© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g3474.t1 |
| Gene name | |
| Location | scaffold_03:1743421..1744523 |
| Strand | - |
| Gene length (bp) | 1102 |
| Transcript length (bp) | 1050 |
| Coding sequence length (bp) | 1050 |
| Protein length (aa) | 350 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00010 | HLH | Helix-loop-helix DNA-binding domain | 8.8E-13 | 131 | 182 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046983 | protein dimerization activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0005515 | protein binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Helix-loop-helix |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g3474.t1 MSGGFIIKDKPDGDAFTLPPAALSNASRRSSRSDPSYAPASPTSPELSGRRSSHTARSGTSIKRPLEDFDLPPPP TRTRKIIQMKPKSPSKTRTRENVKGSQSSEDAMPPTSNSKRKQPSATSAAGRKIARKTAHSLIERRRRSKMNEEF GTLKDMIPACTGQEMHKLAILQASIDYVNYLEKCIRDMKTGGFTHTPAAPPSPTSPEFIAETGEPPMRRDSSSAY SYSTSASPELRAAPTEFPDTSPSFSPRTQVPSANIPQDASSILPSPALGPIWASNEKMQEFQGVDHEASAALLML TQDRRGTADSISENFPGSTALALSAEETPAAPADIPRRKGMSVRDLLIS* |
| Coding | >Pro_DTO070G2_2|g3474.t1 ATGTCGGGCGGCTTCATCATCAAAGATAAGCCCGACGGGGATGCATTCACATTACCTCCTGCTGCATTGAGTAAC GCCAGTCGGAGATCTTCTCGCTCAGATCCTTCATATGCCCCGGCATCGCCAACCTCCCCAGAACTCTCTGGCCGT CGTTCAAGCCACACTGCACGGTCGGGTACATCGATCAAACGCCCGCTCGAGGATTTTGATTTGCCTCCGCCACCA ACCAGAACTCGCAAGATCATCCAGATGAAGCCAAAGTCACCTTCAAAAACCAGGACGAGGGAAAATGTCAAGGGT TCACAGAGTTCAGAAGACGCAATGCCCCCCACATCGAACTCTAAAAGGAAACAGCCCAGTGCGACTAGTGCTGCA GGCCGCAAGATCGCCCGCAAGACCGCACATAGTCTAATTGAGCGGCGACGACGGTCCAAGATGAACGAGGAGTTC GGGACGTTGAAAGACATGATCCCAGCATGCACCGGGCAGGAAATGCATAAGCTGGCCATTCTTCAGGCAAGCATT GACTATGTCAATTACCTAGAGAAATGTATCCGCGACATGAAGACTGGAGGATTCACACATACCCCGGCCGCACCC CCCTCTCCAACATCCCCTGAGTTCATCGCAGAAACAGGCGAGCCGCCTATGCGAAGGGATAGTTCTTCTGCTTAT TCATACTCCACCTCTGCATCACCGGAGTTGCGCGCTGCTCCCACAGAATTCCCCGATACATCCCCGTCCTTCTCT CCGCGCACCCAAGTCCCCTCAGCCAATATCCCGCAGGATGCGTCATCTATCCTTCCTAGCCCGGCACTGGGCCCG ATATGGGCGTCGAACGAGAAGATGCAGGAGTTTCAGGGGGTTGATCATGAGGCTTCGGCAGCTTTGCTCATGCTG ACTCAGGATCGGAGAGGGACTGCTGATTCGATCAGTGAGAATTTCCCTGGGAGTACGGCATTGGCGCTGTCTGCG GAGGAGACCCCAGCTGCGCCTGCTGATATTCCAAGGAGAAAGGGCATGAGTGTCCGCGATCTTCTTATTTCATAA |
