Protein ID | Pro_DTO070G2_2|g2793.t1 |
Gene name | |
Location | scaffold_02:2786701..2788974 |
Strand | + |
Gene length (bp) | 2273 |
Transcript length (bp) | 1776 |
Coding sequence length (bp) | 1776 |
Protein length (aa) | 592 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF16275 | SF1-HH | Splicing factor 1 helix-hairpin domain | 1.1E-42 | 74 | 183 |
PF00098 | zf-CCHC | Zinc knuckle | 2.3E-05 | 307 | 323 |
PF00098 | zf-CCHC | Zinc knuckle | 1.4E-05 | 332 | 347 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008270 | zinc ion binding | Yes |
GO:0003676 | nucleic acid binding | Yes |
GO:0005488 | binding | No |
GO:0043169 | cation binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0046914 | transition metal ion binding | No |
GO:0043167 | ion binding | No |
GO:0046872 | metal ion binding | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 16 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
Zinc finger, CCHC-type |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO070G2_2|g2793.t1 MAWRNQGITGSNNIPLGRRRMGGEDGEEESRTVTPSSIPSSSMGPDGPKRGRSPVRADPAPLNTDGDGKRRKKRN RWGDQQENKAAGLMGLPTMIMANFTSEQLEAYTLHLRIEEISQKLRINDVVPADGDRSPSPPPQYDNFGRRVNTR EYRYRKRLEDERHKLVEKAIKTIPNYNPPSDYRRPTKTQEKVYVPVNDYPEINFRPRGNTLKKMETESGAKIAIR GKGSVKEGKGRSDAAHGSNQEEDLHCLIMADTEEKVNKAKKLVHNVIETAASIPEGQNELKRNQLRELAALNGTL RDDENQACQNCGQIGHRKYDCPEQRNFTANIICRVCGNAGHMARDCPDRQRGSDWRNAGGPRGDRAVGTGDAVDR EMEQLMNELSGGAPGEYEPRRIEAGPDGGNGRPDDRDVKPWQQRGPPPQSDVAPWQQRRDPRPRDDYGSRDNYGS RDNHGPRDDYGSRNQGGPAPWAAQAQPQGPPQTRDYAYGSQGGYAAPGVAPGAAPWQQPAPPGGQQPAYGGGYGG YGYAAYPPGMGAPGAAPPGMGAPPPPPGMAPMYPGGAGSPPPPPPPGDAPPPPPPSDLPPPPPPPQ* |
