Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO070G2_2|g2879.t1
Gene name
Locationscaffold_03:222783..223189
Strand+
Gene length (bp)406
Transcript length (bp)345
Coding sequence length (bp)345
Protein length (aa) 115

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13551 HTH_29 Winged helix-turn helix 6.4E-08 25 80
PF13384 HTH_23 Homeodomain-like domain 1.6E-06 19 60

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Homeodomain-like HTH
Helix-turn-helix

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO070G2_2|g2879.t1
MALTKDILGLGRTKSGELSVAQRSAIIYAHQAGATQSKLVLDFRCSRRTIYNTLKRFKEHNTVKSLPRTGRPRIF
SDRTRHLLFILARRHPFWSYKTLSCAIPGQKGRFQSERN*
Coding >Pro_DTO070G2_2|g2879.t1
ATGGCATTAACCAAGGATATCCTTGGTTTAGGTCGTACAAAATCAGGTGAGCTATCTGTTGCTCAGCGCTCAGCT
ATTATTTATGCCCACCAGGCCGGTGCCACCCAGTCAAAGCTAGTACTCGATTTTAGGTGCTCCCGCCGAACGATT
TACAATACTTTGAAACGGTTCAAAGAACACAATACTGTTAAATCTCTCCCTCGAACCGGTCGCCCAAGGATCTTT
AGTGATCGAACTCGCCATTTACTTTTTATACTCGCCCGCCGGCACCCCTTTTGGTCCTATAAAACGCTGAGTTGT
GCTATACCTGGACAAAAAGGAAGATTCCAATCGGAAAGGAATTAG
Transcript >Pro_DTO070G2_2|g2879.t1
ATGGCATTAACCAAGGATATCCTTGGTTTAGGTCGTACAAAATCAGGTGAGCTATCTGTTGCTCAGCGCTCAGCT
ATTATTTATGCCCACCAGGCCGGTGCCACCCAGTCAAAGCTAGTACTCGATTTTAGGTGCTCCCGCCGAACGATT
TACAATACTTTGAAACGGTTCAAAGAACACAATACTGTTAAATCTCTCCCTCGAACCGGTCGCCCAAGGATCTTT
AGTGATCGAACTCGCCATTTACTTTTTATACTCGCCCGCCGGCACCCCTTTTGGTCCTATAAAACGCTGAGTTGT
GCTATACCTGGACAAAAAGGAAGATTCCAATCGGAAAGGAATTAG
Gene >Pro_DTO070G2_2|g2879.t1
ATGGCATTAACCAAGGATATCCTTGGTTTAGGTCGTACAAAATCAGGTGAGCTATCTGTTGCTCAGCGCTCAGCT
ATTATTTATGCCCACCAGGCCGGTGCCACCCAGTCAAAGCTAGTACTCGATTTTAGGTGCTCCCGCCGAACGATT
TACAATACTTTGAAACGGTTCAAAGAACACAATACTGTTAAATCTCTCCCTCGAACCGGTCGCCCAAGGATCTTT
AGTGATCGAACTCGCCATTTACTTTTTATACTCGCCCGCCGGCACCCCTTTTGGTCCTATAAAACGCTGAGTTGT
GCTATACCTGGTCATCTATCCCGCTCTACTATTATTAACGTTTTAAGGCCAACCAGTCTTCTAAAATATAGGACA
AAAAGGAAGATTCCAATCGGAAAGGAATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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