| Transcript | >Pro_DTO070G2_2|g3474.t1 ATGTCGGGCGGCTTCATCATCAAAGATAAGCCCGACGGGGATGCATTCACATTACCTCCTGCTGCATTGAGTAAC GCCAGTCGGAGATCTTCTCGCTCAGATCCTTCATATGCCCCGGCATCGCCAACCTCCCCAGAACTCTCTGGCCGT CGTTCAAGCCACACTGCACGGTCGGGTACATCGATCAAACGCCCGCTCGAGGATTTTGATTTGCCTCCGCCACCA ACCAGAACTCGCAAGATCATCCAGATGAAGCCAAAGTCACCTTCAAAAACCAGGACGAGGGAAAATGTCAAGGGT TCACAGAGTTCAGAAGACGCAATGCCCCCCACATCGAACTCTAAAAGGAAACAGCCCAGTGCGACTAGTGCTGCA GGCCGCAAGATCGCCCGCAAGACCGCACATAGTCTAATTGAGCGGCGACGACGGTCCAAGATGAACGAGGAGTTC GGGACGTTGAAAGACATGATCCCAGCATGCACCGGGCAGGAAATGCATAAGCTGGCCATTCTTCAGGCAAGCATT GACTATGTCAATTACCTAGAGAAATGTATCCGCGACATGAAGACTGGAGGATTCACACATACCCCGGCCGCACCC CCCTCTCCAACATCCCCTGAGTTCATCGCAGAAACAGGCGAGCCGCCTATGCGAAGGGATAGTTCTTCTGCTTAT TCATACTCCACCTCTGCATCACCGGAGTTGCGCGCTGCTCCCACAGAATTCCCCGATACATCCCCGTCCTTCTCT CCGCGCACCCAAGTCCCCTCAGCCAATATCCCGCAGGATGCGTCATCTATCCTTCCTAGCCCGGCACTGGGCCCG ATATGGGCGTCGAACGAGAAGATGCAGGAGTTTCAGGGGGTTGATCATGAGGCTTCGGCAGCTTTGCTCATGCTG ACTCAGGATCGGAGAGGGACTGCTGATTCGATCAGTGAGAATTTCCCTGGGAGTACGGCATTGGCGCTGTCTGCG GAGGAGACCCCAGCTGCGCCTGCTGATATTCCAAGGAGAAAGGGCATGAGTGTCCGCGATCTTCTTATTTCATAA |
| Gene | >Pro_DTO070G2_2|g3474.t1 ATGTCGGGCGGCTTCATCATCAAAGATAAGCCCGACGGGGATGCATTCACATTACCTCCTGCTGCATTGAGTAAC GCCAGTCGGAGATCTTCTCGCTCAGATCCTTCATATGCCCCGGCATCGCCAACCTCCCCAGAACTCTCTGGCCGT CGTTCAAGCCACACTGCACGGTCGGGTACATCGATCAAACGCCCGCTCGAGGATTTTGATTTGCCTCCGCCACCA ACCAGAACTCGCAAGATCATCCAGATGAAGCCAAAGTCACCTTCAAAAACCAGGACGAGGGAAAATGTCAAGGGT TCACAGAGTTCAGAAGACGCAATGCCCCCCACATCGAACTCTAAAAGGAAACAGCCCAGTGCGACTAGTGCTGCA GGCCGCAAGATCGCCCGCAAGACCGCACATAGTCTAATTGAGCGGCGACGACGGTCCAAGATGAACGAGGAGTTC GGGACGTTGAAAGACATGATCCCAGCATGCACCGGGCAGGAAATGCATAAGCTGGCCATTCTTCAGGTACAGCCA CATTTCTTCCGAAATTTGACAACATGCTAACTCTCCCAACAAGGCAAGCATTGACTATGTCAATTACCTAGAGAA ATGTATCCGCGACATGAAGACTGGAGGATTCACACATACCCCGGCCGCACCCCCCTCTCCAACATCCCCTGAGTT CATCGCAGAAACAGGCGAGCCGCCTATGCGAAGGGATAGTTCTTCTGCTTATTCATACTCCACCTCTGCATCACC GGAGTTGCGCGCTGCTCCCACAGAATTCCCCGATACATCCCCGTCCTTCTCTCCGCGCACCCAAGTCCCCTCAGC CAATATCCCGCAGGATGCGTCATCTATCCTTCCTAGCCCGGCACTGGGCCCGATATGGGCGTCGAACGAGAAGAT GCAGGAGTTTCAGGGGGTTGATCATGAGGCTTCGGCAGCTTTGCTCATGCTGACTCAGGATCGGAGAGGGACTGC TGATTCGATCAGTGAGAATTTCCCTGGGAGTACGGCATTGGCGCTGTCTGCGGAGGAGACCCCAGCTGCGCCTGC TGATATTCCAAGGAGAAAGGGCATGAGTGTCCGCGATCTTCTTATTTCATAA |