Coding | >Pro_DTO070G2_2|g2793.t1 ATGGCTTGGCGCAACCAGGGAATAACTGGCTCCAACAATATCCCGCTTGGCCGGCGACGCATGGGCGGCGAGGAT GGAGAGGAGGAAAGTCGCACTGTGACCCCTTCTTCTATCCCCTCTTCGTCTATGGGTCCCGATGGTCCAAAGCGT GGGCGTAGCCCTGTTCGAGCCGATCCAGCTCCCTTGAACACCGATGGCGATGGCAAGAGGCGCAAGAAGCGCAAC CGCTGGGGTGACCAACAAGAGAATAAGGCTGCCGGTCTTATGGGCCTGCCAACTATGATCATGGCGAACTTCACC AGCGAGCAGCTTGAAGCTTATACGCTTCACCTTCGTATTGAGGAAATCAGCCAGAAGCTTCGAATCAACGACGTG GTCCCCGCCGATGGTGACAGATCTCCCTCGCCACCTCCCCAGTACGACAACTTCGGAAGACGTGTGAACACTCGC GAGTACCGTTATCGCAAGCGTCTTGAGGACGAACGTCATAAACTGGTCGAGAAGGCCATCAAGACCATCCCTAAC TACAACCCGCCTTCTGACTACAGACGCCCCACCAAGACCCAGGAGAAGGTCTACGTCCCCGTGAATGACTATCCA GAGATTAACTTCAGACCTCGTGGAAACACCTTGAAAAAGATGGAGACCGAGTCCGGTGCCAAGATTGCCATTCGA GGCAAAGGCTCCGTCAAAGAAGGAAAGGGTCGGTCTGACGCCGCTCACGGTAGCAACCAGGAAGAAGACCTGCAC TGTCTGATTATGGCGGACACCGAAGAAAAGGTTAACAAGGCCAAGAAGCTTGTCCACAATGTCATTGAAACAGCC GCATCCATCCCTGAAGGCCAGAACGAGCTCAAGCGCAACCAACTTCGTGAGCTGGCTGCTCTTAACGGTACCCTT CGTGACGATGAGAACCAGGCTTGCCAGAACTGTGGTCAAATTGGACACCGTAAGTATGACTGCCCCGAGCAGCGT AACTTCACTGCGAATATCATCTGTCGTGTCTGTGGCAATGCTGGCCATATGGCTCGTGATTGTCCCGACCGCCAG AGAGGCAGTGACTGGCGTAACGCCGGCGGCCCACGTGGCGATCGTGCTGTTGGCACTGGTGATGCCGTGGATCGC GAGATGGAGCAACTGATGAATGAATTGTCTGGTGGTGCTCCTGGCGAATACGAGCCCCGTCGCATTGAAGCCGGT CCCGACGGTGGCAATGGCCGTCCCGACGACCGTGATGTGAAGCCCTGGCAGCAGCGTGGACCGCCGCCCCAAAGC GATGTGGCTCCATGGCAACAGCGCCGAGACCCTCGCCCTCGTGACGACTACGGATCCCGCGATAACTATGGATCC CGCGACAATCACGGACCTCGTGACGACTATGGATCTCGCAACCAGGGTGGTCCTGCCCCTTGGGCTGCGCAGGCC CAACCCCAAGGTCCACCCCAAACCCGCGACTACGCTTACGGATCTCAAGGTGGTTATGCTGCTCCTGGTGTTGCT CCGGGTGCTGCTCCTTGGCAGCAACCGGCCCCTCCTGGCGGACAGCAGCCTGCCTATGGTGGTGGTTATGGTGGA TACGGATATGCGGCTTATCCTCCTGGCATGGGAGCTCCTGGTGCTGCCCCCCCTGGTATGGGCGCACCTCCTCCC CCTCCTGGTATGGCTCCAATGTACCCCGGAGGTGCTGGCAGTCCTCCTCCTCCGCCCCCGCCTGGCGATGCTCCG CCTCCACCACCTCCAAGCGACCTGCCTCCCCCACCCCCACCCCCACAGTGA |
Transcript | >Pro_DTO070G2_2|g2793.t1 ATGGCTTGGCGCAACCAGGGAATAACTGGCTCCAACAATATCCCGCTTGGCCGGCGACGCATGGGCGGCGAGGAT GGAGAGGAGGAAAGTCGCACTGTGACCCCTTCTTCTATCCCCTCTTCGTCTATGGGTCCCGATGGTCCAAAGCGT GGGCGTAGCCCTGTTCGAGCCGATCCAGCTCCCTTGAACACCGATGGCGATGGCAAGAGGCGCAAGAAGCGCAAC CGCTGGGGTGACCAACAAGAGAATAAGGCTGCCGGTCTTATGGGCCTGCCAACTATGATCATGGCGAACTTCACC AGCGAGCAGCTTGAAGCTTATACGCTTCACCTTCGTATTGAGGAAATCAGCCAGAAGCTTCGAATCAACGACGTG GTCCCCGCCGATGGTGACAGATCTCCCTCGCCACCTCCCCAGTACGACAACTTCGGAAGACGTGTGAACACTCGC GAGTACCGTTATCGCAAGCGTCTTGAGGACGAACGTCATAAACTGGTCGAGAAGGCCATCAAGACCATCCCTAAC TACAACCCGCCTTCTGACTACAGACGCCCCACCAAGACCCAGGAGAAGGTCTACGTCCCCGTGAATGACTATCCA GAGATTAACTTCAGACCTCGTGGAAACACCTTGAAAAAGATGGAGACCGAGTCCGGTGCCAAGATTGCCATTCGA GGCAAAGGCTCCGTCAAAGAAGGAAAGGGTCGGTCTGACGCCGCTCACGGTAGCAACCAGGAAGAAGACCTGCAC TGTCTGATTATGGCGGACACCGAAGAAAAGGTTAACAAGGCCAAGAAGCTTGTCCACAATGTCATTGAAACAGCC GCATCCATCCCTGAAGGCCAGAACGAGCTCAAGCGCAACCAACTTCGTGAGCTGGCTGCTCTTAACGGTACCCTT CGTGACGATGAGAACCAGGCTTGCCAGAACTGTGGTCAAATTGGACACCGTAAGTATGACTGCCCCGAGCAGCGT AACTTCACTGCGAATATCATCTGTCGTGTCTGTGGCAATGCTGGCCATATGGCTCGTGATTGTCCCGACCGCCAG AGAGGCAGTGACTGGCGTAACGCCGGCGGCCCACGTGGCGATCGTGCTGTTGGCACTGGTGATGCCGTGGATCGC GAGATGGAGCAACTGATGAATGAATTGTCTGGTGGTGCTCCTGGCGAATACGAGCCCCGTCGCATTGAAGCCGGT CCCGACGGTGGCAATGGCCGTCCCGACGACCGTGATGTGAAGCCCTGGCAGCAGCGTGGACCGCCGCCCCAAAGC GATGTGGCTCCATGGCAACAGCGCCGAGACCCTCGCCCTCGTGACGACTACGGATCCCGCGATAACTATGGATCC CGCGACAATCACGGACCTCGTGACGACTATGGATCTCGCAACCAGGGTGGTCCTGCCCCTTGGGCTGCGCAGGCC CAACCCCAAGGTCCACCCCAAACCCGCGACTACGCTTACGGATCTCAAGGTGGTTATGCTGCTCCTGGTGTTGCT CCGGGTGCTGCTCCTTGGCAGCAACCGGCCCCTCCTGGCGGACAGCAGCCTGCCTATGGTGGTGGTTATGGTGGA TACGGATATGCGGCTTATCCTCCTGGCATGGGAGCTCCTGGTGCTGCCCCCCCTGGTATGGGCGCACCTCCTCCC CCTCCTGGTATGGCTCCAATGTACCCCGGAGGTGCTGGCAGTCCTCCTCCTCCGCCCCCGCCTGGCGATGCTCCG CCTCCACCACCTCCAAGCGACCTGCCTCCCCCACCCCCACCCCCACAGTGA |
Gene | >Pro_DTO070G2_2|g2793.t1 ATGGCTTGGCGCAACCAGGGAATAACTGGCTCCAACAATATCCCGCTTGGCCGGCGACGCATGGGCGGCGAGGAT GGAGAGGAGGAAAGTCGCACTGTGACCCCTTCTTCTATCCCCTCTTCGTCTATGGGTCCCGATGGTCCAAAGCGT GGGCGTAGCCCTGTTCGAGGTACGTTTCTTCTAAACTCAAAGGTGAAAACAAAATCAAGACTGACCTTGCTTCAA AGCCGATCCAGCTCCCTTGAACACCGATGGCGATGGCAAGAGGCGCAAGAAGCGCAACCGCTGGGGTGACCAACA AGAGAATAAGGCTGCCGGTCTTATGGGCCTGCCAACTATGATCATGGCGAACTTCACCAGCGAGCAGCTTGAAGC