© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g3826.t1 |
| Gene name | |
| Location | scaffold_04:79734..80604 |
| Strand | + |
| Gene length (bp) | 870 |
| Transcript length (bp) | 798 |
| Coding sequence length (bp) | 798 |
| Protein length (aa) | 266 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00505 | HMG_box | HMG (high mobility group) box | 1.1E-10 | 75 | 144 |
| PF09011 | HMG_box_2 | HMG-box domain | 1.3E-05 | 72 | 143 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| HMG |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g3826.t1 MRLMEVQSYIADLGKAYVQHVNNITEGRDANIELPLGPSGFMGPDFLFRAGSPGAKSEAGGPKKRKRAPVDPNAP KRALTPYFLYMQHNRSKIAADLGNDARPKDVADEGTRRWQSMEDTQKEVWKKMYAANYDQYKRDMAAYKASNKVE EDHDPAANQLQQDFAGAEPEAEAEAGVEGEAEHEESAEESTESSDESQSPSPVKEKTPPRSTTKRRRSDTKAKEA ETPAKSPVKRGRKAAEPVSTPAVKTPAENKRRTKKRKSEV* |
| Coding | >Pro_DTO070G2_2|g3826.t1 ATGCGCCTCATGGAGGTGCAGTCTTACATTGCTGACCTAGGCAAGGCCTACGTCCAGCATGTAAACAACATCACC GAAGGACGCGATGCCAACATTGAGCTCCCCCTCGGTCCCTCTGGATTCATGGGCCCGGATTTTCTTTTCCGTGCC GGCAGCCCCGGTGCTAAGTCTGAGGCTGGTGGCCCCAAGAAGCGCAAGCGCGCGCCCGTCGACCCCAACGCGCCC AAGCGTGCCTTGACACCCTACTTCTTGTATATGCAGCACAACCGCAGCAAGATCGCCGCCGACTTGGGCAATGAT GCGCGCCCCAAGGATGTCGCCGACGAGGGCACCCGGCGCTGGCAGAGCATGGAAGATACCCAGAAGGAGGTCTGG AAGAAGATGTATGCCGCCAACTACGACCAGTACAAGCGCGATATGGCAGCCTACAAGGCCAGCAACAAGGTTGAG GAGGACCACGATCCCGCAGCCAACCAACTGCAACAGGACTTTGCCGGTGCCGAGCCCGAGGCTGAGGCTGAGGCT GGGGTCGAGGGTGAGGCTGAGCACGAGGAGTCTGCCGAGGAGTCTACCGAATCATCCGACGAGTCGCAGTCCCCG TCTCCCGTGAAGGAAAAGACCCCGCCGCGCAGCACCACCAAGCGCCGCCGCAGTGATACCAAGGCCAAGGAAGCC GAGACTCCTGCCAAGTCGCCTGTCAAGCGGGGTCGCAAGGCTGCGGAGCCGGTGTCAACACCGGCTGTCAAGACA CCGGCTGAAAACAAGCGTAGGACCAAGAAGCGCAAGAGCGAGGTGTAA |
| Transcript | >Pro_DTO070G2_2|g3826.t1 ATGCGCCTCATGGAGGTGCAGTCTTACATTGCTGACCTAGGCAAGGCCTACGTCCAGCATGTAAACAACATCACC GAAGGACGCGATGCCAACATTGAGCTCCCCCTCGGTCCCTCTGGATTCATGGGCCCGGATTTTCTTTTCCGTGCC GGCAGCCCCGGTGCTAAGTCTGAGGCTGGTGGCCCCAAGAAGCGCAAGCGCGCGCCCGTCGACCCCAACGCGCCC AAGCGTGCCTTGACACCCTACTTCTTGTATATGCAGCACAACCGCAGCAAGATCGCCGCCGACTTGGGCAATGAT GCGCGCCCCAAGGATGTCGCCGACGAGGGCACCCGGCGCTGGCAGAGCATGGAAGATACCCAGAAGGAGGTCTGG AAGAAGATGTATGCCGCCAACTACGACCAGTACAAGCGCGATATGGCAGCCTACAAGGCCAGCAACAAGGTTGAG GAGGACCACGATCCCGCAGCCAACCAACTGCAACAGGACTTTGCCGGTGCCGAGCCCGAGGCTGAGGCTGAGGCT GGGGTCGAGGGTGAGGCTGAGCACGAGGAGTCTGCCGAGGAGTCTACCGAATCATCCGACGAGTCGCAGTCCCCG TCTCCCGTGAAGGAAAAGACCCCGCCGCGCAGCACCACCAAGCGCCGCCGCAGTGATACCAAGGCCAAGGAAGCC GAGACTCCTGCCAAGTCGCCTGTCAAGCGGGGTCGCAAGGCTGCGGAGCCGGTGTCAACACCGGCTGTCAAGACA CCGGCTGAAAACAAGCGTAGGACCAAGAAGCGCAAGAGCGAGGTGTAA |
| Gene | >Pro_DTO070G2_2|g3826.t1 ATGCGCCTCATGGAGGTGCAGTCTTACATTGCTGACCTAGGCAAGGCCTACGTCCAGCATGTAAACAACATCACC GAAGGACGCGATGCCAACATTGAGCTCCCCCTCGGTCCCTCTGGATTCATGGGCCCGGATTTTCTTTTCCGTGCC GGCAGCCCCGGTGCTAAGTCTGAGGCTGGTGGCCCCAAGAAGCGCAAGCGCGCGCCCGTCGACCCCAACGCGCCC AAGCGTGCCTTGACACCCTACTTCTTGTATATGCAGCACAACCGCAGCAAGATCGCCGCCGACTTGGGCAATGAT GCGCGCCCCAAGGATGTCGCCGACGAGGGCACCCGGCGCTGGCAGAGCATGGAAGATACCCAGAAGGAGGTATGT ATTGGCATCAAATCAGTTCCAGCTTAGTATTGTACTCAAGAATACAGAGCTAACACATTCGCATAGGTCTGGAAG AAGATGTATGCCGCCAACTACGACCAGTACAAGCGCGATATGGCAGCCTACAAGGCCAGCAACAAGGTTGAGGAG GACCACGATCCCGCAGCCAACCAACTGCAACAGGACTTTGCCGGTGCCGAGCCCGAGGCTGAGGCTGAGGCTGGG GTCGAGGGTGAGGCTGAGCACGAGGAGTCTGCCGAGGAGTCTACCGAATCATCCGACGAGTCGCAGTCCCCGTCT CCCGTGAAGGAAAAGACCCCGCCGCGCAGCACCACCAAGCGCCGCCGCAGTGATACCAAGGCCAAGGAAGCCGAG ACTCCTGCCAAGTCGCCTGTCAAGCGGGGTCGCAAGGCTGCGGAGCCGGTGTCAACACCGGCTGTCAAGACACCG GCTGAAAACAAGCGTAGGACCAAGAAGCGCAAGAGCGAGGTGTAA |