© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO070G2_2|g2602.t1 |
| Gene name | |
| Location | scaffold_02:2265606..2268030 |
| Strand | + |
| Gene length (bp) | 2424 |
| Transcript length (bp) | 2424 |
| Coding sequence length (bp) | 2424 |
| Protein length (aa) | 808 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 3.2E-08 | 737 | 801 |
| PF13639 | zf-RING_2 | Ring finger domain | 1.3E-07 | 774 | 801 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 2.3E-06 | 737 | 800 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043169 | cation binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 387 | 404 | 17 |
| 2 | 417 | 439 | 22 |
| 3 | 443 | 465 | 22 |
| 4 | 554 | 576 | 22 |
| 5 | 580 | 599 | 19 |
| 6 | 620 | 639 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO070G2_2|g2602.t1 MDNRGSFFFFVLVFYLLFSSQSRPPLIDEDRARQRELDHERQVLRLLNGSKYGDFDPPANRWLPFSGSRGNDSYA WDLFPQVKGLARHQLQSAVSNAGLESPDGLEDPIVSPTLNLTKLLLPIYRNSTGKLRGDWVRRTEGVHRREPLNT TAIAEEHEYFTHEFSHNITGNSGTFYFDLEEGGGEELQMGDGLLREMRASLTVESEDFWGSTWYISLLGVHFPDT GSIVLTTSSEKFGGIFSLPHFMLSSDTYELSHELLLKSLSDTISEKQNRPPTLFPWSSLTGTEQMEFPAPKCEHI IYLQQHPVMLEDAVADRLLLERMEQELRYPMGAPIPDPPLMVMSAVVFSPDCGYILQTKGTPEFPPSDALYVTGP KHEEYSKYASRLIFVVSGVFVAQITLLLRQIKEASTPSTRSRISFYTIALMALGDAFVLTFIVLELYAAVSFLVL ATASFLAFLSVSYIGMKFMMEIWAVQEPERREQDRPPNPSTPTTRPGTLPLPATASEARDSGATPIILSPDQDAP DDEMDSPPPTTRATPPTPRQIRSDVGTMYARFYLTLFGMLILSIWAFLLPRRLGSIYTRFLAAVYLSFWVPQVYR NAMRNCRKALRWDFVAGQSVLRLFPFLYFLTARGNVLFIRPDYTSAFIMTGWVWIQAWILVSQDVLGPRFFVPRG WAPHAYDYHPMLRDLSGADEDLEAGGGVLSIASLRGDERDLVSDSKDDDKQRKDRKKAIFDCAICMQDIEVPVLP APSASGGSSVTDGAASILSRRLYMVTPCRHIFHTACLESWMRLRLQCPICRESIPPV* |
| Coding | >Pro_DTO070G2_2|g2602.t1 ATGGATAACCGCGGCTCCTTTTTCTTCTTCGTGCTGGTGTTCTACCTTCTCTTCAGTTCCCAGTCTCGACCGCCA TTGATCGATGAAGATCGGGCACGGCAACGTGAGCTTGACCATGAGCGACAGGTCCTTCGGTTATTGAATGGATCA AAATATGGCGACTTCGATCCGCCCGCCAATCGATGGCTTCCTTTTTCGGGTTCAAGAGGGAATGACAGCTATGCT TGGGACCTTTTTCCGCAGGTCAAAGGCCTGGCTCGCCACCAGTTACAATCAGCGGTCTCAAATGCCGGGCTAGAA TCCCCGGACGGTCTAGAAGACCCCATTGTCTCGCCTACTTTGAACTTGACCAAGCTTCTGCTTCCGATATATCGC AACTCAACCGGGAAGCTGCGGGGGGACTGGGTTCGGCGAACTGAAGGTGTTCATCGCCGTGAACCTCTGAACACG ACAGCCATCGCTGAAGAACACGAATACTTTACTCATGAATTCAGTCATAATATCACTGGCAATAGCGGCACCTTT TACTTTGATCTTGAAGAGGGAGGTGGTGAAGAACTTCAGATGGGCGATGGACTTTTGAGAGAGATGCGAGCCAGT