TTATACGCTTCACCTTCGTATTGAGGAAATCAGCCAGAAGCTTCGAATCAACGACGTGGTCCCCGCCGATGGTGA CAGGTACGTGCTTTCATCCTTTGTAAACTCCGTTTATTTGTATACTGACTTTGATCGCAGATCTCCCTCGCCACC TCCCCAGTACGACAACTTCGGAAGACGTGTGAACACTCGCGAGTACCGTTATCGCAAGCGTCTTGAGGACGAACG TCATAAACTGGTCGAGAAGGCCATCAAGACCATCCCTAACTACAACCCGCCTTCTGACTACAGACGCCCCACCAA GACCCAGGAGAAGGTCTACGTCCCCGTGAATGACTATCCAGAGATTAACTTCAGTATGATAACTAACCCTCTAAC TCCTAACCATTCTTCCATTGCGTCTATCACGAGTCCCTACTCGACTCGAGCTGACAAGGCATACCACTTTGGATG TCCTCAGCTTGTTTCTTGCTAAACCGTGGTGCTTGATGCTGCACATATTTAAAAAAATTACAGGATCACTAACAC CTAGCTCTTGCTATTTTTACAGTTGGCTTACTCATAGGACCTCGTGGAAACACCTTGAAAAAGATGGAGACCGAG TCCGGTGCCAAGATTGCCATTCGAGGCAAAGGCTCCGTCAAAGAAGGAAAGGGTCGGTCTGACGCCGCTCACGGT AGCAACCAGGAAGAAGACCTGCACTGTCTGATTATGGCGGACACCGAAGAAAAGGTTAACAAGGCCAAGAAGCTT GTCCACAATGTCATTGAAACAGTAAGTTCCCATGTCTCATTTTGTCGATCAAAACCCGGTATTAACAGTTGCTAG GCCGCATCCATCCCTGAAGGCCAGAACGAGCTCAAGCGCAACCAACTTCGTGAGCTGGCTGCTCTTAACGGTACC CTTCGTGACGATGAGAACCAGGCTTGCCAGAACTGTAAGTGAACACCTTTCAAACGTCCTTTGTTGCGCGATTAA TTCTAACCGTGGTTCTTATCAGGTGGTCAAATTGGACACCGTAAGTATGACTGCCCCGAGCAGCGTAACTTCACT GCGAATATCATCTGTCGTGTCTGTGGCAATGCTGGCCATATGGCTCGTGATTGTCCCGACCGCCAGAGAGGCAGT GACTGGCGTAACGCCGGCGGCCCACGTGGCGATCGTGCTGTTGGCACTGGTGATGCCGTGGATCGCGAGATGGAG GTAAGTTCTCTTTGCTCATGACTGCTTTCTCGGGCATGGCACTAACAACCCCTTAGCAACTGATGAATGAATTGT CTGGTGGTGCTCCTGGCGAATACGAGCCCCGTCGCATTGAAGCCGGTCCCGACGGTGGCAATGGCCGTCCCGACG ACCGTGATGTGAAGCCCTGGCAGCAGCGTGGACCGCCGCCCCAAAGCGATGTGGCTCCATGGCAACAGCGCCGAG ACCCTCGCCCTCGTGACGACTACGGATCCCGCGATAACTATGGATCCCGCGACAATCACGGACCTCGTGACGACT ATGGATCTCGCAACCAGGGTGGTCCTGCCCCTTGGGCTGCGCAGGCCCAACCCCAAGGTCCACCCCAAACCCGCG ACTACGCTTACGGATCTCAAGGTGGTTATGCTGCTCCTGGTGTTGCTCCGGGTGCTGCTCCTTGGCAGCAACCGG CCCCTCCTGGCGGACAGCAGCCTGCCTATGGTGGTGGTTATGGTGGATACGGATATGCGGCTTATCCTCCTGGCA TGGGAGCTCCTGGTGCTGCCCCCCCTGGTATGGGCGCACCTCCTCCCCCTCCTGGTATGGCTCCAATGTACCCCG GAGGTGCTGGCAGTCCTCCTCCTCCGCCCCCGCCTGGCGATGCTCCGCCTCCACCACCTCCAAGCGACCTGCCTC CCCCACCCCCACCCCCACAGTGA |