© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 45 |
|---|---|
| Total assembly length (Mbp) | 27.22 |
| Assembly GC content (%) | 48.14 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 7 |
| N50 length (bp) | 1239413 |
| Total repeats (#) | 6073 |
| Repetitive content (bp, %) | 1004177 (3.69%) |
| Genes | 9764 |
| Gene length (median) | 1398 |
| Transcript length (median) | 1239 |
| Exon length (median) | 224 |
| CDS length (median) | 1239 |
| Protein length (median) | 413 |
| Spliced genes (total, %) | 7905 (80.96%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 358.65 |
| Coding content of assembly (bp, %) | 14324019 (52.61%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4047 |
| Genes with PFAM (total, %) | 7373 (75.51%) |
| Genes with GO (total, %) | 4744 (48.59%) |
| Genes with signalP (total, %) | 706 (7.23%) |
| Genes with TMHMM (total, %) | 1978 (20.26%) |
| Genes annotated as TF (total, %) | 416 (4.26%) |
| Genes annotated as MEROPS protease (total, %) | 300 (3.07%) |
| Genes annotated as CAZyme (total, %) | 376 (3.85%) |
| Secondary metabolism gene cluster | 32 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |