGGATTCTCCGTGGAACGGAGTACTTTGCGCGA
TACAACCTTGGAAACGACGTTCCCTTCGTCCCCTACACGAACGGTATAGTCAGCTACACCGAGATCAGTAATGCC
TCCCGTGGAGCCATCAGACCTACCTGGGAGCTTCTCTACAACCACTATGTCGTGCTGAAGCAATTGGACGCACCT
TGGACCACTCTTTACCTCAACAACTCTCTTGAATATTACGGCGGTGCGGAGGGTGGTGCGGGATCCTGGGGAGAA
GGGTCTGGTCATTACGACGGGTTGGGCTGGGGATCATTGCTCTATCACATGGATGAGTCTGATGTTGTATCTGCA
TCCTCCTCCAAAGCTGTTTTATCTACGGCCAATCCCACACCAAGTGCGTCGTCCGCTACATTGAGCTTGGCTCCT
AGCGCAACGACTACGACTTCTGGCGTATCCACCCAAAGTTCGATTGTTTCATACTCAACCACCACGGAGTTTGCT
GCTGTCTCTGCTGTCGTGGACATCGAAACAGTTGCATCATCATCAACTATTGCAGTCTCTGCTGTTTTGGACACC
GAAACAGCTACATCATCAACTATTGCAGCCAACAGTAGGACTTCCCCATCTTTTGTGGGCAGTACAATTCCAGCC
AGCACATCGACAGATTTGCCCACTGCCCCACTTGAGAGCTCGCAGAAAGCTCATCACCATCATCAGCCACATCAT
TACCACGTGAAGGGTCAGGCACATGTTTACCATGTACAATAG
Transcript >Pro_DTO070G2_2|g4286.t1
ATGGTCCCCTCTCTTTCTTTCGTTATCCCTTTTCTCCCCCTTGTAGCAAGTTTTGTGCACCCTGGCCTCCTCGTC
TCTGAAAGCGATATCTCTCGCACCCAGAAAAAGATCAATGCCAGTCTGGATCCATGGACTACATCTTGGAATACC
TTGACAAGCCTCTCATTGTCGGACGCCAGCTACACTCCTTCAGCAGTCAGCGTTGTCTATCGGAGTGCCTGGGAA
GACAATGCCGCAAACGCACAGCTCCTCTGGCATGACGTCGCGGCAGCTTTCAATCTAGGCTTACGCTGGAAGATA
TCCGGGAACACGAGCTTTGCCGATGCCGCTAGCAATATCCTGCATGCATGGGCGACCAATCTCACTGCAATCGGT
GGTGGCGACGACAAGTACCTCACAGCTGGCCTGCAGGGGTATGAACTCGCCAACGCAGCCGAACTCCTTCTTGAC
TATCAGCCCTTCGTGGATGATGTCCTCCCATCTGTCGTGGAAATGGCCAATAACATCTTTATCCCGATGCACTAC
ACCTGGCTGAACCATGAAGAGTCGTCGGAGCATAATATTCTTCATTTCTTCGCCAACTGGGAGTTGTGCAATGTC
GCTTCGGCGATGGCTATGGCTGTCATAACCGACAATCAAACAGTATGGGATTTCGCTGTGAATTACTTCAAGAAC
GGGGATGGAACGGGTGCCATCAACAATGCTATCACCAATATCGTTGAAGAACCTAGTACTGGAACTTTACTCGGC
CAAGGCCAAGAATCCGGTCGTGATCAGGGCCACTCAGCGTTAGACATACAGCTTCTAGGTGTTATCGGGCAGCAG
GCCTTGAACCAAGGAGAGGATTTGTTTGCCTATAACGATAGCCGGATTCTCCGTGGAACGGAGTACTTTGCGCGA
TACAACCTTGGAAACGACGTTCCCTTCGTCCCCTACACGAACGGTATAGTCAGCTACACCGAGATCAGTAATGCC
TCCCGTGGAGCCATCAGACCTACCTGGGAGCTTCTCTACAACCACTATGTCGTGCTGAAGCAATTGGACGCACCT
TGGACCACTCTTTACCTCAACAACTCTCTTGAATATTACGGCGGTGCGGAGGGTGGTGCGGGATCCTGGGGAGAA
GGGTCTGGTCATTACGACGGGTTGGGCTGGGGATCATTGCTCTATCACATGGATGAGTCTGATGTTGTATCTGCA
TCCTCCTCCAAAGCTGTTTTATCTACGGCCAATCCCACACCAAGTGCGTCGTCCGCTACATTGAGCTTGGCTCCT
AGCGCAACGACTACGACTTCTGGCGTATCCACCCAAAGTTCGATTGTTTCATACTCAACCACCACGGAGTTTGCT
GCTGTCTCTGCTGTCGTGGACATCGAAACAGTTGCATCATCATCAACTATTGCAGTCTCTGCTGTTTTGGACACC
GAAACAGCTACATCATCAACTATTGCAGCCAACAGTAGGACTTCCCCATCTTTTGTGGGCAGTACAATTCCAGCC
AGCACATCGACAGATTTGCCCACTGCCCCACTTGAGAGCTCGCAGAAAGCTCATCACCATCATCAGCCACATCAT
TACCACGTGAAGGGTCAGGCACATGTTTACCATGTACAATAG
Gene >Pro_DTO070G2_2|g4286.t1
ATGGTCCCCTCTCTTTCTTTCGTTATCCCTTTTCTCCCCCTTGTAGCAAGTTTTGTGCACCCTGGCCTCCTCGTC
TCTGAAAGCGATATCTCTCGCACCCAGAAAAAGATCAATGCCAGTCTGGATCCATGGACTACATCTTGGAATACC
TTGACAAGCCTCTCATTGTCGGACGCCAGCTACACTCCTTCAGCAGTCAGCGTTGTCTATCGGAGTGCCTGGGAA
GACAATGCCGCAAACGCACAGCTCCTCTGGCATGACGTCGCGGCAGCTTTCAATCTAGGCTTACGCTGGAAGATA
TCCGGGAACACGAGCTTTGCCGATGCCGCTAGCAATATCCTGCATGCATGGGCGACCAATCTCACTGCAATCGGT
GGTGGCGACGACAAGTACCTCACAGCTGGCCTGCAGGGGTATGAACTCGCCAACGCAGCCGAACTCCTTCTTGAC
TATCAGCCCTTCGTGGATGATGTCCTCCCATCTGTCGTGGAAATGGCCAATAACATCTTTATCCCGATGCACTAC
ACCTGGCTGAACCATGAAGAGTCGTCGGAGCATAATATTCTTCATTTCTTCGCCAACTGGGAGTTGTGCAATGTC
GCTTCGGCGATGGCTATGGCTGTCATAACCGACAATCAAACAGTATGGGATTTCGCTGTGAATTACTTCAAGAAC
GGGGATGGAACGGGTGCCATCAACAATGCTATCACCAATATCGTTGAAGAACCTAGTACTGGAACTTTACTCGGC
CAAGGCCAAGAATCCGGTCGTGATCAGGGCCACTCAGCGTTAGACATACAGCTTCTAGGTGTTATCGGGCAGCAG
GCCTTGAACCAAGGAGAGGATTTGTTTGCCTATAACGATAGCCGGATTCTCCGTGGGTAAGTACCATCCAATCAT
CCCAAGGTTTCCGCCTTAGCAATTACTAATATTCGCCCTAGAACGGAGTACTTTGCGCGATACAACCTTGGAAAC
GACGTTCCCTTCGTCCCCTACACGAACGGTATAGTCAGCTACACCGAGATCAGTAATGCCTCCCGTGGAGCCATC
AGACCTACCTGGGAGCTTCTCTACAACCACTATGTCGTGCTGAAGCAATTGGACGCACCTTGGACCACTCTTTAC
CTCAACAACTCTCTTGAATATTACGGCGGTGCGGAGGGTGGTGCGGGATCCTGGGGAGAAGGGTCTGGTCATTAC
GACGGGTTGGGCTGGGGATCATTGCTCTATCACATGGATGAGTCTGATGTTGTATCTGCATCCTCCTCCAAAGCT
GTTTTATCTACGGCCAATCCCACACCAAGTGCGTCGTCCGCTACATTGAGCTTGGCTCCTAGCGCAACGACTACG
ACTTCTGGCGTATCCACCCAAAGTTCGATTGTTTCATACTCAACCACCACGGAGTTTGCTGCTGTCTCTGCTGTC
GTGGACATCGAAACAGTTGCATCATCATCAACTATTGCAGTCTCTGCTGTTTTGGACACCGAAACAGCTACATCA
TCAACTATTGCAGCCAACAGTAGGACTTCCCCATCTTTTGTGGGCAGTACAATTCCAGCCAGCACATCGACAGAT
TTGCCCACTGCCCCACTTGAGAGCTCGCAGAAAGCTCATCACCATCATCAGCCACATCATTACCACGTGAAGGGT
CAGGCACATGTTTACCATGTACAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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