TTGACGGTCGAGAGCGAGGACTTCTGGGGAAGTACCTGGTACATCTCGTTGTTAGGTGTACACTTCCCAGACACC GGAAGTATCGTTTTGACTACTTCCAGTGAGAAATTTGGCGGCATCTTCTCGTTGCCGCATTTCATGCTATCTTCT GACACTTACGAATTGTCACACGAGCTTCTTCTCAAGTCACTGTCGGACACCATCTCGGAGAAGCAAAATCGACCC CCAACACTGTTCCCCTGGTCCTCTCTGACAGGAACAGAGCAGATGGAGTTCCCTGCGCCTAAATGTGAACATATC ATCTACTTGCAGCAGCATCCAGTCATGCTCGAAGATGCCGTTGCTGACCGATTGTTATTGGAGCGTATGGAGCAA GAGCTCAGATATCCTATGGGAGCGCCAATCCCAGATCCTCCTCTTATGGTCATGTCTGCTGTTGTCTTCTCCCCA GACTGCGGGTACATACTTCAAACGAAAGGAACCCCTGAGTTTCCTCCTTCTGATGCATTATATGTGACTGGGCCT AAGCATGAAGAGTACAGTAAATATGCATCTCGTCTCATTTTTGTGGTTTCTGGTGTTTTTGTTGCACAGATCACC CTGCTTCTTCGACAGATCAAAGAGGCTTCGACTCCTTCTACCCGGAGTCGGATCAGCTTCTATACCATCGCATTG ATGGCGCTCGGCGATGCATTTGTTTTGACATTCATTGTTTTGGAACTATATGCCGCAGTATCTTTCCTAGTTTTG GCTACTGCATCATTTTTGGCGTTCCTGTCGGTGAGTTATATTGGAATGAAGTTCATGATGGAAATATGGGCAGTG CAAGAGCCAGAAAGAAGAGAGCAAGATCGTCCGCCCAATCCATCAACTCCAACAACTCGCCCTGGAACTTTGCCT TTGCCTGCCACTGCTTCGGAAGCACGAGACTCGGGAGCGACCCCAATCATCTTGTCACCCGACCAAGATGCCCCC GACGATGAGATGGATTCGCCGCCGCCAACCACCCGAGCCACTCCCCCAACTCCAAGGCAAATCCGCAGCGACGTA GGAACAATGTACGCACGGTTCTATCTTACCCTATTTGGCATGCTCATCCTGTCAATCTGGGCTTTCCTCCTGCCG AGACGTCTCGGCTCAATATACACCCGCTTCTTGGCAGCAGTCTATCTCTCCTTCTGGGTTCCACAGGTCTACCGC AACGCGATGAGAAATTGCCGCAAGGCTCTTCGGTGGGACTTTGTTGCCGGCCAAAGTGTTCTGCGACTCTTCCCA TTCTTGTACTTCCTCACGGCACGGGGAAACGTGTTGTTTATCCGCCCCGACTATACAAGCGCATTCATCATGACT GGATGGGTGTGGATTCAAGCATGGATCCTGGTCAGCCAGGACGTTCTCGGGCCACGCTTCTTTGTGCCTCGTGGC TGGGCACCGCATGCATACGATTACCATCCCATGCTGCGCGATTTATCCGGAGCGGACGAGGATCTCGAAGCCGGT GGTGGCGTTCTGTCGATTGCATCCCTGCGCGGTGATGAACGAGATCTAGTCAGTGATTCGAAGGATGATGATAAG CAGCGGAAAGACCGCAAGAAGGCCATATTCGACTGTGCTATTTGCATGCAGGATATCGAGGTTCCTGTCCTTCCC GCGCCTTCTGCTTCGGGTGGAAGTAGCGTCACCGATGGGGCCGCAAGCATCTTGAGTCGCCGGCTATATATGGTC ACTCCTTGTCGTCATATATTCCACACTGCCTGTCTGGAAAGCTGGATGAGACTTCGCCTCCAATGTCCGATCTGT CGTGAATCCATACCTCCTGTATAA |
| Transcript | >Pro_DTO070G2_2|g2602.t1 ATGGATAACCGCGGCTCCTTTTTCTTCTTCGTGCTGGTGTTCTACCTTCTCTTCAGTTCCCAGTCTCGACCGCCA TTGATCGATGAAGATCGGGCACGGCAACGTGAGCTTGACCATGAGCGACAGGTCCTTCGGTTATTGAATGGATCA AAATATGGCGACTTCGATCCGCCCGCCAATCGATGGCTTCCTTTTTCGGGTTCAAGAGGGAATGACAGCTATGCT TGGGACCTTTTTCCGCAGGTCAAAGGCCTGGCTCGCCACCAGTTACAATCAGCGGTCTCAAATGCCGGGCTAGAA TCCCCGGACGGTCTAGAAGACCCCATTGTCTCGCCTACTTTGAACTTGACCAAGCTTCTGCTTCCGATATATCGC