Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO070G2_2|g1640.t1
Gene name
Locationscaffold_01:4339789..4340938
Strand+
Gene length (bp)1149
Transcript length (bp)477
Coding sequence length (bp)477
Protein length (aa) 159

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00505 HMG_box HMG (high mobility group) box 1.5E-15 96 145
PF09011 HMG_box_2 HMG-box domain 5.9E-09 96 144

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
HMG

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO070G2_2|g1640.t1
MVDGCLSLAVAPLSLLLLRPSPLYSSLLLLSSYTTNSPYKNSPYKKSPFSFQNIFLICDHQIHSSCLRRPPPRPP
ARPPRSASSAARRTPTRPSVVREENPGISFGQVGKQLGDKWKALSETDRKPYDAKAAADKKRYEEEKAAYLAKAE
EEEEEESS*
Coding >Pro_DTO070G2_2|g1640.t1
ATGGTGGACGGCTGCCTTTCCCTTGCTGTGGCCCCCCTCTCTTTGCTACTACTACGGCCCTCCCCCCTCTACTCT
TCTCTTCTCTTACTATCTTCCTACACTACCAACTCCCCATACAAAAACTCCCCTTACAAAAAAAGTCCTTTTTCT
TTTCAAAACATATTCCTAATTTGTGATCATCAAATTCATTCATCATGCCTAAGGAGACCACCACCAAGACCACCC
GCAAGGCCCCCGAGAAGCGCGTCCAGCGCCGCAAGAAGGACCCCAACGCGCCCAAGCGTGGTCCGCGAGGAGAAC
CCCGGCATCAGCTTCGGCCAGGTTGGCAAGCAGCTCGGTGACAAGTGGAAGGCTCTGAGCGAGACCGACCGCAAG
CCCTACGATGCTAAGGCCGCCGCCGACAAGAAGCGCTACGAAGAGGAGAAGGCCGCCTACCTCGCCAAGGCTGAG
GAGGAGGAAGAGGAGGAATCCTCTTAA
Transcript >Pro_DTO070G2_2|g1640.t1
ATGGTGGACGGCTGCCTTTCCCTTGCTGTGGCCCCCCTCTCTTTGCTACTACTACGGCCCTCCCCCCTCTACTCT
TCTCTTCTCTTACTATCTTCCTACACTACCAACTCCCCATACAAAAACTCCCCTTACAAAAAAAGTCCTTTTTCT
TTTCAAAACATATTCCTAATTTGTGATCATCAAATTCATTCATCATGCCTAAGGAGACCACCACCAAGACCACCC
GCAAGGCCCCCGAGAAGCGCGTCCAGCGCCGCAAGAAGGACCCCAACGCGCCCAAGCGTGGTCCGCGAGGAGAAC
CCCGGCATCAGCTTCGGCCAGGTTGGCAAGCAGCTCGGTGACAAGTGGAAGGCTCTGAGCGAGACCGACCGCAAG
CCCTACGATGCTAAGGCCGCCGCCGACAAGAAGCGCTACGAAGAGGAGAAGGCCGCCTACCTCGCCAAGGCTGAG
GAGGAGGAAGAGGAGGAATCCTCTTAA
Gene >Pro_DTO070G2_2|g1640.t1
ATGGTGGACGGCGTAAGTTACGGGTATTGATCATACGTTTTCTCCCAGCCAGTCAGCGAAACCAGTGCCTTTCCC
TTGCTGTGGCCCCCCTCTCTTTGCTACTACTACGGCCCTCCCCCCTCTACTCTTCTCTTCTCTTACTATCTTCCT
ACACTACCAACTCCCCATACAAAAACTCCCCTTACAAAAAAAGGTACTGCATATACCCCGAGTTCTATAAATCAA
CACTTCGCAATCGAATTTCCTCCACCACAACCACCACCCCCTTTTTTTTTCAGTTCTTTTGGTCCTTGCAATCCT
TTATTTTCACCTCATTGCCTGTCTTTTTTTTTCCCAATTTGCGCCGACCTTGCGATCGCGCGCTGCACCTCGATC
TATGTTTTTGTCCACCTCAACTAACTCGCAATCGCACAGTCCTTTTTCTTTTCAAAACATATTCCTAATTTGTGA
TCATCAAATTCATGTGAGTTGGTCTCATCCCTATCATCTCAAAGCTCTGTTTTGCCTCGGTCGCAAGTGGTTGGT
TGCGCGCAACGCGTCTAGCCAACACTCGCGTCTGCCCTTCTCATCTCCCACCTCCACTCCGATCTCATTAAATGT
CATGTCAATTGCGCATATAAACCTTCACTTGACTCAATCGCGCCTTTCGTTTCTCCCGCATATTATCTATTGTGC
CAAGAATCCTCGGAAACCACATCTAACCTTCGACAGTCATCATGCCTAAGGAGACCACCACCAAGACCACCCGCA
AGGCCCCCGAGAAGCGCGTCCAGCGCCGCAAGAAGGGTAAGTTCGACATGGAAGTAACCTCGTCGTCAACGGCTT
GTACTAATTGACTTAGACCCCAACGCGCCCAAGCGTGGTCTGTCCGCTTACATGTTCTTCGCCAATGACAACCGT
GATAAGGTCCGCGAGGAGAACCCCGGCATCAGCTTCGGTCAGTGAATTGATTCCCCAACTCCATTGTACTTATCT
AACACCCCCACAGGCCAGGTTGGCAAGCAGCTCGGTGACAAGTGGAAGGCTCTGAGCGAGACCGACCGCAAGCCC
TACGATGCTAAGGCCGCCGCCGACAAGAAGCGCTACGAAGAGGAGAAGGCCGCCTACCTCGCCAAGGCTGAGGAG
GAGGAAGAGGAGGAATCCTCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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