AACTCAACCGGGAAGCTGCGGGGGGACTGGGTTCGGCGAACTGAAGGTGTTCATCGCCGTGAACCTCTGAACACG ACAGCCATCGCTGAAGAACACGAATACTTTACTCATGAATTCAGTCATAATATCACTGGCAATAGCGGCACCTTT TACTTTGATCTTGAAGAGGGAGGTGGTGAAGAACTTCAGATGGGCGATGGACTTTTGAGAGAGATGCGAGCCAGT TTGACGGTCGAGAGCGAGGACTTCTGGGGAAGTACCTGGTACATCTCGTTGTTAGGTGTACACTTCCCAGACACC GGAAGTATCGTTTTGACTACTTCCAGTGAGAAATTTGGCGGCATCTTCTCGTTGCCGCATTTCATGCTATCTTCT GACACTTACGAATTGTCACACGAGCTTCTTCTCAAGTCACTGTCGGACACCATCTCGGAGAAGCAAAATCGACCC CCAACACTGTTCCCCTGGTCCTCTCTGACAGGAACAGAGCAGATGGAGTTCCCTGCGCCTAAATGTGAACATATC ATCTACTTGCAGCAGCATCCAGTCATGCTCGAAGATGCCGTTGCTGACCGATTGTTATTGGAGCGTATGGAGCAA GAGCTCAGATATCCTATGGGAGCGCCAATCCCAGATCCTCCTCTTATGGTCATGTCTGCTGTTGTCTTCTCCCCA GACTGCGGGTACATACTTCAAACGAAAGGAACCCCTGAGTTTCCTCCTTCTGATGCATTATATGTGACTGGGCCT AAGCATGAAGAGTACAGTAAATATGCATCTCGTCTCATTTTTGTGGTTTCTGGTGTTTTTGTTGCACAGATCACC CTGCTTCTTCGACAGATCAAAGAGGCTTCGACTCCTTCTACCCGGAGTCGGATCAGCTTCTATACCATCGCATTG ATGGCGCTCGGCGATGCATTTGTTTTGACATTCATTGTTTTGGAACTATATGCCGCAGTATCTTTCCTAGTTTTG GCTACTGCATCATTTTTGGCGTTCCTGTCGGTGAGTTATATTGGAATGAAGTTCATGATGGAAATATGGGCAGTG CAAGAGCCAGAAAGAAGAGAGCAAGATCGTCCGCCCAATCCATCAACTCCAACAACTCGCCCTGGAACTTTGCCT TTGCCTGCCACTGCTTCGGAAGCACGAGACTCGGGAGCGACCCCAATCATCTTGTCACCCGACCAAGATGCCCCC GACGATGAGATGGATTCGCCGCCGCCAACCACCCGAGCCACTCCCCCAACTCCAAGGCAAATCCGCAGCGACGTA GGAACAATGTACGCACGGTTCTATCTTACCCTATTTGGCATGCTCATCCTGTCAATCTGGGCTTTCCTCCTGCCG AGACGTCTCGGCTCAATATACACCCGCTTCTTGGCAGCAGTCTATCTCTCCTTCTGGGTTCCACAGGTCTACCGC AACGCGATGAGAAATTGCCGCAAGGCTCTTCGGTGGGACTTTGTTGCCGGCCAAAGTGTTCTGCGACTCTTCCCA TTCTTGTACTTCCTCACGGCACGGGGAAACGTGTTGTTTATCCGCCCCGACTATACAAGCGCATTCATCATGACT GGATGGGTGTGGATTCAAGCATGGATCCTGGTCAGCCAGGACGTTCTCGGGCCACGCTTCTTTGTGCCTCGTGGC TGGGCACCGCATGCATACGATTACCATCCCATGCTGCGCGATTTATCCGGAGCGGACGAGGATCTCGAAGCCGGT GGTGGCGTTCTGTCGATTGCATCCCTGCGCGGTGATGAACGAGATCTAGTCAGTGATTCGAAGGATGATGATAAG CAGCGGAAAGACCGCAAGAAGGCCATATTCGACTGTGCTATTTGCATGCAGGATATCGAGGTTCCTGTCCTTCCC GCGCCTTCTGCTTCGGGTGGAAGTAGCGTCACCGATGGGGCCGCAAGCATCTTGAGTCGCCGGCTATATATGGTC ACTCCTTGTCGTCATATATTCCACACTGCCTGTCTGGAAAGCTGGATGAGACTTCGCCTCCAATGTCCGATCTGT CGTGAATCCATACCTCCTGTATAA |
| Gene | >Pro_DTO070G2_2|g2602.t1 ATGGATAACCGCGGCTCCTTTTTCTTCTTCGTGCTGGTGTTCTACCTTCTCTTCAGTTCCCAGTCTCGACCGCCA TTGATCGATGAAGATCGGGCACGGCAACGTGAGCTTGACCATGAGCGACAGGTCCTTCGGTTATTGAATGGATCA AAATATGGCGACTTCGATCCGCCCGCCAATCGATGGCTTCCTTTTTCGGGTTCAAGAGGGAATGACAGCTATGCT TGGGACCTTTTTCCGCAGGTCAAAGGCCTGGCTCGCCACCAGTTACAATCAGCGGTCTCAAATGCCGGGCTAGAA TCCCCGGACGGTCTAGAAGACCCCATTGTCTCGCCTACTTTGAACTTGACCAAGCTTCTGCTTCCGATATATCGC AACTCAACCGGGAAGCTGCGGGGGGACTGGGTTCGGCGAACTGAAGGTGTTCATCGCCGTGAACCTCTGAACACG ACAGCCATCGCTGAAGAACACGAATACTTTACTCATGAATTCAGTCATAATATCACTGGCAATAGCGGCACCTTT TACTTTGATCTTGAAGAGGGAGGTGGTGAAGAACTTCAGATGGGCGATGGACTTTTGAGAGAGATGCGAGCCAGT TTGACGGTCGAGAGCGAGGACTTCTGGGGAAGTACCTGGTACATCTCGTTGTTAGGTGTACACTTCCCAGACACC GGAAGTATCGTTTTGACTACTTCCAGTGAGAAATTTGGCGGCATCTTCTCGTTGCCGCATTTCATGCTATCTTCT GACACTTACGAATTGTCACACGAGCTTCTTCTCAAGTCACTGTCGGACACCATCTCGGAGAAGCAAAATCGACCC CCAACACTGTTCCCCTGGTCCTCTCTGACAGGAACAGAGCAGATGGAGTTCCCTGCGCCTAAATGTGAACATATC ATCTACTTGCAGCAGCATCCAGTCATGCTCGAAGATGCCGTTGCTGACCGATTGTTATTGGAGCGTATGGAGCAA GAGCTCAGATATCCTATGGGAGCGCCAATCCCAGATCCTCCTCTTATGGTCATGTCTGCTGTTGTCTTCTCCCCA GACTGCGGGTACATACTTCAAACGAAAGGAACCCCTGAGTTTCCTCCTTCTGATGCATTATATGTGACTGGGCCT AAGCATGAAGAGTACAGTAAATATGCATCTCGTCTCATTTTTGTGGTTTCTGGTGTTTTTGTTGCACAGATCACC CTGCTTCTTCGACAGATCAAAGAGGCTTCGACTCCTTCTACCCGGAGTCGGATCAGCTTCTATACCATCGCATTG ATGGCGCTCGGCGATGCATTTGTTTTGACATTCATTGTTTTGGAACTATATGCCGCAGTATCTTTCCTAGTTTTG GCTACTGCATCATTTTTGGCGTTCCTGTCGGTGAGTTATATTGGAATGAAGTTCATGATGGAAATATGGGCAGTG CAAGAGCCAGAAAGAAGAGAGCAAGATCGTCCGCCCAATCCATCAACTCCAACAACTCGCCCTGGAACTTTGCCT TTGCCTGCCACTGCTTCGGAAGCACGAGACTCGGGAGCGACCCCAATCATCTTGTCACCCGACCAAGATGCCCCC GACGATGAGATGGATTCGCCGCCGCCAACCACCCGAGCCACTCCCCCAACTCCAAGGCAAATCCGCAGCGACGTA GGAACAATGTACGCACGGTTCTATCTTACCCTATTTGGCATGCTCATCCTGTCAATCTGGGCTTTCCTCCTGCCG AGACGTCTCGGCTCAATATACACCCGCTTCTTGGCAGCAGTCTATCTCTCCTTCTGGGTTCCACAGGTCTACCGC AACGCGATGAGAAATTGCCGCAAGGCTCTTCGGTGGGACTTTGTTGCCGGCCAAAGTGTTCTGCGACTCTTCCCA TTCTTGTACTTCCTCACGGCACGGGGAAACGTGTTGTTTATCCGCCCCGACTATACAAGCGCATTCATCATGACT GGATGGGTGTGGATTCAAGCATGGATCCTGGTCAGCCAGGACGTTCTCGGGCCACGCTTCTTTGTGCCTCGTGGC TGGGCACCGCATGCATACGATTACCATCCCATGCTGCGCGATTTATCCGGAGCGGACGAGGATCTCGAAGCCGGT GGTGGCGTTCTGTCGATTGCATCCCTGCGCGGTGATGAACGAGATCTAGTCAGTGATTCGAAGGATGATGATAAG CAGCGGAAAGACCGCAAGAAGGCCATATTCGACTGTGCTATTTGCATGCAGGATATCGAGGTTCCTGTCCTTCCC GCGCCTTCTGCTTCGGGTGGAAGTAGCGTCACCGATGGGGCCGCAAGCATCTTGAGTCGCCGGCTATATATGGTC ACTCCTTGTCGTCATATATTCCACACTGCCTGTCTGGAAAGCTGGATGAGACTTCGCCTCCAATGTCCGATCTGT CGTGAATCCATACCTCCTGTATAA |